ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20b03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splic... | 246 | 2e-65 | 2 | PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splic... | 246 | 2e-65 | 3 | PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog | 234 | 7e-62 | 4 | PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8 | 210 | 2e-54 | 5 | THYG_MOUSE (O08710) Thyroglobulin precursor | 31 | 1.9 | 6 | THYG_RAT (P06882) Thyroglobulin precursor | 31 | 1.9 | 7 | V118_ASFL5 (P68745) V118 protein precursor | 30 | 2.5 | 8 | V118_ASFB7 (P68744) V118 protein precursor | 30 | 2.5 | 9 | CD248_MOUSE (Q91V98) Endosialin precursor (Tumor endothelial mar... | 29 | 7.3 | 10 | Y432_MYCPN (P75356) Hypothetical ABC transporter ATP-binding pro... | 28 | 9.6 |
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>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| Length = 2335 Score = 246 bits (629), Expect = 2e-65 Identities = 111/159 (69%), Positives = 130/159 (81%) Frame = +3 Query: 3 IPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSEPPPLLVYKWCQGINNLQDI 182 +PVY++EPLEKITDAYLDQYLWYE DKR LFP W+KPAD+EPPPLLVYKWCQGINNLQD+ Sbjct: 906 VPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDV 965 Query: 183 WDTSDGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNVVLSYKDMSHT 362 W+TS+G+C VML+++FEK +EKID DHNIADY+TAKNNVV++YKDM+HT Sbjct: 966 WETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHT 1025 Query: 363 NSYGLIRGLQFASFIVQYYXXXXXXXXXXXTRASEIAGP 479 NSYG+IRGLQFASFIVQYY RASE+AGP Sbjct: 1026 NSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGP 1064
>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)| (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) Length = 2335 Score = 246 bits (629), Expect = 2e-65 Identities = 111/159 (69%), Positives = 130/159 (81%) Frame = +3 Query: 3 IPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSEPPPLLVYKWCQGINNLQDI 182 +PVY++EPLEKITDAYLDQYLWYE DKR LFP W+KPAD+EPPPLLVYKWCQGINNLQD+ Sbjct: 906 VPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDV 965 Query: 183 WDTSDGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNVVLSYKDMSHT 362 W+TS+G+C VML+++FEK +EKID DHNIADY+TAKNNVV++YKDM+HT Sbjct: 966 WETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHT 1025 Query: 363 NSYGLIRGLQFASFIVQYYXXXXXXXXXXXTRASEIAGP 479 NSYG+IRGLQFASFIVQYY RASE+AGP Sbjct: 1026 NSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGP 1064
>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog| Length = 2329 Score = 234 bits (598), Expect = 7e-62 Identities = 105/159 (66%), Positives = 126/159 (79%) Frame = +3 Query: 3 IPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSEPPPLLVYKWCQGINNLQDI 182 IPVY+IEPLEK+TDAYLDQYLWYE DKR LFP WVKP D+EPPPLL YKWCQG+NNLQD+ Sbjct: 898 IPVYDIEPLEKVTDAYLDQYLWYEADKRRLFPAWVKPGDTEPPPLLTYKWCQGLNNLQDV 957 Query: 183 WDTSDGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNVVLSYKDMSHT 362 W+TS+G+C V+++TK EK EK+D DHNIADY+T+KNNV+++YKDM+HT Sbjct: 958 WETSEGECNVIMETKLEKIAEKMDLTLLNRLLRLIVDHNIADYMTSKNNVLINYKDMNHT 1017 Query: 363 NSYGLIRGLQFASFIVQYYXXXXXXXXXXXTRASEIAGP 479 NS+G+IRGLQFASFIVQ+Y RASEIAGP Sbjct: 1018 NSFGIIRGLQFASFIVQFYGLVLDLLVLGLRRASEIAGP 1056
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 210 bits (534), Expect = 2e-54 Identities = 98/158 (62%), Positives = 115/158 (72%) Frame = +3 Query: 6 PVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSEPPPLLVYKWCQGINNLQDIW 185 PVY ++PLEKITDAYLDQYLWYE D+R LFPNW+KP+DSE PPLLVYKW QGINNL +IW Sbjct: 980 PVYSVDPLEKITDAYLDQYLWYEADQRKLFPNWIKPSDSEIPPLLVYKWTQGINNLSEIW 1039 Query: 186 DTSDGQCVVMLQTKFEKFFEKIDXXXXXXXXXXXXDHNIADYVTAKNNVVLSYKDMSHTN 365 D S GQ V+L+T + EKID D NIADY+TAKNNVV+++KDMSH N Sbjct: 1040 DVSRGQSAVLLETTLGEMAEKIDFTLLNRLLRLIVDPNIADYITAKNNVVINFKDMSHVN 1099 Query: 366 SYGLIRGLQFASFIVQYYXXXXXXXXXXXTRASEIAGP 479 YGLIRGL+FASFI QYY RA+++AGP Sbjct: 1100 KYGLIRGLKFASFIFQYYGLVIDLLLLGQERATDLAGP 1137
>THYG_MOUSE (O08710) Thyroglobulin precursor| Length = 2766 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/67 (26%), Positives = 26/67 (38%) Frame = -1 Query: 235 FSNFVCSITTHCPSLVSHMSCKLFIPWHHL*TSRGGGSESAGFTQFGKRWRLSPSYHKYW 56 FSNF+ S + P S + + PW GG S Q R L + +W Sbjct: 2658 FSNFIRSGNPNYPHEFSRKAAEFATPWPDFIPGAGGESYKELSAQLPNRQGLKQADCSFW 2717 Query: 55 SRYASVI 35 S+Y + Sbjct: 2718 SKYIQTL 2724
>THYG_RAT (P06882) Thyroglobulin precursor| Length = 2768 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/67 (26%), Positives = 26/67 (38%) Frame = -1 Query: 235 FSNFVCSITTHCPSLVSHMSCKLFIPWHHL*TSRGGGSESAGFTQFGKRWRLSPSYHKYW 56 FSNF+ S + P S + + PW GG S Q R L + +W Sbjct: 2660 FSNFIRSGNPNYPHEFSQKAAEFATPWPDFVPGAGGESYKELSAQLPNRQGLKKADCSFW 2719 Query: 55 SRYASVI 35 S+Y + Sbjct: 2720 SKYIQTL 2726
>V118_ASFL5 (P68745) V118 protein precursor| Length = 118 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 105 VKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCV 209 ++P + P L Y WC + + Q WD DG C+ Sbjct: 24 LRPTEDPPEEELEY-WCAYMESCQFCWDCQDGTCI 57
>V118_ASFB7 (P68744) V118 protein precursor| Length = 118 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 105 VKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCV 209 ++P + P L Y WC + + Q WD DG C+ Sbjct: 24 LRPTEDPPEEELEY-WCAYMESCQFCWDCQDGTCI 57
>CD248_MOUSE (Q91V98) Endosialin precursor (Tumor endothelial marker 1) (CD248| antigen) Length = 765 Score = 28.9 bits (63), Expect = 7.3 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 60 YLWYEGDKRHLFPNWVKPADSEPPP 134 ++W GD+ F NW +PA P P Sbjct: 103 FIWTTGDQDTAFTNWAQPATEGPCP 127
>Y432_MYCPN (P75356) Hypothetical ABC transporter ATP-binding protein MG303| homolog (A05_orf382) Length = 353 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/68 (23%), Positives = 30/68 (44%) Frame = -3 Query: 377 KPIRICVTHILVRQHNIILCSDIISNVMVQDQP*KPVQQSQINFFKELLKFCLQHHNTLP 198 K + + ++L + LC ++ V+ Q+ +NF K+ L+ C HH +P Sbjct: 149 KQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKYLEMCGLHH--IP 206 Query: 197 IASVPYVL 174 + P L Sbjct: 207 LIKNPLEL 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,178,531 Number of Sequences: 219361 Number of extensions: 1428275 Number of successful extensions: 3951 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3951 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
