Clone Name | bastl20b11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full insert sequence Length = 3311 Score = 264 bits (133), Expect = 2e-67 Identities = 324/388 (83%) Strand = Plus / Plus Query: 76 ccgcctgccgagatggatgacagctgtgcggtatgcgcggacgcgctcgaatgggtggcc 135 ||||| || |||||||| |||||||| ||||| |||||||||||||| || ||||||||| Sbjct: 198 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 257 Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195 |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| Sbjct: 258 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 317 Query: 196 ctcgaggactctctatgctgcatctgtaagacggattgcccctccgtattcgtcacaaag 255 | | ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||| Sbjct: 318 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 377 Query: 256 gccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaagt 315 || ||||| ||||||||||||||||| |||||| | |||| ||| ||| ||||| | Sbjct: 378 gctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaact 437 Query: 316 gagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatgcc 375 |||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct: 438 gagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgct 497 Query: 376 gatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanagct 435 || || || ||||||||| | || ||||| || |||||||||||||| ||||||| |||| Sbjct: 498 gagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagct 557 Query: 436 gaggatcaggttggtcaggcagcacaag 463 || ||||||| ||| ||||||||||||| Sbjct: 558 gaagatcaggctggccaggcagcacaag 585
>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full insert sequence Length = 3137 Score = 264 bits (133), Expect = 2e-67 Identities = 324/388 (83%) Strand = Plus / Plus Query: 76 ccgcctgccgagatggatgacagctgtgcggtatgcgcggacgcgctcgaatgggtggcc 135 ||||| || |||||||| |||||||| ||||| |||||||||||||| || ||||||||| Sbjct: 150 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 209 Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195 |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| Sbjct: 210 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 269 Query: 196 ctcgaggactctctatgctgcatctgtaagacggattgcccctccgtattcgtcacaaag 255 | | ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||| Sbjct: 270 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 329 Query: 256 gccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaagt 315 || ||||| ||||||||||||||||| |||||| | |||| ||| ||| ||||| | Sbjct: 330 gctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaact 389 Query: 316 gagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatgcc 375 |||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct: 390 gagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatgct 449 Query: 376 gatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanagct 435 || || || ||||||||| | || ||||| || |||||||||||||| ||||||| |||| Sbjct: 450 gagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaagct 509 Query: 436 gaggatcaggttggtcaggcagcacaag 463 || ||||||| ||| ||||||||||||| Sbjct: 510 gaagatcaggctggccaggcagcacaag 537
>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12, complete sequence Length = 135323 Score = 149 bits (75), Expect = 1e-32 Identities = 176/210 (83%) Strand = Plus / Plus Query: 254 aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313 |||| ||||| ||||||||||||||||| |||||| | |||| ||| ||| ||||| Sbjct: 130865 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 130924 Query: 314 gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373 ||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||| Sbjct: 130925 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 130984 Query: 374 ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433 | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| || Sbjct: 130985 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 131044 Query: 434 ctgaggatcaggttggtcaggcagcacaag 463 |||| ||||||| ||| ||||||||||||| Sbjct: 131045 ctgaagatcaggctggccaggcagcacaag 131074 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 76 ccgcctgccgagatggatgacagctgtgcggtatgcgcggacgcgctcgaatgggtggcc 135 ||||| || |||||||| |||||||| ||||| |||||||||||||| || ||||||||| Sbjct: 129884 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 129943 Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195 |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| Sbjct: 129944 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 130003 Query: 196 ctcgaggactctctatgctgcatctgtaagacggattgcccctccgtattcgtcacaaag 255 | | ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||| Sbjct: 130004 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 130063 Query: 256 g 256 | Sbjct: 130064 g 130064
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 149 bits (75), Expect = 1e-32 Identities = 176/210 (83%) Strand = Plus / Plus Query: 254 aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313 |||| ||||| ||||||||||||||||| |||||| | |||| ||| ||| ||||| Sbjct: 5806 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 5865 Query: 314 gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373 ||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||| Sbjct: 5866 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 5925 Query: 374 ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433 | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| || Sbjct: 5926 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 5985 Query: 434 ctgaggatcaggttggtcaggcagcacaag 463 |||| ||||||| ||| ||||||||||||| Sbjct: 5986 ctgaagatcaggctggccaggcagcacaag 6015 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 76 ccgcctgccgagatggatgacagctgtgcggtatgcgcggacgcgctcgaatgggtggcc 135 ||||| || |||||||| |||||||| ||||| |||||||||||||| || ||||||||| Sbjct: 4825 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 4884 Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195 |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| Sbjct: 4885 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 4944 Query: 196 ctcgaggactctctatgctgcatctgtaagacggattgcccctccgtattcgtcacaaag 255 | | ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||| Sbjct: 4945 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 5004 Query: 256 g 256 | Sbjct: 5005 g 5005
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 149 bits (75), Expect = 1e-32 Identities = 176/210 (83%) Strand = Plus / Plus Query: 254 aggccatgggagattacacaaaagtgatctccgatttctctgttttgcccactgaggcaa 313 |||| ||||| ||||||||||||||||| |||||| | |||| ||| ||| ||||| Sbjct: 11561371 aggctatgggcgattacacaaaagtgataaatgatttcaatattttcccccctgtggcaa 11561430 Query: 314 gtgagggaaatgtgggggagtactggtaccatgaggatacaaaggcatactttgatgatg 373 ||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||| Sbjct: 11561431 ctgagggaaaggtgggggagtactggtaccatgaggatagccaggcattttttgacgatg 11561490 Query: 374 ccgatcattataagatgataagggcgatgtgccgactttcttgtagtgtatgtgacanag 433 | || || || ||||||||| | || ||||| || |||||||||||||| ||||||| || Sbjct: 11561491 ctgagcactacaagatgatacgagcaatgtgtcggctttcttgtagtgtgtgtgacaaag 11561550 Query: 434 ctgaggatcaggttggtcaggcagcacaag 463 |||| ||||||| ||| ||||||||||||| Sbjct: 11561551 ctgaagatcaggctggccaggcagcacaag 11561580 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 76 ccgcctgccgagatggatgacagctgtgcggtatgcgcggacgcgctcgaatgggtggcc 135 ||||| || |||||||| |||||||| ||||| |||||||||||||| || ||||||||| Sbjct: 11560390 ccgcccgcggagatggacgacagctgcgcggtgtgcgcggacgcgctggagtgggtggcc 11560449 Query: 136 tacgggccatgcgggcaccgcgaggtgtgttcaacctgcgtcgtccgccttcgcttcgta 195 |||||| | ||||| ||||||||||| || || ||||||||||| ||||| |||||||| Sbjct: 11560450 tacggggcctgcggccaccgcgaggtttgctcgacctgcgtcgttcgcctccgcttcgtg 11560509 Query: 196 ctcgaggactctctatgctgcatctgtaagacggattgcccctccgtattcgtcacaaag 255 | | ||| | ||||||||||| ||||| || ||| |||||||||||||||| ||| Sbjct: 11560510 atgggcgacaagcactgctgcatctgcaagaccgagtgctcctccgtattcgtcaccaag 11560569 Query: 256 g 256 | Sbjct: 11560570 g 11560570
>ref|NM_187857.1| Oryza sativa (japonica cultivar-group), Ozsa8301 predicted mRNA Length = 2199 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 109 tgcgcggacgcgctcgaatgggtggcctacgggccatgcgggcaccgcgaggtgtgttca 168 |||||||| ||||||| |||||||||||||| | |||| ||||||||||| || || Sbjct: 208 tgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctcc 267 Query: 169 acctgcgtcgtccgccttcgcttcgt 194 |||||||||| |||||| |||||||| Sbjct: 268 acctgcgtcgcccgcctccgcttcgt 293
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 109 tgcgcggacgcgctcgaatgggtggcctacgggccatgcgggcaccgcgaggtgtgttca 168 |||||||| ||||||| |||||||||||||| | |||| ||||||||||| || || Sbjct: 8296833 tgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctcc 8296892 Query: 169 acctgcgtcgtccgccttcgcttcgt 194 |||||||||| |||||| |||||||| Sbjct: 8296893 acctgcgtcgcccgcctccgcttcgt 8296918
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 109 tgcgcggacgcgctcgaatgggtggcctacgggccatgcgggcaccgcgaggtgtgttca 168 |||||||| ||||||| |||||||||||||| | |||| ||||||||||| || || Sbjct: 90764 tgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctcc 90823 Query: 169 acctgcgtcgtccgccttcgcttcgt 194 |||||||||| |||||| |||||||| Sbjct: 90824 acctgcgtcgcccgcctccgcttcgt 90849
>dbj|AK063298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E12, full insert sequence Length = 2616 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 109 tgcgcggacgcgctcgaatgggtggcctacgggccatgcgggcaccgcgaggtgtgttca 168 |||||||| ||||||| |||||||||||||| | |||| ||||||||||| || || Sbjct: 219 tgcgcggagccgctcgagtgggtggcctacggcgcctgcgcccaccgcgaggtctgctcc 278 Query: 169 acctgcgtcgtccgccttcgcttcgt 194 |||||||||| |||||| |||||||| Sbjct: 279 acctgcgtcgcccgcctccgcttcgt 304
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 308 aggcaagtgagggaaatgtggggg 331 |||||||||||||||||||||||| Sbjct: 184888 aggcaagtgagggaaatgtggggg 184911
>gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, complete sequence Length = 146616 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 actctctatgctgcatctgta 223 ||||||||||||||||||||| Sbjct: 78407 actctctatgctgcatctgta 78427
>gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, complete sequence Length = 188740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 actctctatgctgcatctgta 223 ||||||||||||||||||||| Sbjct: 142903 actctctatgctgcatctgta 142923
>emb|AL136369.7| Human DNA sequence from clone RP1-251M9 on chromosome 10 Contains three novel genes, complete sequence Length = 110952 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ccatgaggatacaaaggcata 362 ||||||||||||||||||||| Sbjct: 86927 ccatgaggatacaaaggcata 86947
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 gcggacgcgctcgaatgggtg 132 ||||||||||||||||||||| Sbjct: 86415 gcggacgcgctcgaatgggtg 86395
>emb|BX511120.8| Zebrafish DNA sequence from clone CH211-214C7 in linkage group 1, complete sequence Length = 204893 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgccg 376 ||||||||||| ||||||||||||| Sbjct: 6151 acaaaggcatagtttgatgatgccg 6127
>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete sequence Length = 181773 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tcacaaaggccatgggagatt 268 ||||||||||||||||||||| Sbjct: 121005 tcacaaaggccatgggagatt 121025
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16, complete sequence Length = 196875 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatgatgccg 376 ||||||||||| ||||||||||||| Sbjct: 158997 acaaaggcatattttgatgatgccg 159021
>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence Length = 171550 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 tcacaaaggccatgggagatt 268 ||||||||||||||||||||| Sbjct: 168422 tcacaaaggccatgggagatt 168402
>gb|AE017045.1| Yersinia pestis biovar Mediaevails str. 91001 plasmid pMT1, complete sequence Length = 106642 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ggagattacacaaaagtgat 281 |||||||||||||||||||| Sbjct: 54254 ggagattacacaaaagtgat 54235
>gb|BT017861.1| Zea mays clone EL01N0511G07.c mRNA sequence Length = 1094 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tctcgccttcttccccaccc 25 |||||||||||||||||||| Sbjct: 26 tctcgccttcttccccaccc 45
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atttctctgttttgcccact 306 |||||||||||||||||||| Sbjct: 106625 atttctctgttttgcccact 106606
>ref|XM_415964.1| PREDICTED: Gallus gallus similar to SVH-B (LOC417720), mRNA Length = 1586 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 atgccgatcattataagatgataa 394 ||||| |||||||||||||||||| Sbjct: 911 atgcctatcattataagatgataa 934
>gb|AC132237.3| Mus musculus BAC clone RP24-501M9 from chromosome 12, complete sequence Length = 212186 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cacaaaggccatgggagatt 268 |||||||||||||||||||| Sbjct: 134767 cacaaaggccatgggagatt 134748
>ref|XM_754192.1| Ustilago maydis 521 hypothetical protein (UM03138.1) partial mRNA Length = 621 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 ccttctcgccttcttccccaccct 26 |||||||||||||||| ||||||| Sbjct: 499 ccttctcgccttcttcaccaccct 476
>gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosome 17, complete sequence Length = 169571 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cacaaaggccatgggagatt 268 |||||||||||||||||||| Sbjct: 81147 cacaaaggccatgggagatt 81128
>emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in linkage group 5, complete sequence Length = 155089 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 33512 acaaaggcatattttgatgatgcc 33489 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 33129 acaaaggcatattttgatgatgcc 33106 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 32748 acaaaggcatattttgatgatgcc 32725
>emb|CR855865.5| Zebrafish DNA sequence from clone DKEY-267L2 in linkage group 3, complete sequence Length = 149895 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatga 371 |||||||||||||||||||| Sbjct: 78159 acaaaggcatactttgatga 78178
>emb|AL928686.2| Human DNA sequence from clone RP11-444D14 on chromosome 10 Contains the PRKG1 gene for protein kinase cGMP-dependent type I, complete sequence Length = 11812 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 3555 atgaggatacaaaggcatac 3536
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2 Contains a pseudogene similar to ribosomal protein L7a, STSs and GSSs, complete sequence Length = 111135 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 1248 atgaggatacaaaggcatac 1229
>gb|AF074611.1| Yersinia pestis KIM plasmid pMT-1, complete sequence Length = 100990 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ggagattacacaaaagtgat 281 |||||||||||||||||||| Sbjct: 99373 ggagattacacaaaagtgat 99392
>gb|AF053947.1| Yersinia pestis KIM plasmid pMT1, complete sequence Length = 100984 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ggagattacacaaaagtgat 281 |||||||||||||||||||| Sbjct: 49948 ggagattacacaaaagtgat 49929
>emb|AL117211.1|YPPMT1 Yersinia pestis CO92 plasmid pMT1 Length = 96210 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ggagattacacaaaagtgat 281 |||||||||||||||||||| Sbjct: 49884 ggagattacacaaaagtgat 49865
>emb|AJ698720.1| Yersinia pestis pG8786 plasmid Length = 137036 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ggagattacacaaaagtgat 281 |||||||||||||||||||| Sbjct: 53390 ggagattacacaaaagtgat 53371
>emb|BX901909.5| Zebrafish DNA sequence from clone CH211-42I14 in linkage group 3, complete sequence Length = 90216 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatga 371 |||||||||||||||||||| Sbjct: 24328 acaaaggcatactttgatga 24347
>emb|BX088597.18| Zebrafish DNA sequence from clone DKEY-171P23 in linkage group 5, complete sequence Length = 172098 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 58993 acaaaggcatattttgatgatgcc 58970 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 58610 acaaaggcatattttgatgatgcc 58587 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 58227 acaaaggcatattttgatgatgcc 58204 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 57844 acaaaggcatattttgatgatgcc 57821 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 57461 acaaaggcatattttgatgatgcc 57438 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 57080 acaaaggcatattttgatgatgcc 57057
>emb|BX005238.8| Zebrafish DNA sequence from clone DKEY-61P9 in linkage group 4 Contains three genes for a novel protein similar to vertebrate heat shock 70kDa protein 12A (Hspa12a), the gene for a novel protein similar to vertebrate guanylate nucleotide binding protein family, the gene for a novel protein containing a beta-ketoacyl synthase, N-terminal domain, six novel genes and five CpG islands, complete sequence Length = 166866 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atttctctgttttgcccact 306 |||||||||||||||||||| Sbjct: 23100 atttctctgttttgcccact 23081
>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete sequence Length = 207519 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 27921 atgaggatacaaaggcatac 27902
>gb|AC098964.4| Homo sapiens chromosome 8 clone RP11-141M14 map 8p21-p11, complete sequence Length = 151646 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 142847 atgaggatacaaaggcatac 142828
>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence Length = 172361 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 85427 atgaggatacaaaggcatac 85408
>dbj|AB048330.1| Equus caballus DNA, chromosome 18q13, microsatellite TKY19 Length = 526 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acctctgccgcctgccgaga 88 |||||||||||||||||||| Sbjct: 94 acctctgccgcctgccgaga 113
>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome Length = 135611 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cctttttcgccgccgccgac 49 |||||||||||||||||||| Sbjct: 44583 cctttttcgccgccgccgac 44602
>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence Length = 207503 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 179594 atgaggatacaaaggcatac 179613
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence Length = 148372 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 28809 atgaggatacaaaggcatac 28790
>emb|AL954694.13| Zebrafish DNA sequence from clone CH211-219F7 in linkage group 5, complete sequence Length = 111431 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatga 371 |||||||||||||||||||| Sbjct: 69787 acaaaggcatactttgatga 69806
>emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 in linkage group 19, complete sequence Length = 230267 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 30238 acaaaggcatagtttgatgatgcc 30261
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcgccgccgccgacccctct 55 |||||||||||||||||||| Sbjct: 1494441 tcgccgccgccgacccctct 1494460
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atttctctgttttgcccact 306 |||||||||||||||||||| Sbjct: 10917105 atttctctgttttgcccact 10917086
>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence Length = 163386 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 atgaggatacaaaggcatac 363 |||||||||||||||||||| Sbjct: 155565 atgaggatacaaaggcatac 155546
>gb|AC079585.3| Homo sapiens BAC clone RP11-161A24 from 2, complete sequence Length = 63107 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ccatgaggatacaaaggcat 361 |||||||||||||||||||| Sbjct: 44064 ccatgaggatacaaaggcat 44045
>emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 in linkage group 5, complete sequence Length = 168064 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 99788 acaaaggcatattttgatgatgcc 99811 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 99407 acaaaggcatattttgatgatgcc 99430 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatgatgcc 375 ||||||||||| |||||||||||| Sbjct: 99024 acaaaggcatattttgatgatgcc 99047
>dbj|AK066915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090C23, full insert sequence Length = 987 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcgccgccgccgacccctct 55 |||||||||||||||||||| Sbjct: 111 tcgccgccgccgacccctct 92
>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4, complete sequence Length = 166476 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atttctctgttttgcccact 306 |||||||||||||||||||| Sbjct: 37730 atttctctgttttgcccact 37711
>dbj|AK061334.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B06, full insert sequence Length = 970 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcgccgccgccgacccctct 55 |||||||||||||||||||| Sbjct: 116 tcgccgccgccgacccctct 97
>emb|AL591669.5| Zebrafish DNA sequence from clone BUSM1-163L24 in linkage group 3, complete sequence Length = 107839 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 acaaaggcatactttgatga 371 |||||||||||||||||||| Sbjct: 54062 acaaaggcatactttgatga 54081
>emb|BX510318.4| Mouse DNA sequence from clone RP23-29O1 on chromosome 4, complete sequence Length = 58041 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cacaaaggccatgggagatt 268 |||||||||||||||||||| Sbjct: 32843 cacaaaggccatgggagatt 32862
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 atttctctgttttgcccact 306 |||||||||||||||||||| Sbjct: 10996294 atttctctgttttgcccact 10996275
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcgccgccgccgacccctct 55 |||||||||||||||||||| Sbjct: 1494441 tcgccgccgccgacccctct 1494460
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcgccgccgccgacccctct 55 |||||||||||||||||||| Sbjct: 131291 tcgccgccgccgacccctct 131272
>emb|AL808116.6| Mouse DNA sequence from clone RP23-97H1 on chromosome X, complete sequence Length = 200519 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cacaaaggccatgggagatt 268 |||||||||||||||||||| Sbjct: 190465 cacaaaggccatgggagatt 190446 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,686,459 Number of Sequences: 3902068 Number of extensions: 3686459 Number of successful extensions: 68686 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68316 Number of HSP's gapped (non-prelim): 365 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)