ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl20b08 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 102 bits (255), Expect = 4e-22 Identities = 54/71 (76%), Positives = 54/71 (76%) Frame = +1 Query: 292 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 471 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 472 KRLFGSNVLVS 504 KRLFGSNVLVS Sbjct: 61 KRLFGSNVLVS 71
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 100 bits (249), Expect = 2e-21 Identities = 53/71 (74%), Positives = 53/71 (74%) Frame = +1 Query: 292 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 471 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 472 KRLFGSNVLVS 504 K LFGSNVLVS Sbjct: 61 KPLFGSNVLVS 71
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 56.6 bits (135), Expect = 4e-08 Identities = 27/30 (90%), Positives = 29/30 (96%) Frame = +1 Query: 415 EIDEDLHSRQLAVYGRETMKRLFGSNVLVS 504 EIDEDLHSRQLAVYGRETM+RLF S+VLVS Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVS 74
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%) Frame = +1 Query: 397 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVS 504 MA+ G+E IDE L+SRQL V G E MKRL S+VLVS Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVS 78
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 2/38 (5%) Frame = +1 Query: 397 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVS 504 MA+ G+E IDE L+SRQL V G E MKRL S+VLVS Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVS 78
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 39.3 bits (90), Expect = 0.006 Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 2/38 (5%) Frame = +1 Query: 397 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVS 504 MA+ G+E IDE L+SRQL V G E MK L S+VLVS Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVS 78
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 37.4 bits (85), Expect = 0.023 Identities = 18/30 (60%), Positives = 22/30 (73%) Frame = +1 Query: 412 NEIDEDLHSRQLAVYGRETMKRLFGSNVLV 501 N IDE L+SRQL V G E MK++ SNVL+ Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLI 42
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 35.8 bits (81), Expect = 0.067 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = +1 Query: 415 EIDEDLHSRQLAVYGRETMKRLFGSNVLV 501 EIDE L+SRQL V G+E M ++ SNVL+ Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLI 41
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 34.3 bits (77), Expect = 0.20 Identities = 16/29 (55%), Positives = 22/29 (75%) Frame = +1 Query: 418 IDEDLHSRQLAVYGRETMKRLFGSNVLVS 504 +DE+L+SRQL V G M+R+ G+ VLVS Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVS 38
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 2.2 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 480 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>NUPL_XENLA (P05221) Nucleoplasmin| Length = 200 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/77 (24%), Positives = 30/77 (38%) Frame = -1 Query: 276 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPGTSXXXXXXXXXXXGRADPAE 97 A E + E++ +G E + + PP+ + RP + + D + Sbjct: 119 AMEEDYSWAEEEDEGEAEGEEEEEEEEDQESPPKAVKRPAATKKAGQAKKKKLDKEDESS 178 Query: 96 LTLDSPVASGKEAGEGR 46 DSP GK AG GR Sbjct: 179 EE-DSPTKKGKGAGRGR 194
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 429 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 6.3 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 474 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 6.3 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 480 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 6.3 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 480 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 429 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 334 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding| factor 1) (Cellular transcription factor ILF-1) Length = 655 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 276 AEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLHRPG 157 ++E G R + A + GR P ++ PPR+LH PG Sbjct: 43 SDEEALGDHRPQLVAGLGGREHGPLELHLPAPPRDLHAPG 82
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 429 PAQSPARRLWPRDHEA 476 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +3 Query: 429 PAQSPARRLWPRDHEA 476 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,937,321 Number of Sequences: 219361 Number of extensions: 770310 Number of successful extensions: 2720 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2717 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
