ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20c05 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 225 bits (574), Expect = 4e-59 Identities = 112/119 (94%), Positives = 118/119 (99%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 301 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 RKGRFAKDGLIQYRIVCQQVNVSSLE+VIKHFMQLSNEKAE+A++Q +ALEDALDVEDL Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSLEDVIKHFMQLSNEKAEQAKSQVEALEDALDVEDL 119
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 206 bits (523), Expect = 3e-53 Identities = 102/119 (85%), Positives = 112/119 (94%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 301 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 R+GRFAKDGLIQYRIVCQQVN++SLEEVIKHFM L+ E+AE ARNQAQALE+ALDVEDL Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELARNQAQALEEALDVEDL 119
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 203 bits (517), Expect = 2e-52 Identities = 99/119 (83%), Positives = 113/119 (94%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 300 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 301 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 ++GRFAKDGLIQYRIVCQQVNVSSLEEVIKHF+ L+ +KAE+AR+QA ALE+ALDV+DL Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVDDL 119
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 137 bits (344), Expect = 2e-32 Identities = 64/118 (54%), Positives = 91/118 (77%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 303 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 304 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 K AK+GL QY+ +CQQVN+ SLE+V++ +++L+ EK E A+ ++Q + LD+EDL Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLAEEKTEAAKEESQQM--VLDIEDL 118
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 136 bits (342), Expect = 3e-32 Identities = 63/118 (53%), Positives = 91/118 (77%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 303 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 304 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 K AK+GL QY+ +CQQVN+ SLE+V++ +++++ EK E A+ ++Q + LD+EDL Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAKEESQQM--VLDIEDL 118
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 119 bits (297), Expect = 5e-27 Identities = 58/116 (50%), Positives = 83/116 (71%) Frame = +1 Query: 130 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 309 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 310 RFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 AKD L QY+ + QQ+NV SLE V+ HF++L+ ++ E+A Q Q++E ++ DL Sbjct: 66 HLAKDALFQYKALTQQINVKSLETVVVHFLKLAEQRTEDA--QKQSIEKVEEIGDL 119
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 103 bits (256), Expect = 3e-22 Identities = 50/106 (47%), Positives = 77/106 (72%), Gaps = 1/106 (0%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 312 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 313 FAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQAL 450 AK+GL Y+ Q +V+++E V+KHF++L+N++ +EA+ +A + Sbjct: 67 IAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKI 112
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 87.8 bits (216), Expect = 1e-17 Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 4/118 (3%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 309 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 310 RFAKDGLIQYRIVCQ--QVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVEDL 477 + KDGL QY+ + Q + S+ V + F+ L K + +A L+ +DL Sbjct: 66 KLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEIDDDL 123
>RGP1_XENLA (O13066) Ran GTPase-activating protein 1| Length = 580 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/41 (36%), Positives = 29/41 (70%) Frame = +1 Query: 343 IVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALD 465 ++ QQVNV+ E+V++ F+Q+S+ E+ +A A+E+ +D Sbjct: 449 MIAQQVNVADTEKVVQAFIQVSSVYREDGEIKA-AVEETID 488
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +1 Query: 190 QAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQVNVS 369 QA L+ L D T R Q + ++ + C DL+ + GLI +I+CQ +S Sbjct: 1245 QAVLRGLIDYDTGIRLLETQLMISGLISPELRKCFDLKDAK--SHGLIDEQILCQLKELS 1302 Query: 370 SLEEVI 387 +E+I Sbjct: 1303 KAKEII 1308
>IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 254 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +1 Query: 325 GLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQ 444 G +YRIV + + EE++K +Q+ NEKA++ + + + Sbjct: 211 GAPRYRIVVKDKDYKKAEEILKKVVQIVNEKAKKLQVEVE 250
>Y1002_RHIME (Q52969) Hypothetical sensor-like histidine kinase R01002 (EC| 2.7.13.3) Length = 525 Score = 30.4 bits (67), Expect = 2.5 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Frame = +1 Query: 166 ELIHVGQKQAALQALHDL-ITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYR 342 E IHV + A L+A+ L + S+R VD+R R + DG Sbjct: 149 EQIHVSDRIAFLRAIDSLRLDSERS-----------------AVDIRLERTSADGPQFAH 191 Query: 343 IVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALDVE 471 I C+ + E + + S + +EEAR QA+A A E Sbjct: 192 IYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAE 234
>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase| Length = 880 Score = 30.0 bits (66), Expect = 3.3 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +1 Query: 133 AKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGR 312 A + K+ E+ + K ++ ++ R K LE I K EL + + K + Sbjct: 201 ANEDELTKKLSEINEISSKLPPIRG-----ELEKVRENVKELESIKGKISELKIQVEKLK 255 Query: 313 FAKDGL------IQYRIVCQQVNVSSLEEVIKHFMQLSNEKAE 423 K GL I+ I ++ +S LEE++K +L ++ E Sbjct: 256 GRKKGLEEKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKE 298
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 29.6 bits (65), Expect = 4.3 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +1 Query: 130 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIM---MKYVELCVDL 300 FAKPE+ + + + +A + LH ++ R + +EK M ++VE C Sbjct: 1005 FAKPESQILESGREQMDDEARAIISKLHKVLRPYLLRRLKADVEKQMPAKYEHVEFCRLS 1064 Query: 301 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQL 405 ++ R DG + + +N + +I MQL Sbjct: 1065 KRQRELYDGFLSRTDTKETLNSGNYLSIINCLMQL 1099
>MYH9_CHICK (P14105) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1959 Score = 28.9 bits (63), Expect = 7.3 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Frame = +1 Query: 115 PAMATFAKPENALKRAEELIHVGQKQ-AALQALHDLITSKRYRSWQK-PLEKIMMKYVEL 288 P + + E + + EELI V +KQ AA L ++ T + +K L++ + EL Sbjct: 836 PLLQVSRQEEEMMAKEEELIKVKEKQLAAENRLSEMETFQAQLMAEKMQLQEQLQAEAEL 895 Query: 289 CVDLRKGRFAKDGLIQ-YRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDALD 465 C + + R Q +C + + +EE + L EK + +N Q LE+ L+ Sbjct: 896 CAEAEEIRARLTAKKQELEEICHDLE-ARVEEEEERCQHLQAEKKKMQQN-IQELEEQLE 953 Query: 466 VED 474 E+ Sbjct: 954 EEE 956
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +1 Query: 103 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 267 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIF 1481 Query: 268 MMKYVELCVDLRK 306 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 28.9 bits (63), Expect = 7.3 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Frame = +1 Query: 103 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 267 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIF 1481 Query: 268 MMKYVELCVDLRKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSN-EKAEEARNQAQ 444 + K+ E D RK I+ R QQ + + H ++ + E+ +E N Sbjct: 1482 VSKFTEF--DARKLHKLYKHAIKKRQESQQNSDQNSNVATTHVIRNPDMERLKENTNHDD 1539 Query: 445 ALEDA 459 + D+ Sbjct: 1540 SSRDS 1544
>MYH9_HUMAN (P35579) Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle| myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) Length = 1959 Score = 28.5 bits (62), Expect = 9.6 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Frame = +1 Query: 115 PAMATFAKPENALKRAEELIHVGQKQ-AALQALHDLITSKRYRSWQK-PLEKIMMKYVEL 288 P + + E + + EEL+ V +KQ AA L ++ T + +K L++ + EL Sbjct: 835 PLLQVSRQEEEMMAKEEELVKVREKQLAAENRLTEMETLQSQLMAEKLQLQEQLQAETEL 894 Query: 289 CV---DLRKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQALEDA 459 C +LR AK ++ +C + + +EE + L EK + +N Q LE+ Sbjct: 895 CAEAEELRARLTAKKQELEE--ICHDLE-ARVEEEEERCQHLQAEKKKMQQN-IQELEEQ 950 Query: 460 LDVED 474 L+ E+ Sbjct: 951 LEEEE 955 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,057,840 Number of Sequences: 219361 Number of extensions: 935059 Number of successful extensions: 2945 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2943 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
