ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120845.11| Mus musculus chromosome 3, clone RP23-468E4, com... 44 0.28
2gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
3emb|AL031273.1|HS726F20 Human DNA sequence from clone RP4-726F20... 42 1.1
4gb|AE005953.1| Caulobacter crescentus CB15 section 279 of 359 of... 42 1.1
5gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence 42 1.1
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
7gb|AY549187.1| Streptomyces albofaciens cytochrome P450 monooxyg... 40 4.4
8gb|AC123541.3| Oryctolagus cuniculus clone LB1-184A7, complete s... 40 4.4
9emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ... 40 4.4
10gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 4.4
11ref|XM_575580.1| PREDICTED: Rattus norvegicus similar to MGC2201... 40 4.4
12dbj|AB158476.1| Streptomyces sp. FERM BP-5809 clac gene for cycl... 40 4.4

>gb|AC120845.11| Mus musculus chromosome 3, clone RP23-468E4, complete sequence
          Length = 174129

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 216   gccactcctcccccgccccggccctc 241
             |||||||||||||||||||| |||||
Sbjct: 88037 gccactcctcccccgccccgcccctc 88062



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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
              complete sequence
          Length = 144601

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 245    ctccagctctcctccggctacttctcgggcggcgggg 281
              |||||||||  | ||||||||||||| ||||||||||
Sbjct: 108078 ctccagctcaacaccggctacttctccggcggcgggg 108042



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>emb|AL031273.1|HS726F20 Human DNA sequence from clone RP4-726F20 on chromosome 1p36.11-36.23
             Contains the 5' end of a novel gene, complete sequence
          Length = 56959

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   cgccgcccgcctcccgcgctc 321
             |||||||||||||||||||||
Sbjct: 34147 cgccgcccgcctcccgcgctc 34127



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>gb|AE005953.1| Caulobacter crescentus CB15 section 279 of 359 of the complete genome
          Length = 11527

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 291  tcggcccggacgccgcccgcctcccgcgc 319
            ||||||| |||||||||||||||| ||||
Sbjct: 9469 tcggcccagacgccgcccgcctccggcgc 9497



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>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence
          Length = 215342

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    ctcccccgccccggccctcgc 243
              |||||||||||||||||||||
Sbjct: 104663 ctcccccgccccggccctcgc 104683



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 245      ctccagctctcctccggctacttctcgggcggcgggg 281
                |||||||||  | ||||||||||||| ||||||||||
Sbjct: 27511948 ctccagctcaacaccggctacttctccggcggcgggg 27511912



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>gb|AY549187.1| Streptomyces albofaciens cytochrome P450 monooxygenase CYP107Z2v1
            (ema8) gene, complete cds
          Length = 4500

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 301  cgccgcccgcctcccgcgctccttcgcg 328
            ||||| ||||| ||||||||||||||||
Sbjct: 3129 cgccgtccgccgcccgcgctccttcgcg 3156



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>gb|AC123541.3| Oryctolagus cuniculus clone LB1-184A7, complete sequence
          Length = 190901

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tctcaattcccgctccccgc 75
             ||||||||||||||||||||
Sbjct: 91276 tctcaattcccgctccccgc 91295



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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    ggcgccggccactcctcccccgcc 232
              ||||||||||||||||||| ||||
Sbjct: 280016 ggcgccggccactcctccctcgcc 279993



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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      tctcaattcccgctccccgc 75
               ||||||||||||||||||||
Sbjct: 1790130 tctcaattcccgctccccgc 1790149



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>ref|XM_575580.1| PREDICTED: Rattus norvegicus similar to MGC22014 protein (LOC500229),
            mRNA
          Length = 7317

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  gctccagctctcctccggct 263
            ||||||||||||||||||||
Sbjct: 1210 gctccagctctcctccggct 1229



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>dbj|AB158476.1| Streptomyces sp. FERM BP-5809 clac gene for cyclic lipopeptide
            acylase small and large subunits, complete cds
          Length = 5692

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  tcttcggcccggacgccgcc 307
            ||||||||||||||||||||
Sbjct: 1231 tcttcggcccggacgccgcc 1250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,322,258
Number of Sequences: 3902068
Number of extensions: 1322258
Number of successful extensions: 44179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44073
Number of HSP's gapped (non-prelim): 106
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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