ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl20b10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467966.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1675 Score = 404 bits (204), Expect = e-110 Identities = 272/295 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 154 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 213 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 214 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 273 Query: 271 tccctcctcctcatcacgctccgccaggtgaacagggagatactgatggaggaggataag 330 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | | Sbjct: 274 tccctcctcctcatcacgcttcgccaggcgaacagggagatactgatggaggaggacagg 333 Query: 331 gtgaagggggagacggaggcggccaaggcgcccgtcgactccacgacgctgaggctgcac 390 ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 334 gtgaaggcggagacggaggcggcgaaggcgcccgtggactccacgacgctgcagctgcac 393 Query: 391 aacctgctgtacgagaagaaccactacgtgaaggccatcangtcgtgcctcgact 445 ||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 394 aaccttctgtacgagaagaaccactacgtgaaggccattagggcgtgcctcgact 448 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 76 gcggccgaagccatggatgtcgaggcgccggcgcg 110
>ref|XM_506992.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A11.24 mRNA Length = 1691 Score = 404 bits (204), Expect = e-110 Identities = 272/295 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 160 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 219 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 220 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 279 Query: 271 tccctcctcctcatcacgctccgccaggtgaacagggagatactgatggaggaggataag 330 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | | Sbjct: 280 tccctcctcctcatcacgcttcgccaggcgaacagggagatactgatggaggaggacagg 339 Query: 331 gtgaagggggagacggaggcggccaaggcgcccgtcgactccacgacgctgaggctgcac 390 ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 340 gtgaaggcggagacggaggcggcgaaggcgcccgtggactccacgacgctgcagctgcac 399 Query: 391 aacctgctgtacgagaagaaccactacgtgaaggccatcangtcgtgcctcgact 445 ||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 400 aaccttctgtacgagaagaaccactacgtgaaggccattagggcgtgcctcgact 454 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 82 gcggccgaagccatggatgtcgaggcgccggcgcg 116
>dbj|AK103640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134I01, full insert sequence Length = 1691 Score = 404 bits (204), Expect = e-110 Identities = 272/295 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 160 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 219 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 220 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 279 Query: 271 tccctcctcctcatcacgctccgccaggtgaacagggagatactgatggaggaggataag 330 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | | Sbjct: 280 tccctcctcctcatcacgcttcgccaggcgaacagggagatactgatggaggaggacagg 339 Query: 331 gtgaagggggagacggaggcggccaaggcgcccgtcgactccacgacgctgaggctgcac 390 ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 340 gtgaaggcggagacggaggcggcgaaggcgcccgtggactccacgacgctgcagctgcac 399 Query: 391 aacctgctgtacgagaagaaccactacgtgaaggccatcangtcgtgcctcgact 445 ||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 400 aaccttctgtacgagaagaaccactacgtgaaggccattagggcgtgcctcgact 454 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 82 gcggccgaagccatggatgtcgaggcgccggcgcg 116
>dbj|AK063351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C01, full insert sequence Length = 1675 Score = 404 bits (204), Expect = e-110 Identities = 272/295 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 154 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 213 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 214 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 273 Query: 271 tccctcctcctcatcacgctccgccaggtgaacagggagatactgatggaggaggataag 330 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | | Sbjct: 274 tccctcctcctcatcacgcttcgccaggcgaacagggagatactgatggaggaggacagg 333 Query: 331 gtgaagggggagacggaggcggccaaggcgcccgtcgactccacgacgctgaggctgcac 390 ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 334 gtgaaggcggagacggaggcggcgaaggcgcccgtggactccacgacgctgcagctgcac 393 Query: 391 aacctgctgtacgagaagaaccactacgtgaaggccatcangtcgtgcctcgact 445 ||||| |||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 394 aaccttctgtacgagaagaaccactacgtgaaggccattagggcgtgcctcgact 448 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 76 gcggccgaagccatggatgtcgaggcgccggcgcg 110
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 208 bits (105), Expect = 1e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 32313986 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 32314045 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 32314046 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 32314105 Query: 271 tccctcctcctcatcacgctccgccaggt 299 |||||||||||||||||||| |||||||| Sbjct: 32314106 tccctcctcctcatcacgcttcgccaggt 32314134 Score = 206 bits (104), Expect = 4e-50 Identities = 139/151 (92%) Strand = Plus / Plus Query: 295 caggtgaacagggagatactgatggaggaggataaggtgaagggggagacggaggcggcc 354 |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 32314224 caggcgaacagggagatactgatggaggaggacagggtgaaggcggagacggaggcggcg 32314283 Query: 355 aaggcgcccgtcgactccacgacgctgaggctgcacaacctgctgtacgagaagaaccac 414 ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct: 32314284 aaggcgcccgtggactccacgacgctgcagctgcacaaccttctgtacgagaagaaccac 32314343 Query: 415 tacgtgaaggccatcangtcgtgcctcgact 445 |||||||||||||| | | |||||||||||| Sbjct: 32314344 tacgtgaaggccattagggcgtgcctcgact 32314374 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 32313908 gcggccgaagccatggatgtcgaggcgccggcgcg 32313942
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 208 bits (105), Expect = 1e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 157999 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 158058 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 158059 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 158118 Query: 271 tccctcctcctcatcacgctccgccaggt 299 |||||||||||||||||||| |||||||| Sbjct: 158119 tccctcctcctcatcacgcttcgccaggt 158147 Score = 206 bits (104), Expect = 4e-50 Identities = 139/151 (92%) Strand = Plus / Plus Query: 295 caggtgaacagggagatactgatggaggaggataaggtgaagggggagacggaggcggcc 354 |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 158237 caggcgaacagggagatactgatggaggaggacagggtgaaggcggagacggaggcggcg 158296 Query: 355 aaggcgcccgtcgactccacgacgctgaggctgcacaacctgctgtacgagaagaaccac 414 ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct: 158297 aaggcgcccgtggactccacgacgctgcagctgcacaaccttctgtacgagaagaaccac 158356 Query: 415 tacgtgaaggccatcangtcgtgcctcgact 445 |||||||||||||| | | |||||||||||| Sbjct: 158357 tacgtgaaggccattagggcgtgcctcgact 158387 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 157921 gcggccgaagccatggatgtcgaggcgccggcgcg 157955
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 208 bits (105), Expect = 1e-50 Identities = 138/149 (92%) Strand = Plus / Plus Query: 151 tccccccacgacctcctcgccgagacccgcgcctccgtcgaggaggtcgccgcccgcata 210 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct: 89818 tccccccacgacctcctcgcggagacccgcgcctccgtggaggaggtcgccgcccggatc 89877 Query: 211 ctcgccatcaagaaggacggcgcccccaagtccgagctccgcgagctcgtcgcgcagatg 270 ||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| Sbjct: 89878 ctcgccatcaagaaggacgacgcccccagaaccgagctccgggagctcgtcgcccagatg 89937 Query: 271 tccctcctcctcatcacgctccgccaggt 299 |||||||||||||||||||| |||||||| Sbjct: 89938 tccctcctcctcatcacgcttcgccaggt 89966 Score = 206 bits (104), Expect = 4e-50 Identities = 139/151 (92%) Strand = Plus / Plus Query: 295 caggtgaacagggagatactgatggaggaggataaggtgaagggggagacggaggcggcc 354 |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct: 90056 caggcgaacagggagatactgatggaggaggacagggtgaaggcggagacggaggcggcg 90115 Query: 355 aaggcgcccgtcgactccacgacgctgaggctgcacaacctgctgtacgagaagaaccac 414 ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct: 90116 aaggcgcccgtggactccacgacgctgcagctgcacaaccttctgtacgagaagaaccac 90175 Query: 415 tacgtgaaggccatcangtcgtgcctcgact 445 |||||||||||||| | | |||||||||||| Sbjct: 90176 tacgtgaaggccattagggcgtgcctcgact 90206 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 gcggcggaagccatggacgtcgaggcaccggcgcg 116 ||||| ||||||||||| |||||||| |||||||| Sbjct: 89740 gcggccgaagccatggatgtcgaggcgccggcgcg 89774
>emb|CR406345.1| Gallus gallus finished cDNA, clone ChEST860c20 Length = 1175 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 accatttccactcccacttccgg 30 ||||||||||||||||||||||| Sbjct: 909 accatttccactcccacttccgg 887
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 181 gcctccgtcgaggaggtcgccgc 203 ||||||||||||||||||||||| Sbjct: 5954584 gcctccgtcgaggaggtcgccgc 5954562
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 ggtgaagggggagacggaggcg 351 |||||||||||||||||||||| Sbjct: 308907 ggtgaagggggagacggaggcg 308886 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 ggtgaagggggagacggagg 349 |||||||||||||||||||| Sbjct: 306306 ggtgaagggggagacggagg 306287
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 cgagctccgcgagctcgtcgc 263 ||||||||||||||||||||| Sbjct: 145647 cgagctccgcgagctcgtcgc 145627 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 cgagctccgcgagctcgtcgc 263 ||||||||||||||||||||| Sbjct: 128362 cgagctccgcgagctcgtcgc 128382
>ref|XM_482570.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agctccgcgagctcgtcgcgc 265 ||||||||||||||||||||| Sbjct: 278 agctccgcgagctcgtcgcgc 298
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 ccccacgacctcctcgccgag 174 ||||||||||||||||||||| Sbjct: 2414281 ccccacgacctcctcgccgag 2414301
>ref|XM_957186.1| Neurospora crassa OR74A hypothetical protein (NCU07693.1) partial mRNA Length = 3411 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 cggaagccatggacgtcgagg 106 ||||||||||||||||||||| Sbjct: 2699 cggaagccatggacgtcgagg 2679
>ref|XM_328398.1| Neurospora crassa OR74A hypothetical protein (NCU07693.1) partial mRNA Length = 3411 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 cggaagccatggacgtcgagg 106 ||||||||||||||||||||| Sbjct: 2699 cggaagccatggacgtcgagg 2679
>ref|XM_546606.2| PREDICTED: Canis familiaris similar to period 1 (LOC489488), mRNA Length = 4266 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 tggcaaccgcggcggcggcggaagc 92 |||| |||||||||||||||||||| Sbjct: 270 tggcgaccgcggcggcggcggaagc 294
>gb|AY349011.1| Burkholderia cepacia phage Bcep22, complete genome Length = 63882 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agctccgcgagctcgtcgcgc 265 ||||||||||||||||||||| Sbjct: 17065 agctccgcgagctcgtcgcgc 17085
>ref|XM_500368.1| Yarrowia lipolytica CLIB122, YALI0B00990g predicted mRNA Length = 1926 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ctgtacgagaagaaccactac 417 ||||||||||||||||||||| Sbjct: 253 ctgtacgagaagaaccactac 273
>gb|AC010842.5|AC010842 Drosophila melanogaster, chromosome 2R, region 59F5-59F8, BAC clone BACR02E09, complete sequence Length = 175118 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ccatttccactcccacttccg 29 ||||||||||||||||||||| Sbjct: 162971 ccatttccactcccacttccg 162991
>gb|AC009182.4|AC009182 Drosophila melanogaster, chromosome 2R, region 60A2-60A3, BAC clone BACR05F24, complete sequence Length = 147086 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ccatttccactcccacttccg 29 ||||||||||||||||||||| Sbjct: 44084 ccatttccactcccacttccg 44104
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agctccgcgagctcgtcgcgc 265 ||||||||||||||||||||| Sbjct: 21148560 agctccgcgagctcgtcgcgc 21148580
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agctccgcgagctcgtcgcgc 265 ||||||||||||||||||||| Sbjct: 119770 agctccgcgagctcgtcgcgc 119790
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ccatttccactcccacttccg 29 ||||||||||||||||||||| Sbjct: 340569 ccatttccactcccacttccg 340589
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 ctgtacgagaagaaccactac 417 ||||||||||||||||||||| Sbjct: 166175 ctgtacgagaagaaccactac 166155
>emb|AJ277735.1|SSC277735 Sus scrofa per1 gene for Period protein, exons 2-14 Length = 5040 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 tggcaaccgcggcggcggcggaagc 92 |||| |||||||||||||||||||| Sbjct: 1016 tggcgaccgcggcggcggcggaagc 1040
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccgcccagcgccaccaccgc 137 |||||||||||||||||||| Sbjct: 3574759 ccgcccagcgccaccaccgc 3574778
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cgccaccaccgcgccaaagc 145 |||||||||||||||||||| Sbjct: 480625 cgccaccaccgcgccaaagc 480644
>gb|DQ223042.1| Murine norovirus 3 polyprotein, capsid protein, and small basic protein genes, complete cds Length = 7383 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cctcctcctcatcacgctcc 292 |||||||||||||||||||| Sbjct: 2802 cctcctcctcatcacgctcc 2783
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 accgcggcggcggcggaagc 92 |||||||||||||||||||| Sbjct: 771282 accgcggcggcggcggaagc 771301
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccgcggcggcggcggaagcc 93 |||||||||||||||||||| Sbjct: 1038986 ccgcggcggcggcggaagcc 1039005
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 138795 ggcaaccgcggcggcggcgg 138776
>gb|AY813888.1| Schistosoma japonicum SJCHGC04485 protein mRNA, complete cds Length = 469 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gatgtccctcctcctcatca 286 |||||||||||||||||||| Sbjct: 172 gatgtccctcctcctcatca 153
>gb|AC114676.7| Mus musculus chromosome 5, clone RP24-211H1, complete sequence Length = 153903 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgcccagcgccaccaccgc 137 |||||||||||||||||||| Sbjct: 60603 ccgcccagcgccaccaccgc 60584
>ref|XM_752675.1| Ustilago maydis 521 hypothetical protein (UM01621.1) partial mRNA Length = 1593 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 aggcgcccgtcgactccacg 375 |||||||||||||||||||| Sbjct: 1321 aggcgcccgtcgactccacg 1302
>ref|XM_390035.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09859.1) partial mRNA Length = 1947 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ctccccccacgacctcctcg 169 |||||||||||||||||||| Sbjct: 80 ctccccccacgacctcctcg 61
>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence Length = 144545 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccgcccagcgccaccaccgc 137 |||||||||||||||||||| Sbjct: 134299 ccgcccagcgccaccaccgc 134280
>gb|AY935268.1| Antirrhinum majus farinelli (FAR) gene, complete sequence Length = 54307 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 aggtgaagggggagacggaggcgg 352 ||||||||| |||||||||||||| Sbjct: 53001 aggtgaaggaggagacggaggcgg 52978
>gb|AC091204.3| Drosophila melanogaster 3L NOVECTOR RP98-27G13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185825 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acccattaccatttccactcccacttcc 28 ||||| ||||||||||| |||||||||| Sbjct: 81244 acccagtaccatttccattcccacttcc 81271
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cgcccagcgccaccaccgcg 138 |||||||||||||||||||| Sbjct: 81715 cgcccagcgccaccaccgcg 81734
>tpg|BK002805.1| TPA: TPA_inf: Drosophila melanogaster HDC15392 (HDC15392) gene, complete cds Length = 338 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cattaccatttccactccca 23 |||||||||||||||||||| Sbjct: 155 cattaccatttccactccca 136
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tccgcgagctcgtcgcgcag 267 |||||||||||||||||||| Sbjct: 386470 tccgcgagctcgtcgcgcag 386489
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ccgcggcggcggcggaagcc 93 |||||||||||||||||||| Sbjct: 7419847 ccgcggcggcggcggaagcc 7419828
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 23122792 ggcaaccgcggcggcggcgg 23122773
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 29461048 ggcaaccgcggcggcggcgg 29461067
>gb|AC008366.3|AC008366 Drosophila melanogaster, chromosome 3R, region 96A-96A, BAC clone BACR13M04, complete sequence Length = 172282 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cattaccatttccactccca 23 |||||||||||||||||||| Sbjct: 52935 cattaccatttccactccca 52916
>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone BACR04E17, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cattaccatttccactccca 23 |||||||||||||||||||| Sbjct: 179165 cattaccatttccactccca 179146
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 acagggagatactgatggaggagg 325 ||||||||||||| |||||||||| Sbjct: 1512149 acagggagatacttatggaggagg 1512126
>gb|AE009686.1| Brucella melitensis 16M chromosome II, section 48 of 107 of the complete sequence Length = 10687 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 accgcggcggcggcggaagc 92 |||||||||||||||||||| Sbjct: 3464 accgcggcggcggcggaagc 3445
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 171929 ggcaaccgcggcggcggcgg 171948
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 accgcggcggcggcggaagc 92 |||||||||||||||||||| Sbjct: 445886 accgcggcggcggcggaagc 445867
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 25554 ggcaaccgcggcggcggcgg 25573
>dbj|AK100915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D21, full insert sequence Length = 773 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 75 ggcaaccgcggcggcggcgg 94
>dbj|AK069189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004N19, full insert sequence Length = 1343 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 41 ggcaaccgcggcggcggcgg 22
>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the complete sequence Length = 206741 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 cattaccatttccactccca 23 |||||||||||||||||||| Sbjct: 179421 cattaccatttccactccca 179402
>emb|CR974479.17| Pig DNA sequence from clone PigE-150P18 on chromosome 7, complete sequence Length = 152730 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ggaggataaggtgaaggggg 340 |||||||||||||||||||| Sbjct: 53962 ggaggataaggtgaaggggg 53943
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acccattaccatttccactcccacttcc 28 ||||| ||||||||||| |||||||||| Sbjct: 189045 acccagtaccatttccattcccacttcc 189072
>gb|U82397.1|RSU82397 Rhodobacter sphaeroides sigma-32 homolog (rpoH) gene, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccgcggcggcggcggaagcc 93 |||||||||||||||||||| Sbjct: 103 ccgcggcggcggcggaagcc 122
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcaaccgcggcggcggcgg 88 |||||||||||||||||||| Sbjct: 23432702 ggcaaccgcggcggcggcgg 23432683
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ccgcggcggcggcggaagcc 93 |||||||||||||||||||| Sbjct: 7419726 ccgcggcggcggcggaagcc 7419707
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 98782 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ccgcggcggcggcggaagcc 93 |||||||||||||||||||| Sbjct: 9523 ccgcggcggcggcggaagcc 9504
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 accgcggcggcggcggaagc 92 |||||||||||||||||||| Sbjct: 445899 accgcggcggcggcggaagc 445880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,643,273 Number of Sequences: 3902068 Number of extensions: 3643273 Number of successful extensions: 116409 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114680 Number of HSP's gapped (non-prelim): 1729 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
