ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20c04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 902 bits (455), Expect = 0.0 Identities = 507/519 (97%), Gaps = 4/519 (0%) Strand = Plus / Plus Query: 1 acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60 |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 4 acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc 60 Query: 61 gaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccca 120 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 61 -aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccca 119 Query: 121 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgc 179 Query: 181 caccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcag 240 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 ccacgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcag 239 Query: 241 ctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 ctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacct 299 Query: 301 ggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgc 359 Query: 361 cgtcaccttcgactggtcggtggtcaagctgggggtgccgggcgccatcatcgtcaagaa 420 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 360 cgtcaccttcgactggtcggtggacaagctgggggtgccgggggccatcatcgtcaagaa 419 Query: 421 caaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 caaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcgg 479 Query: 481 caccatcgtcttcgtcgccaactcatgggtctacccgca 519 ||||||||||||||||||||||||||||||||||||||| Sbjct: 480 caccatcgtcttcgtcgccaactcatgggtctacccgca 518
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 305 bits (154), Expect = 8e-80 Identities = 336/397 (84%), Gaps = 6/397 (1%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 242 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 301 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 302 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 361 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 294 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 347 Query: 362 gtcaccttcgactggtcggtggtcaagctgggggtgccgggcgccatcatcgtcaagaac 421 ||||| ||||||||| ||||| |||||||| |||||||| ||| || ||||||||||| Sbjct: 348 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtcaagaac 407 Query: 422 aaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggc 481 ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 408 aaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcccggccgcggc 467 Query: 482 accatcgtcttcgtcgccaactcatgggtctacccgc 518 || || ||||||||||||||| ||||||||||||| Sbjct: 468 gccgtcaacttcgtcgccaactcctgggtctacccgc 504
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 301 bits (152), Expect = 1e-78 Identities = 334/395 (84%), Gaps = 6/395 (1%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 242 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 301 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 302 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 361 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 232 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 285 Query: 362 gtcaccttcgactggtcggtggtcaagctgggggtgccgggcgccatcatcgtcaagaac 421 ||||| ||||||||| ||||| |||||||| |||||||| ||| || ||||||||||| Sbjct: 286 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtcaagaac 345 Query: 422 aaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggc 481 ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 346 aaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcccggccgcggc 405 Query: 482 accatcgtcttcgtcgccaactcatgggtctaccc 516 || || ||||||||||||||| ||||||||||| Sbjct: 406 gccgtcaccttcgtcgccaactcctgggtctaccc 440
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 220 bits (111), Expect = 3e-54 Identities = 159/175 (90%) Strand = Plus / Plus Query: 345 gcgagaacaagttcgccgtcaccttcgactggtcggtggtcaagctgggggtgccgggcg 404 |||||||| ||||| |||||||||||||||| ||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 405 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgaca 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcaacg 409 Query: 465 acgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctacccgca 519 |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 410 acgtccccggccacggcaccatcgtcttcgtcgccaactcatggatctacccgca 464 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 202 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 261 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 262 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 312 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 204 bits (103), Expect = 2e-49 Identities = 198/230 (86%), Gaps = 6/230 (2%) Strand = Plus / Plus Query: 287 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 346 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 347 gagaacaagttcgccgtcaccttcgactggtcggtggtcaagctgggggtgccgggcgcc 406 ||| |||||||| |||||| ||||||||| ||||| |||||||| |||||||| ||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggcc 1058 Query: 407 atcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaac 466 || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 1059 gtcgtcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgacgac 1118 Query: 467 gtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 ||||||||||||||| || || ||||||||||||||| ||||||||||| Sbjct: 1119 gtgcccggccgcggcgccgtcaccttcgtcgccaactcctgggtctaccc 1168 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 242 tccaccaacgtcgac 256 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 202 bits (102), Expect = 8e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 235 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 294 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 295 gaacctggagcagtggct 312 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 381 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 382 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 437
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 202 bits (102), Expect = 8e-49 Identities = 159/178 (89%) Strand = Plus / Plus Query: 342 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggtcaagctgggggtgccgg 401 |||||||| || ||||| |||||||||||||||| ||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 402 gcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcg 461 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttcttcctcaagaccatcaccatcg 2927 Query: 462 acaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctacccgca 519 || |||| ||||||| |||| |||||||||||||||||||||||||||| |||||||| Sbjct: 2928 acgacgtccccggccacggccccatcgtcttcgtcgccaactcatgggtgtacccgca 2985 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 186 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 245 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 246 ccaacgtcgacc 257 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 272 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 317 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 202 bits (102), Expect = 8e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 235 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 294 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 295 gaacctggagcagtggct 312 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 496 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 497 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 552
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 235 catcagctccaccaacgtcgacc 257 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30023718 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30023719 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30023774 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 242 tccaccaacgtcgacc 257 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 129 bits (65), Expect = 1e-26 Identities = 118/135 (87%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 385 caagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcct 444 |||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| Sbjct: 27799415 caagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcct 27799474 Query: 445 caagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgccaa 501 ||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||||| Sbjct: 27799475 caagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaa 27799534 Query: 502 ctcatgggtctaccc 516 ||| ||||||||||| Sbjct: 27799535 ctcctgggtctaccc 27799549 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 27816818 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27816877 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 27816878 ttcgtcgccaactcgtggatctaccc 27816903 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 27758807 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 27758866 Query: 455 accctc 460 |||||| Sbjct: 27758867 accctc 27758872 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Minus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 235 catcagctccaccaacgtcgacc 257 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Minus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 84033 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 84032 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 83977 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 235 catcagctccaccaacgtcgacc 257 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30115140 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30115141 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30115196 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 242 tccaccaacgtcgacc 257 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 129 bits (65), Expect = 1e-26 Identities = 118/135 (87%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 385 caagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcct 444 |||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| Sbjct: 27890739 caagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcct 27890798 Query: 445 caagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgccaa 501 ||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||||| Sbjct: 27890799 caagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaa 27890858 Query: 502 ctcatgggtctaccc 516 ||| ||||||||||| Sbjct: 27890859 ctcctgggtctaccc 27890873 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 27908142 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27908201 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 27908202 ttcgtcgccaactcgtggatctaccc 27908227 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 27850130 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 27850189 Query: 455 accctc 460 |||||| Sbjct: 27850190 accctc 27850195 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 186 bits (94), Expect = 5e-44 Identities = 172/198 (86%) Strand = Plus / Plus Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 174 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 234 ||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 235 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 294 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 295 gaacctggagcagtggct 312 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 478 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 479 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 534
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 176 bits (89), Expect = 5e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 242 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 301 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 302 gagcagtgg 310 ||||||||| Sbjct: 303 gagcagtgg 311 Score = 115 bits (58), Expect = 1e-22 Identities = 141/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 352 caagttcgccgtcaccttcgactggtcggtggtcaagctgggggtgccgggcgccatcat 411 |||||||| | |||||||||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 412 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 471 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 407 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 466 Query: 472 cggccgc---ggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 ||||||| |||| | || ||||||||||||||||||| ||||||| Sbjct: 467 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 514
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 242 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 301 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 302 gagcagtggct 312 ||||||||||| Sbjct: 232 gagcagtggct 242 Score = 129 bits (65), Expect = 1e-26 Identities = 118/135 (87%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 385 caagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcct 444 |||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| Sbjct: 312 caagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcct 371 Query: 445 caagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgccaa 501 ||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||||| Sbjct: 372 caagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaa 431 Query: 502 ctcatgggtctaccc 516 ||| ||||||||||| Sbjct: 432 ctcctgggtctaccc 446
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 242 tccaccaacgtcgacc 257 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 129 bits (65), Expect = 1e-26 Identities = 118/135 (87%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 385 caagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcct 444 |||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| Sbjct: 43545 caagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcct 43604 Query: 445 caagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgccaa 501 ||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||||| Sbjct: 43605 caagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaa 43664 Query: 502 ctcatgggtctaccc 516 ||| ||||||||||| Sbjct: 43665 ctcctgggtctaccc 43679 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 60948 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 61007 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 61008 ttcgtcgccaactcgtggatctaccc 61033 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 2936 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 2995 Query: 455 accctc 460 |||||| Sbjct: 2996 accctc 3001
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 242 tccaccaacgtcgacc 257 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 129 bits (65), Expect = 1e-26 Identities = 118/135 (87%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 385 caagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcct 444 |||||| || |||||||| |||||||||||||||||| ||||| | |||||||||||| Sbjct: 14478 caagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcct 14419 Query: 445 caagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgccaa 501 ||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||||| Sbjct: 14418 caagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaa 14359 Query: 502 ctcatgggtctaccc 516 ||| ||||||||||| Sbjct: 14358 ctcctgggtctaccc 14344 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 55087 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 55028 Query: 455 accctc 460 |||||| Sbjct: 55027 accctc 55022 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 275 gggaaggtgggcgcggaggcgaacctggagcagtggct 312 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 119 bits (60), Expect = 9e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 401 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 460 ||||||| || || ||||||| |||||||| ||| | || |||||||||||||||||||| Sbjct: 250 ggcgccagcaccggcaagaaccaccacgccgccggggtcgtcctcaagaccatcaccctc 309 Query: 461 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 | |||||| ||||||| |||| || ||||||||||||||||||| ||||||||||| Sbjct: 310 gccaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctgggtctaccc 365 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 146 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 205 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 206 ctcctcggccgcggcgtcacctgccagctcatcagctcc 244 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 115 bits (58), Expect = 1e-22 Identities = 141/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 352 caagttcgccgtcaccttcgactggtcggtggtcaagctgggggtgccgggcgccatcat 411 |||||||| | |||||||||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 412 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 471 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 4400 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 4459 Query: 472 cggccgc---ggcaccatcgtcttcgtcgccaactcatgggtctaccc 516 ||||||| |||| | || ||||||||||||||||||| ||||||| Sbjct: 4460 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 4507 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 181 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 182 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 241 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 242 tccacc 247 |||||| Sbjct: 3686 tccacc 3691 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 261 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 310 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 185 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 244 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 245 ttcgtcgccaactcgtggatctaccc 270
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 664 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 723 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 724 ttcgtcgccaactcgtggatctaccc 749
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 658 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 717 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 718 ttcgtcgccaactcgtggatctaccc 743
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 336 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 395 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 396 ttcgtcgccaactcgtggatctaccc 421
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 431 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 490 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 665 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 724 Query: 491 ttcgtcgccaactcatgggtctaccc 516 |||||||||||||| ||| ||||||| Sbjct: 725 ttcgtcgccaactcgtggatctaccc 750
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 432 ccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtct 491 ||||||||||||||||||| |||||||||| ||| || ||| |||||| |||||| Sbjct: 608 ccgagttcttcctcaagacgctcaccctcgagggcgtcccaggcaagggcaccgtcgtct 667 Query: 492 tcgtcgccaactcatgggtctacccgca 519 ||||||||||||| |||||||||||||| Sbjct: 668 tcgtcgccaactcgtgggtctacccgca 695
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 316 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 375 Query: 455 accctc 460 |||||| Sbjct: 376 accctc 381
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 382 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 441 Query: 455 accctc 460 |||||| Sbjct: 442 accctc 447
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 395 gtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatc 454 ||||| || ||||||||| |||||||| ||||| || |||||||||||||||||||| Sbjct: 390 gtgccaggggccatcatcatcaagaaccaccacagtaccaagttcttcctcaagaccatc 449 Query: 455 accctc 460 |||||| Sbjct: 450 accctc 455
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 430 ctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgt 489 |||||||| | | |||||||| |||||||| || ||| |||||| |||||| |||| Sbjct: 505 ctccgagtacctgctcaagacgctcaccctccacggcgtccccggcaagggcaccgtcgt 564 Query: 490 cttcgtcgccaactcatgggtctaccc 516 ||||||||||||||| ||| ||||||| Sbjct: 565 cttcgtcgccaactcctggatctaccc 591
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 434 gagttcttcctcaagaccatcaccctcgaca 464 ||||||||| |||| |||||||||||||||| Sbjct: 134348 gagttcttcgtcaacaccatcaccctcgaca 134378
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 434 gagttcttcctcaagaccatcaccctcgaca 464 ||||||||| |||| |||||||||||||||| Sbjct: 20827287 gagttcttcgtcaacaccatcaccctcgaca 20827317
>dbj|AK102084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M03, full insert sequence Length = 2930 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 434 gagttcttcctcaagaccatcaccctcgaca 464 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 434 gagttcttcctcaagaccatcaccctcgaca 464 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 434 gagttcttcctcaagaccatcaccctcgaca 464 ||||||||| |||| |||||||||||||||| Sbjct: 21137522 gagttcttcgtcaacaccatcaccctcgaca 21137552
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 154 cgcgctcgacttcaacgacttcggcg 179 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 175 cggcgccaccgtcatggacggcgtcaccg 203 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cggggggcctccggggcgccc 119 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AE005890.1| Caulobacter crescentus CB15 section 216 of 359 of the complete genome Length = 10981 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 373 ctggtcggtggtcaagctgggggtg 397 ||||||||||||| ||||||||||| Sbjct: 221 ctggtcggtggtcgagctgggggtg 197
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 atcaccctcgacaacgtgcc 471 |||||||||||||||||||| Sbjct: 301337 atcaccctcgacaacgtgcc 301318
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gctcctgccgacgaacctgc 329 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 acctgccgttcatcaccaccggcg 347 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 acctgccgttcatcaccaccggcg 347 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 cggcggcatcgtgagcgacctgac 99 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ggtgccgggcgccatcatcg 413 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 agctcctcggccgcggcgtc 223 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 agctcatcagctccaccaac 250 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 caccaacgtcgaccacaaca 263 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gccgttcatcaccaccggcg 347 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 acctggagcagtggctcctg 316 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 tcggcgccaccgtcatggacggcg 197 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ccgcggcaccatcgtcttcg 494 |||||||||||||||||||| Sbjct: 2565281 ccgcggcaccatcgtcttcg 2565300 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 tgcgcaagaacgcgctcgacttca 167 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ggcgtcggcggcatcgtgag 90 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 190 ggacggcgtcaccgagctcctcggccgcggcg 221 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ggcgtcggcggcatcgtgagcgac 94 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,063,721 Number of Sequences: 3902068 Number of extensions: 3063721 Number of successful extensions: 67778 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66048 Number of HSP's gapped (non-prelim): 1715 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
