ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479734.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2952 Score = 335 bits (169), Expect = 8e-89 Identities = 320/369 (86%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 123 agggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtgc 182 |||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 110 agggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactgt 169 Query: 183 cttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatgt 242 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 170 cttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatgt 229 Query: 243 atgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaaga 302 || ||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||| Sbjct: 230 gtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaaga 289 Query: 303 gcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggcttat 362 ||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||| Sbjct: 290 gcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggcttat 349 Query: 363 tgggaactggcaccaaacgaccagcaaaatatattttgtttggcaaattgaatcagtgat 422 |||||||||||| || || |||||||||||||||||| | ||||| ||||||||||| || Sbjct: 350 tgggaactggcaacagacaaccagcaaaatatattttatatggcagattgaatcagtaat 409 Query: 423 ctcagatattcagggatgctcccttca-ttgtgtcagcttgctaattctttattaccttc 481 ||||||||| |||||||| || || || |||| ||||||| ||| ||| |||||||||| Sbjct: 410 ctcagatatccagggatgttctctacagctgtgccagcttgttaactctctattaccttc 469 Query: 482 tctgactgg 490 | ||||||| Sbjct: 470 tttgactgg 478
>ref|XM_507093.1| PREDICTED Oryza sativa (japonica cultivar-group), P0007D08.34 mRNA Length = 2953 Score = 335 bits (169), Expect = 8e-89 Identities = 320/369 (86%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 123 agggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtgc 182 |||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 111 agggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactgt 170 Query: 183 cttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatgt 242 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 171 cttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatgt 230 Query: 243 atgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaaga 302 || ||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||| Sbjct: 231 gtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaaga 290 Query: 303 gcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggcttat 362 ||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||| Sbjct: 291 gcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggcttat 350 Query: 363 tgggaactggcaccaaacgaccagcaaaatatattttgtttggcaaattgaatcagtgat 422 |||||||||||| || || |||||||||||||||||| | ||||| ||||||||||| || Sbjct: 351 tgggaactggcaacagacaaccagcaaaatatattttatatggcagattgaatcagtaat 410 Query: 423 ctcagatattcagggatgctcccttca-ttgtgtcagcttgctaattctttattaccttc 481 ||||||||| |||||||| || || || |||| ||||||| ||| ||| |||||||||| Sbjct: 411 ctcagatatccagggatgttctctacagctgtgccagcttgttaactctctattaccttc 470 Query: 482 tctgactgg 490 | ||||||| Sbjct: 471 tttgactgg 479
>dbj|AK106557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-109-A01, full insert sequence Length = 2952 Score = 335 bits (169), Expect = 8e-89 Identities = 320/369 (86%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 123 agggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtgc 182 |||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 110 agggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactgt 169 Query: 183 cttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatgt 242 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 170 cttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatgt 229 Query: 243 atgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaaga 302 || ||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||| Sbjct: 230 gtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaaga 289 Query: 303 gcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggcttat 362 ||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||| Sbjct: 290 gcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggcttat 349 Query: 363 tgggaactggcaccaaacgaccagcaaaatatattttgtttggcaaattgaatcagtgat 422 |||||||||||| || || |||||||||||||||||| | ||||| ||||||||||| || Sbjct: 350 tgggaactggcaacagacaaccagcaaaatatattttatatggcagattgaatcagtaat 409 Query: 423 ctcagatattcagggatgctcccttca-ttgtgtcagcttgctaattctttattaccttc 481 ||||||||| |||||||| || || || |||| ||||||| ||| ||| |||||||||| Sbjct: 410 ctcagatatccagggatgttctctacagctgtgccagcttgttaactctctattaccttc 469 Query: 482 tctgactgg 490 | ||||||| Sbjct: 470 tttgactgg 478
>dbj|AK102080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082K05, full insert sequence Length = 2953 Score = 335 bits (169), Expect = 8e-89 Identities = 320/369 (86%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 123 agggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtgc 182 |||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 111 agggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactgt 170 Query: 183 cttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatgt 242 |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 171 cttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatgt 230 Query: 243 atgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaaga 302 || ||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||| Sbjct: 231 gtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaaga 290 Query: 303 gcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggcttat 362 ||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||| Sbjct: 291 gcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggcttat 350 Query: 363 tgggaactggcaccaaacgaccagcaaaatatattttgtttggcaaattgaatcagtgat 422 |||||||||||| || || |||||||||||||||||| | ||||| ||||||||||| || Sbjct: 351 tgggaactggcaacagacaaccagcaaaatatattttatatggcagattgaatcagtaat 410 Query: 423 ctcagatattcagggatgctcccttca-ttgtgtcagcttgctaattctttattaccttc 481 ||||||||| |||||||| || || || |||| ||||||| ||| ||| |||||||||| Sbjct: 411 ctcagatatccagggatgttctctacagctgtgccagcttgttaactctctattaccttc 470 Query: 482 tctgactgg 490 | ||||||| Sbjct: 471 tttgactgg 479
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 285 bits (144), Expect = 7e-74 Identities = 246/280 (87%) Strand = Plus / Plus Query: 122 cagggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtg 181 ||||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 546736 cagggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactg 546795 Query: 182 ccttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatg 241 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 546796 tcttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatg 546855 Query: 242 tatgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaag 301 | || ||||| |||||||| ||||||||||||||||| ||| |||| |||||||||||| Sbjct: 546856 tgtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaag 546915 Query: 302 agcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggctta 361 |||||||| ||||||||||||||||||||| || |||||| || |||||||||||||| Sbjct: 546916 agcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggctta 546975 Query: 362 ttgggaactggcaccaaacgaccagcaaaatatattttgt 401 ||||||||||||| || || |||||||||||||||||||| Sbjct: 546976 ttgggaactggcaacagacaaccagcaaaatatattttgt 547015 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 403 tggcaaattgaatcagtgatctcagatattcagggatgctcccttca-ttgtgtcagctt 461 ||||| ||||||||||| ||||||||||| |||||||| || || || |||| |||||| Sbjct: 547775 tggcagattgaatcagtaatctcagatatccagggatgttctctacagctgtgccagctt 547834 Query: 462 gctaattctttattaccttctctgactgg 490 | ||| ||| ||||||||||| ||||||| Sbjct: 547835 gttaactctctattaccttctttgactgg 547863
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 285 bits (144), Expect = 7e-74 Identities = 246/280 (87%) Strand = Plus / Plus Query: 122 cagggttgatggaagatttctcaccgagggctctgctcaatagtatctcgcaccttagtg 181 ||||| |||||||| ||||||| ||||| | |||||||||||||||| || | | || Sbjct: 136696 cagggctgatggaaaatttctccccgagaaccctgctcaatagtatcttgcgtatcactg 136755 Query: 182 ccttaacttctgatggctctactgcaaggcccaagcctattcagaagtactgccaaaatg 241 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136756 tcttaacctccgatggctctactgcaaggcccaagcccattcagaagtactgccaaaatg 136815 Query: 242 tatgcgatatatcaagcatcgtgagccctctcatagaagatatatgcaagtctcctgaag 301 | || ||||| |||||||| ||||||||||||||||| ||| |||| |||||||||||| Sbjct: 136816 tgtgtgatatctcaagcattgtgagccctctcatagaggatctatgtgagtctcctgaag 136875 Query: 302 agcaactcgatgaggtgttaagggagcttgacattgctataaatgaagcttcagggctta 361 |||||||| ||||||||||||||||||||| || |||||| || |||||||||||||| Sbjct: 136876 agcaactcaatgaggtgttaagggagcttggcactgctattaacagagcttcagggctta 136935 Query: 362 ttgggaactggcaccaaacgaccagcaaaatatattttgt 401 ||||||||||||| || || |||||||||||||||||||| Sbjct: 136936 ttgggaactggcaacagacaaccagcaaaatatattttgt 136975 Score = 65.9 bits (33), Expect = 1e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 403 tggcaaattgaatcagtgatctcagatattcagggatgctcccttca-ttgtgtcagctt 461 ||||| ||||||||||| ||||||||||| |||||||| || || || |||| |||||| Sbjct: 137735 tggcagattgaatcagtaatctcagatatccagggatgttctctacagctgtgccagctt 137794 Query: 462 gctaattctttattaccttctctgactgg 490 | ||| ||| ||||||||||| ||||||| Sbjct: 137795 gttaactctctattaccttctttgactgg 137823
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 gccagatccgccgccgtcccc 107 ||||||||||||||||||||| Sbjct: 2595001 gccagatccgccgccgtcccc 2595021
>emb|BX004889.8| Zebrafish DNA sequence from clone DKEY-65P15 in linkage group 25, complete sequence Length = 253422 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 ccaaacgaccagcaaaatatatttt 399 ||||| ||||||||||||||||||| Sbjct: 18759 ccaaaagaccagcaaaatatatttt 18783
>ref|NM_001031219.1| Gallus gallus RasGEF domain family, member 1A (RASGEF1A), mRNA Length = 3371 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tgactggatgtgcttgcatt 503 |||||||||||||||||||| Sbjct: 3311 tgactggatgtgcttgcatt 3330
>ref|XM_416232.1| PREDICTED: Gallus gallus similar to Rotavirus X associated non-structural protein (RoXaN) (LOC417994), mRNA Length = 671 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 cttctctgactggatgtgct 497 |||||||||||||||||||| Sbjct: 303 cttctctgactggatgtgct 284
>emb|Z67880.1|CEC34E7 Caenorhabditis elegans Cosmid C34E7, complete sequence Length = 27008 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 caaaatatattttgtttggcaaat 410 ||||| |||||||||||||||||| Sbjct: 8400 caaaacatattttgtttggcaaat 8423
>gb|AC121988.2| Mus musculus BAC clone RP24-295B16 from 10, complete sequence Length = 154373 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 caagcatcgtgagccctctcatag 277 |||||||| ||||||||||||||| Sbjct: 91718 caagcatcatgagccctctcatag 91695
>ref|XM_646899.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (137.t00012) partial mRNA Length = 2139 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aattctttattaccttctct 484 |||||||||||||||||||| Sbjct: 671 aattctttattaccttctct 652
>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence Length = 92099 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 aaaatatattttgtttggcaaatt 411 |||||||||||||||||| ||||| Sbjct: 79996 aaaatatattttgtttggtaaatt 79973
>emb|AL662906.4| Human DNA sequence from clone RP11-111I12 on chromosome 1 Contains a novel gene, complete sequence Length = 134028 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gcaaaatatattttgtttggcaaa 409 |||||| ||||||||||||||||| Sbjct: 52809 gcaaaacatattttgtttggcaaa 52832
>emb|AJ719758.1| Gallus gallus mRNA for hypothetical protein, clone 6c20 Length = 3371 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tgactggatgtgcttgcatt 503 |||||||||||||||||||| Sbjct: 3311 tgactggatgtgcttgcatt 3330
>emb|BX004883.18| Zebrafish DNA sequence from clone CH211-152O9, complete sequence Length = 154146 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 atctcagatattcagggatg 440 |||||||||||||||||||| Sbjct: 109813 atctcagatattcagggatg 109832
>gb|AC093499.2| Drosophila melanogaster 3L BAC RP98-18K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169209 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cagcaaaatatattttgttt 403 |||||||||||||||||||| Sbjct: 11999 cagcaaaatatattttgttt 12018
>gb|AC113250.3| Drosophila melanogaster 3L BAC RP98-6P13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168299 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cagcaaaatatattttgttt 403 |||||||||||||||||||| Sbjct: 154146 cagcaaaatatattttgttt 154165
>ref|XM_683627.1| PREDICTED: Danio rerio similar to guanylyl cyclase-2 (LOC560233), mRNA Length = 1404 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 atctcagatattcagggatg 440 |||||||||||||||||||| Sbjct: 988 atctcagatattcagggatg 1007
>emb|CR386175.1| Gallus gallus finished cDNA, clone ChEST98i15 Length = 1301 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 gtgtcagcttgctaattctttatt 475 ||||||||||||||||||| |||| Sbjct: 605 gtgtcagcttgctaattctgtatt 628
>gb|AY154775.1| Ceratitis capitata clone Ccmar2.9 mariner transposable element, complete sequence Length = 969 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccaaaatgtatgcgatatat 253 |||||||||||||||||||| Sbjct: 896 ccaaaatgtatgcgatatat 915
>gb|AE003529.3| Drosophila melanogaster chromosome 3L, section 56 of 83 of the complete sequence Length = 252201 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cagcaaaatatattttgttt 403 |||||||||||||||||||| Sbjct: 147984 cagcaaaatatattttgttt 148003 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,179,084 Number of Sequences: 3902068 Number of extensions: 4179084 Number of successful extensions: 84352 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84238 Number of HSP's gapped (non-prelim): 102 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
