>SYT_PROAC (Q6A8U3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 684

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 283 STTAQLASDPPGSPAYQPRGHVYVRDYLG----THTISYD 176
           ST  QL  DP G+  Y P+  V VRD +G      TI YD
Sbjct: 480 STGLQLVPDPGGAAFYGPKVSVQVRDAIGRTWQMSTIQYD 519

>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad|
           ubiquitination regulatory factor 1 homolog) (DSmurf)
           (Lethal with a checkpoint kinase protein)
          Length = 1061

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 341 PLLAPREPGLSTSSRTTALVHDRAARQRPSWQPGVPTT 228
           P+ A   PG  TSS  ++    R   QRP+ +P  PT+
Sbjct: 279 PVSATTTPGKKTSSSNSSSAGGRTLEQRPTNEPATPTS 316

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4)
          Length = 1217

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 252 GGSLASCAVVDQGRGP*ARRQSR---FSGCQQWTKAGRSAPSGASQEIAPPPLPSRNRRM 422
           G S  SC V    +   A+ Q +     G    T  G + P    Q   PPPLPS++  M
Sbjct: 213 GVSSKSCCVAKSSKDLVAKAQDKETPHDGLVAVTSLGSAPPQPPCQTFPPPPLPSKSAAM 272

>ZHX3_HUMAN (Q9H4I2) Zinc finger and homeobox protein 3 (Triple homeobox 1|
            protein)
          Length = 956

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = -3

Query: 382  SCEAPDGAERPALVHCWHPENRDCRRAQGPRPWSTTAQLASDPPGSPAYQPRGHVYVRDY 203
            S  A  G  RP +V  W  ++R   +  G   W    +  + PPG     P     ++DY
Sbjct: 796  SIMAQTGLPRPEVVR-WFGDSRYALK-NGQLKWYEDYKRGNFPPGLLVIAPGNRELLQDY 853

Query: 202  LGTHTISYDASFRRDQLQEFC 140
              TH + Y+     + LQ  C
Sbjct: 854  YMTHKMLYE-----EDLQNLC 869

>LRFN4_HUMAN (Q6PJG9) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 4 precursor
          Length = 635

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 273 AVVDQGRGP*-ARRQSRFSGCQQWTKAGRSAPSGASQEIAPPPLPSRNRRMDLPQAVC 443
           A++ +GRG    R   + S  Q  T  G S    A    +PPP P R+  +DL  A C
Sbjct: 536 ALLVRGRGAGNGRLPLKLSHVQSQTNGGPSPTPKAHPPRSPPPRPQRSCSLDLGDAGC 593

>DRE2C_ARATH (Q8LFR2) Dehydration-responsive element-binding protein 2C (DREB2C|
           protein)
          Length = 341

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -3

Query: 409 LDGSGGGAISCEAPDGAERPALVHCWHPENRDC-RRAQGPRPWSTTAQLASDPPGSPAYQ 233
           +DG G  +I    P G+ +  +     PEN  C  R    R W        +P G     
Sbjct: 38  IDGGGPKSIRKPPPKGSRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGG---- 93

Query: 232 PRGHVYVRDYLGTHTISYDASFRRDQ 155
                  R +LGT + SY+A+   D+
Sbjct: 94  ------ARLWLGTFSSSYEAALAYDE 113

>CPNE5_MOUSE (Q8JZW4) Copine-5 (Copine V)|
          Length = 593

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 307 RAQGPRPWSTTAQLASDPPGSPAYQPRG 224
           +AQG RP    A  A  PP SPA+ P G
Sbjct: 559 KAQGIRPRPPPAAPAQSPPQSPAHSPPG 586

>MTP7_PSEAE (P05103) Modification methylase PaeR7I (EC 2.1.1.72)|
           (Adenine-specific methyltransferase PaeR7I) (M.PaeR7I)
          Length = 549

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 327 PRTGTVDELKDHGPGPRPRSSPATLLAARRTNHAAMYMYVTI*VHTLSRTMRASGA 160
           P  G  D +  + P  RP   PA LLA  R+ +  MY    I +  + R++ A  A
Sbjct: 127 PLEGQFDFVVGNPPYVRPELIPAPLLAEYRSRYQTMYDRADIYIPFIERSLTALSA 182

>RL2_VIBVY (Q7MPI5) 50S ribosomal protein L2|
          Length = 274

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 226 RVVGTPGCQEGRWRAARSWTRAVVLELVDSP--GSRGASSGPKQGV 357
           R +G  G    RWR  R   R VV+  VD P  G  G +SG +  V
Sbjct: 203 RELGKAGAS--RWRGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPV 246

>RL2_VIBVU (Q8DE42) 50S ribosomal protein L2|
          Length = 274

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 226 RVVGTPGCQEGRWRAARSWTRAVVLELVDSP--GSRGASSGPKQGV 357
           R +G  G    RWR  R   R VV+  VD P  G  G +SG +  V
Sbjct: 203 RELGKAGAS--RWRGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPV 246

>RL2_VIBPA (Q87T10) 50S ribosomal protein L2|
          Length = 274

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 226 RVVGTPGCQEGRWRAARSWTRAVVLELVDSP--GSRGASSGPKQGV 357
           R +G  G    RWR  R   R VV+  VD P  G  G +SG +  V
Sbjct: 203 RELGKAGAS--RWRGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPV 246

>RL2_VIBCH (Q9KNY7) 50S ribosomal protein L2|
          Length = 274

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 226 RVVGTPGCQEGRWRAARSWTRAVVLELVDSP--GSRGASSGPKQGV 357
           R +G  G    RWR  R   R VV+  VD P  G  G +SG +  V
Sbjct: 203 RELGKAGA--ARWRGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPV 246

>KCNAB_DROME (P17970) Potassium voltage-gated channel protein Shab|
          Length = 985

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 240 AGLPGGSLASCAVVDQGRGP*ARRQSRFSGCQQWTKAGRSAPSGAS-QEIAPPPLPSRNR 416
           AGLP G++ S A    G G         +G    T AG  + SGA+ +E+   P P  + 
Sbjct: 147 AGLPAGAVGSGAGAGAGAGASVTGSGSGAGTGTGTGAGSGSGSGAAGKEVRYAPFPVASP 206

Query: 417 RMDLP 431
              +P
Sbjct: 207 THSIP 211

>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)|
          Length = 209

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 313 CRRAQGP----RPWSTTAQLASDPPGSPAYQPRGHVYV 212
           C R   P    RPW   A L S+PP SP+ QP   +Y+
Sbjct: 64  CSRNSAPGSCCRPW---ASLWSEPPPSPSSQPAPPMYI 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,046,708
Number of Sequences: 219361
Number of extensions: 1625665
Number of successful extensions: 5580
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5579
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)