ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20c09 |
|---|---|
| Clone Library Name | barley_pub |
>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 280 bits (715), Expect = 2e-75 Identities = 133/159 (83%), Positives = 145/159 (91%) Frame = +3 Query: 3 QRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 182 QRYLTEHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRS+TT++W Sbjct: 1111 QRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQW 1170 Query: 183 ENGFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAF 362 EN FVSVYSKDNPNLLF+M GFE RILPK R + E F++ KDGVWNLQNE TKERTA F Sbjct: 1171 ENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTH-KDGVWNLQNEVTKERTAQCF 1229 Query: 363 LRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALI 479 LRVDDE M+ F NRVRQILM+SGSTTFTKIVNKWNTALI Sbjct: 1230 LRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALI 1268
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 280 bits (715), Expect = 2e-75 Identities = 133/159 (83%), Positives = 145/159 (91%) Frame = +3 Query: 3 QRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 182 QRYLTEHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRS+TT++W Sbjct: 1111 QRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQW 1170 Query: 183 ENGFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAF 362 EN FVSVYSKDNPNLLF+M GFE RILPK R + E F++ KDGVWNLQNE TKERTA F Sbjct: 1171 ENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTH-KDGVWNLQNEVTKERTAQCF 1229 Query: 363 LRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALI 479 LRVDDE M+ F NRVRQILM+SGSTTFTKIVNKWNTALI Sbjct: 1230 LRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALI 1268
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 276 bits (707), Expect = 2e-74 Identities = 131/159 (82%), Positives = 142/159 (89%) Frame = +3 Query: 3 QRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 182 QRYLTEHPDPNNEN+VGYNNKKCWPRDARMRLMKHDVNLGR+VFWD+KNRLPRSITT+EW Sbjct: 1103 QRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSITTVEW 1162 Query: 183 ENGFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAF 362 EN FVSVYSKDNPN+LF MSGFE RILPK R E F + +DGVWNLQNE TKERTA F Sbjct: 1163 ENSFVSVYSKDNPNMLFDMSGFECRILPKCRTANEEFVH-RDGVWNLQNEVTKERTAQCF 1221 Query: 363 LRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALI 479 L+VD+E + F NR+RQILMSSGSTTFTKIVNKWNTALI Sbjct: 1222 LKVDEESLSKFHNRIRQILMSSGSTTFTKIVNKWNTALI 1260
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 221 bits (562), Expect = 1e-57 Identities = 101/157 (64%), Positives = 136/157 (86%) Frame = +3 Query: 9 YLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWEN 188 YL E+PDPN EN +GYNN+KCWP+D+RMRL++ DVNLGR+VFW++++R+P S+T+++WEN Sbjct: 1186 YLAENPDPNFENSIGYNNRKCWPKDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWEN 1245 Query: 189 GFVSVYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLR 368 FVSVYSK+NPNLLFSM GFEVRILP+ RM +E SN +GVW+L +E+TK+RTA A+L+ Sbjct: 1246 AFVSVYSKNNPNLLFSMCGFEVRILPRQRM-EEVVSN-DEGVWDLVDERTKQRTAKAYLK 1303 Query: 369 VDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALI 479 V +E +K F++R+R ILM+SGSTTFTK+ KWNT+LI Sbjct: 1304 VSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLI 1340
>SYG_METJA (Q57681) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 577 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -3 Query: 329 ILQVPYSIFCVAECLLSHTYL----RQYTDLKPRHAKEQVWVILAVYRD 195 +++ Y I + CLL H+Y R Y DLKP A + +V+ V +D Sbjct: 445 VIEPSYGIDRITYCLLEHSYREEEDRVYLDLKPSIAPIKAYVLPLVNKD 493
>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related| protein 6) Length = 581 Score = 30.0 bits (66), Expect = 3.3 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 3/142 (2%) Frame = +3 Query: 24 PDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKN-RLPRSITTLEWENGFVS 200 P P + G +K P +++ N + W ++ +P+++ V Sbjct: 236 PQPETQESSGRADKFLKPLSWGSEVLESSCNQPSTALWQLERFTVPQALQK-------VR 288 Query: 201 VYSKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDG--VWNLQNEQTKERTAIAFLRVD 374 V L+ ++S F T+ F+ ++ G VWNL N+ ++R + L+ Sbjct: 289 VLKHQELLLVVAVSSF----------TRHVFTCSQSGIKVWNLVNQVAEDRDPESHLKCS 338 Query: 375 DEHMKVFENRVRQILMSSGSTT 440 + KV+ +R L+SS S T Sbjct: 339 VQDNKVY---LRTCLLSSNSRT 357
>TCPH_TETTH (P54410) T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta)| (Fragment) Length = 353 Score = 29.6 bits (65), Expect = 4.3 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Frame = -1 Query: 454 TILVNVVDPDDIRICLTR---FSNTFMCSSSTLKNAIAVLSFVCSFCKFHTPSFVLLNAS 284 T+ N++D D I I + +++F+ S K + F KF+ P LLN Sbjct: 126 TLETNLLDKDLIGIKMVTGGSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKICLLNIE 185 Query: 283 *VIRI---FGSIRTSNPDMLKSRFGL--SLLYTETKPFSHSNVVILLGR 152 ++ IR NPD KS L+Y + + S I+L + Sbjct: 186 LELKAEKENAEIRIENPDDYKSIVDAEWELIYEKLRKIVESGANIVLSK 234
>GIT2_HUMAN (Q14161) ARF GTPase-activating protein GIT2 (G protein-coupled| receptor kinase-interactor 2) (GRK-interacting protein 2) (Cool-interacting tyrosine-phosphorylated protein 2) (CAT2) (CAT-2) Length = 759 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 75 PRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEW 182 P ++RMRL ++GRS + LP +TL W Sbjct: 534 PEESRMRLQPFPAHIGRSALVTSSSSLPSFPSTLSW 569
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 29.6 bits (65), Expect = 4.3 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%) Frame = -1 Query: 235 LKSRFGLSLLYTETKP--FSHSNVVILLGRRFFI------SQNTLLPRLTSCFMSLILAS 80 ++SR G L+YT T+P FS S+ + G+ F + ++N P L+S LIL S Sbjct: 677 MESRDG-ELIYTVTRPPCFSFSHRHLDAGKLFMVDSIPKLTKNPTAPGLSSFTQGLILIS 735 Query: 79 LGQH 68 QH Sbjct: 736 ANQH 739
>LY41_SYNY3 (P74269) Putative AIPM/Hcit synthase family transferase sll1564 (EC| 2.3.3.-) Length = 547 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +3 Query: 315 WNLQNEQTKERTAIAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWN 467 W LQ E ++ +AF H V +++ Q ++S+G+ T W+ Sbjct: 62 WQLQEEPLEQAEIVAFCSTRRPHKAVETDKMLQAILSAGTRWVTIFGKSWD 112
>YCOM_RHORU (P72315) Hypothetical 49.9 kDa protein in cooM 5'region| Length = 463 Score = 28.9 bits (63), Expect = 7.3 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +3 Query: 108 DVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLLFSMSGFE 251 D+ GR V W M RL L EN F + PN L + GF+ Sbjct: 385 DIRNGRDVEWAMTTRLDAKTGILVIENAFGHGLNPTFPNYLGTKVGFD 432
>NIA_BEABA (P43100) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)| Length = 894 Score = 28.9 bits (63), Expect = 7.3 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 269 LRQYTDLKPRHAKEQVWVILAVYRD 195 +R YT L HAK Q+ +++ +YRD Sbjct: 691 IRAYTPLSETHAKGQLDILIKIYRD 715
>YGMH_SCHPO (O42965) Hypothetical protein C19G7.17 in chromosome II| Length = 475 Score = 28.5 bits (62), Expect = 9.6 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Frame = -1 Query: 409 LTRFSNTFMCSSSTL--KNAIAVLSFVCSFCKFHTPSFVLLNAS*VIRIFGSIRTSNPDM 236 L F N F S L ++ + F+ F T + L IRI IR+S Sbjct: 224 LFSFKNKFSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLN-----IRIDVPIRSSRVRG 278 Query: 235 LKSRFGLSLLYTETKPFSH-----SNVVILLGRRFFISQNTLLPRL 113 ++ F L LLYT P + S++++ + + N+L+ RL Sbjct: 279 VRQNFPLKLLYTSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRL 324
>YKZ1_YEAST (Q02209) Hypothetical 41.3 kDa protein in FOX2-YPT52 intergenic| region Length = 353 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Frame = +3 Query: 33 NNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSK 212 N++ Y+ K+ W ++ ++ + L FW +++ +SI + + ++ Sbjct: 124 NDQRFKNYD-KRAWLQNCLEKMNRDLSKLNVEQFWSQYDKICQSIAKQKKKQEQFNMEVF 182 Query: 213 DNPNLLFSMSGFEVRILPKIRM---TQEAFSNTKDGVWNLQNEQTKERT 350 DN + S++ + ++L R+ T + + N+ +N+Q + KE + Sbjct: 183 DNFKNIVSIAIIKTKVLSNKRLLTTTLKNYHNSMKKKYNIQEQNLKENS 231
>MTMR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-)| Length = 669 Score = 28.5 bits (62), Expect = 9.6 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 2/137 (1%) Frame = +3 Query: 27 DPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVY 206 D N GY N+ +P + L H++++ R +K + SI W + + Sbjct: 353 DTNKAKGGGYENESAYPNAELIFLEIHNIHVMRESLRKLKEIVYPSIDESHWLSNVDGTH 412 Query: 207 SKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDEH- 383 + +L + + VRI KI + + W ++T + T++A L +D + Sbjct: 413 WLEYIRVLLAGA---VRIADKIESGKTSVVIHCSDGW----DRTSQLTSLAMLMLDSYYR 465 Query: 384 -MKVFENRVRQILMSSG 431 +K FE + + +S G Sbjct: 466 TIKGFEALIEKEWISFG 482 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,050,954 Number of Sequences: 219361 Number of extensions: 1509530 Number of successful extensions: 3697 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3692 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
