ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, com... 46 0.048
2gb|AC114622.12| Mus musculus chromosome 5, clone RP24-103L18, co... 46 0.048
3ref|XM_580347.2| PREDICTED: Bos taurus similar to arginine vasop... 44 0.19
4ref|NM_015576.1| Homo sapiens CAZ-associated structural protein ... 44 0.19
5gb|BC112391.1| Homo sapiens CAZ-associated structural protein, m... 44 0.19
6gb|BC111550.1| Homo sapiens CAZ-associated structural protein, m... 44 0.19
7gb|AC098478.2| Homo sapiens chromosome 3 clone RP11-750K11, comp... 44 0.19
8dbj|AB002376.2| Human mRNA for KIAA0378 gene, partial cds 44 0.19
9gb|AF295721.1| Uncultured bacterium clone SR7 LigH-like protein ... 42 0.76
10gb|AF295720.1| Uncultured bacterium clone SR9 LigH-like protein ... 42 0.76
11gb|AF295717.1| Uncultured bacterium clone SR4 LigH-like protein ... 42 0.76
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.76
13emb|X96862.1|HVGEODBIP H.virescens mRNA for general odorant bind... 42 0.76
14emb|AJ494805.1|UBA494805 Uncultured bacterium partial FTHFS gene... 42 0.76
15emb|AJ494781.1|UBA494781 Uncultured bacterium partial FTHFS gene... 42 0.76
16emb|AJ494780.1|UBA494780 Uncultured bacterium partial FTHFS gene... 42 0.76
17emb|AJ494778.1|UBA494778 Uncultured bacterium partial FTHFS gene... 42 0.76
18emb|AJ494777.1|UBA494777 Uncultured bacterium partial FTHFS gene... 42 0.76
19emb|AJ494770.1|UBA494770 Uncultured bacterium partial FTHFS gene... 42 0.76
20emb|AJ494769.1|UBA494769 Uncultured bacterium partial FTHFS gene... 42 0.76
21emb|AJ494765.1|UBA494765 Uncultured bacterium partial FTHFS gene... 42 0.76
22emb|AJ494763.1|UBA494763 Uncultured bacterium partial FTHFS gene... 42 0.76
23emb|AJ494762.1|UBA494762 Uncultured bacterium partial FTHFS gene... 42 0.76
24emb|AJ494761.1|UBA494761 Uncultured bacterium partial FTHFS gene... 42 0.76
25gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.76
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
27gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.76
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 0.76
29dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.76
30ref|XM_529516.1| PREDICTED: Pan troglodytes LOC452192 (LOC452192... 40 3.0
31gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
32gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 3.0
33gb|AY386263.1| Orf virus strain OV-IA82, complete genome 40 3.0
34gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Canc... 40 3.0
35gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 3.0
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
37gb|AY425401.1| Placobdella parasitica 28S ribosomal RNA gene, pa... 40 3.0
38gb|AY425397.1| Placobdella biannulata 28S ribosomal RNA gene, pa... 40 3.0
39gb|AY425364.1| Placobdella picta 28S ribosomal RNA gene, partial... 40 3.0
40dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
41dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.0
42gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 3.0
43gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.0
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.0
45gb|M86351.1|STMTRIACY Streptomyces sp. triacylglycerol acylhydro... 40 3.0
46emb|Z97588.1|XAZ97588 Xyronotus aztecus nuclear 18S rRNA gene (p... 40 3.0
47dbj|AB042326.1| Homo sapiens C4ST mRNA for chondroitin 4-sulfotr... 40 3.0 
>gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, complete sequence
          Length = 208233

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 185   gcgggcgcagggggcggtcgcgcccgc 211
             ||||||| |||||||||||||||||||
Sbjct: 42679 gcgggcggagggggcggtcgcgcccgc 42705
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>gb|AC114622.12| Mus musculus chromosome 5, clone RP24-103L18, complete sequence
          Length = 162467

 Score = 46.1 bits (23), Expect = 0.048
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 185    gcgggcgcagggggcggtcgcgcccgc 211
              ||||||| |||||||||||||||||||
Sbjct: 160908 gcgggcggagggggcggtcgcgcccgc 160934
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>ref|XM_580347.2| PREDICTED: Bos taurus similar to arginine vasopressin receptor 1A
            (LOC538439), mRNA
          Length = 1883

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 205  cgcccgcgccctcggcgggggc 226
            ||||||||||||||||||||||
Sbjct: 1207 cgcccgcgccctcggcgggggc 1186
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>ref|NM_015576.1| Homo sapiens CAZ-associated structural protein (CAST1), mRNA
          Length = 6138

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 143 gctcctgctcctcctggccgcc 164
           ||||||||||||||||||||||
Sbjct: 29  gctcctgctcctcctggccgcc 50
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>gb|BC112391.1| Homo sapiens CAZ-associated structural protein, mRNA (cDNA clone
           MGC:133064 IMAGE:40008962), complete cds
          Length = 3644

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 143 gctcctgctcctcctggccgcc 164
           ||||||||||||||||||||||
Sbjct: 3   gctcctgctcctcctggccgcc 24
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>gb|BC111550.1| Homo sapiens CAZ-associated structural protein, mRNA (cDNA clone
           MGC:133063 IMAGE:40008953), complete cds
          Length = 3831

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 143 gctcctgctcctcctggccgcc 164
           ||||||||||||||||||||||
Sbjct: 3   gctcctgctcctcctggccgcc 24
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>gb|AC098478.2| Homo sapiens chromosome 3 clone RP11-750K11, complete sequence
          Length = 217346

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 143   gctcctgctcctcctggccgcc 164
             ||||||||||||||||||||||
Sbjct: 72257 gctcctgctcctcctggccgcc 72236
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>dbj|AB002376.2| Human mRNA for KIAA0378 gene, partial cds
          Length = 6137

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 143 gctcctgctcctcctggccgcc 164
           ||||||||||||||||||||||
Sbjct: 29  gctcctgctcctcctggccgcc 50
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>gb|AF295721.1| Uncultured bacterium clone SR7 LigH-like protein gene, partial cds
          Length = 1053

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 524 tccgcccccagatcggcgccg 504
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>gb|AF295720.1| Uncultured bacterium clone SR9 LigH-like protein gene, partial cds
          Length = 1050

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 521 tccgcccccagatcggcgccg 501
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>gb|AF295717.1| Uncultured bacterium clone SR4 LigH-like protein gene, partial cds
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 79       atgggcgatctgtgagccgcg 99
                |||||||||||||||||||||
Sbjct: 12281945 atgggcgatctgtgagccgcg 12281965
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>emb|X96862.1|HVGEODBIP H.virescens mRNA for general odorant binding protein 1
          Length = 876

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 147 ctgctcctcctggccgccgcggcgc 171
           |||||||| ||||||||||||||||
Sbjct: 25  ctgctcctgctggccgccgcggcgc 49
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>emb|AJ494805.1|UBA494805 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone SS3
          Length = 1059

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494781.1|UBA494781 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI55G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494780.1|UBA494780 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI53G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494778.1|UBA494778 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI51G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494777.1|UBA494777 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI50G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494770.1|UBA494770 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI25G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494769.1|UBA494769 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI22G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494765.1|UBA494765 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI10G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494763.1|UBA494763 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI5G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494762.1|UBA494762 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI4G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494761.1|UBA494761 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI2G
          Length = 1056

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  tccgcccccagatcggcgccg 65
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 141     gcgctcctgctcctcctggccgccgcggc 169
               |||||||||||| ||| ||||||||||||
Sbjct: 2336473 gcgctcctgctcgtccgggccgccgcggc 2336445
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 79       atgggcgatctgtgagccgcg 99
                |||||||||||||||||||||
Sbjct: 12278708 atgggcgatctgtgagccgcg 12278728
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    atgggcgatctgtgagccgcg 99
             |||||||||||||||||||||
Sbjct: 51478 atgggcgatctgtgagccgcg 51498
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 183     gcgcgggcgcagggggcggtcgcgcccgc 211
               ||||||||||||||| ||||| |||||||
Sbjct: 1216623 gcgcgggcgcaggggccggtcacgcccgc 1216651
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
           insert sequence
          Length = 3171

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 79  atgggcgatctgtgagccgcg 99
           |||||||||||||||||||||
Sbjct: 184 atgggcgatctgtgagccgcg 204
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>ref|XM_529516.1| PREDICTED: Pan troglodytes LOC452192 (LOC452192), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 tgcgcgctcctgctcctcct 157
           ||||||||||||||||||||
Sbjct: 815 tgcgcgctcctgctcctcct 796
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>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10,
              complete sequence
          Length = 158833

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 143    gctcctgctcctcctggccgccgc 166
              ||||||||||||||| ||||||||
Sbjct: 128019 gctcctgctcctcctcgccgccgc 128042
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 208     ccgcgccctcggcgggggccgcgt 231
               |||||||||||||||| |||||||
Sbjct: 2101936 ccgcgccctcggcgggcgccgcgt 2101959
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>gb|AY386263.1| Orf virus strain OV-IA82, complete genome
          Length = 137241

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   cgcgcccgcgccctcggcgg 222
             ||||||||||||||||||||
Sbjct: 49425 cgcgcccgcgccctcggcgg 49444
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>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178905

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgcgcgctcctgctcctcct 157
              ||||||||||||||||||||
Sbjct: 103194 tgcgcgctcctgctcctcct 103213
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     gcgccctcggcgggggccgc 229
               ||||||||||||||||||||
Sbjct: 4526740 gcgccctcggcgggggccgc 4526721
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 143      gctcctgctcctcctggccgccgc 166
                ||||||||||||||| ||||||||
Sbjct: 18392654 gctcctgctcctcctcgccgccgc 18392677
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>gb|AY425401.1| Placobdella parasitica 28S ribosomal RNA gene, partial sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 139 gcgcgctcctgctcctcctggccgccgcggcg 170
           ||||||||||||||| ||| |||| |||||||
Sbjct: 156 gcgcgctcctgctccgcctcgccgacgcggcg 125
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>gb|AY425397.1| Placobdella biannulata 28S ribosomal RNA gene, partial sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 139 gcgcgctcctgctcctcctggccgccgcggcg 170
           ||||||||||||||| ||| |||| |||||||
Sbjct: 158 gcgcgctcctgctccgcctcgccgacgcggcg 127
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>gb|AY425364.1| Placobdella picta 28S ribosomal RNA gene, partial sequence
          Length = 261

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 139 gcgcgctcctgctcctcctggccgccgcggcg 170
           ||||||||||||||| ||| |||| |||||||
Sbjct: 165 gcgcgctcctgctccgcctcgccgacgcggcg 134
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>dbj|AK098929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020C01, full
           insert sequence
          Length = 3367

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 gctcctgctcctcctggccgccgc 166
           ||||||||||||||| ||||||||
Sbjct: 113 gctcctgctcctcctcgccgccgc 136
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>dbj|AK068415.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H23, full
           insert sequence
          Length = 3413

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 gctcctgctcctcctggccgccgc 166
           ||||||||||||||| ||||||||
Sbjct: 159 gctcctgctcctcctcgccgccgc 182
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 4       ccgccacgcgctgcccgccg 23
               ||||||||||||||||||||
Sbjct: 1061044 ccgccacgcgctgcccgccg 1061025
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     ggtcgcgcccgcgccctcgg 219
               ||||||||||||||||||||
Sbjct: 2000424 ggtcgcgcccgcgccctcgg 2000443
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 143      gctcctgctcctcctggccgccgc 166
                ||||||||||||||| ||||||||
Sbjct: 18552055 gctcctgctcctcctcgccgccgc 18552078
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>gb|M86351.1|STMTRIACY Streptomyces sp. triacylglycerol acylhydrolase (lipA) and lipA
            transcriptional activator (lipR) genes, complete cds
          Length = 6117

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 146  cctgctcctcctggccgccgcggc 169
            ||||||||| ||||||||||||||
Sbjct: 2291 cctgctcctgctggccgccgcggc 2314
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>emb|Z97588.1|XAZ97588 Xyronotus aztecus nuclear 18S rRNA gene (partial)
          Length = 1872

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 197 ggcggtcgcgcccgcgccctcggc 220
           ||||||||||| ||||||||||||
Sbjct: 737 ggcggtcgcgcacgcgccctcggc 714
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>dbj|AB042326.1| Homo sapiens C4ST mRNA for chondroitin 4-sulfotranseferase,
           complete cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 tgcgcgctcctgctcctcct 157
           ||||||||||||||||||||
Sbjct: 156 tgcgcgctcctgctcctcct 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,275,243
Number of Sequences: 3902068
Number of extensions: 1275243
Number of successful extensions: 48955
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47957
Number of HSP's gapped (non-prelim): 998
length of query: 233
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 211
effective length of database: 17,147,199,772
effective search space: 3618059151892
effective search space used: 3618059151892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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