ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20b03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550362.1| Oryza sativa (japonica cultivar-group), mRNA Length = 7053 Score = 607 bits (306), Expect = e-170 Identities = 435/478 (91%) Strand = Plus / Plus Query: 1 tgatcccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaat 60 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 2756 tgatcccagtatatgaaattgagcctcttgagaaaatcactgatgcctaccttgaccagt 2815 Query: 61 acttgtggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgatt 120 ||||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct: 2816 acttgtggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgatt 2875 Query: 121 cagaaccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggaca 180 |||||||||||||| | ||||||||||| ||||||||||||||||||||| | ||||| Sbjct: 2876 cagaaccacctcctttgcttgtttacaaatggtgccaaggtataaataatctacaggatg 2935 Query: 181 tatgggacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 240 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2936 tatgggacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 2995 Query: 241 ttgaaaaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataaca 300 | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | Sbjct: 2996 tcgaaaaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccataata 3055 Query: 301 ttgctgattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcaca 360 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | Sbjct: 3056 ttgctgattatgtcactgcaaagaacaatgttgtgttgtcttacaaggatatgagtcata 3115 Query: 361 caaattcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatg 420 | ||||||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||| Sbjct: 3116 ctaattcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatg 3175 Query: 421 ggctggtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 | || |||||||||||||| || || ||||||||||| || |||||||| || ||||| Sbjct: 3176 gtcttgtgctggatctccttctgctcggtttaacacgtgcaagtgagatcgctgggcc 3233
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 607 bits (306), Expect = e-170 Identities = 435/478 (91%) Strand = Plus / Minus Query: 1 tgatcccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaat 60 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 3368157 tgatcccagtatatgaaattgagcctcttgagaaaatcactgatgcctaccttgaccagt 3368098 Query: 61 acttgtggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgatt 120 ||||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct: 3368097 acttgtggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgatt 3368038 Query: 121 cagaaccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggaca 180 |||||||||||||| | ||||||||||| ||||||||||||||||||||| | ||||| Sbjct: 3368037 cagaaccacctcctttgcttgtttacaaatggtgccaaggtataaataatctacaggatg 3367978 Query: 181 tatgggacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 240 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3367977 tatgggacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 3367918 Query: 241 ttgaaaaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataaca 300 | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | Sbjct: 3367917 tcgaaaaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccataata 3367858 Query: 301 ttgctgattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcaca 360 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | Sbjct: 3367857 ttgctgattatgtcactgcaaagaacaatgttgtgttgtcttacaaggatatgagtcata 3367798 Query: 361 caaattcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatg 420 | ||||||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||| Sbjct: 3367797 ctaattcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatg 3367738 Query: 421 ggctggtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 | || |||||||||||||| || || ||||||||||| || |||||||| || ||||| Sbjct: 3367737 gtcttgtgctggatctccttctgctcggtttaacacgtgcaagtgagatcgctgggcc 3367680
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 607 bits (306), Expect = e-170 Identities = 435/478 (91%) Strand = Plus / Minus Query: 1 tgatcccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaat 60 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 59711 tgatcccagtatatgaaattgagcctcttgagaaaatcactgatgcctaccttgaccagt 59652 Query: 61 acttgtggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgatt 120 ||||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct: 59651 acttgtggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgatt 59592 Query: 121 cagaaccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggaca 180 |||||||||||||| | ||||||||||| ||||||||||||||||||||| | ||||| Sbjct: 59591 cagaaccacctcctttgcttgtttacaaatggtgccaaggtataaataatctacaggatg 59532 Query: 181 tatgggacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 240 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59531 tatgggacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 59472 Query: 241 ttgaaaaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataaca 300 | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | Sbjct: 59471 tcgaaaaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccataata 59412 Query: 301 ttgctgattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcaca 360 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | Sbjct: 59411 ttgctgattatgtcactgcaaagaacaatgttgtgttgtcttacaaggatatgagtcata 59352 Query: 361 caaattcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatg 420 | ||||||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||| Sbjct: 59351 ctaattcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatg 59292 Query: 421 ggctggtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 | || |||||||||||||| || || ||||||||||| || |||||||| || ||||| Sbjct: 59291 gtcttgtgctggatctccttctgctcggtttaacacgtgcaagtgagatcgctgggcc 59234
>ref|XM_475644.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 7053 Score = 581 bits (293), Expect = e-163 Identities = 428/473 (90%) Strand = Plus / Plus Query: 6 ccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttg 65 |||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| Sbjct: 2761 ccggtatatgaaattgagcctcttgagaaaatcaccgatgcttaccttgaccagtacttg 2820 Query: 66 tggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaa 125 |||||||| |||||||| || ||||| ||||| || ||||| |||||||||||||||||| Sbjct: 2821 tggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgattcagaa 2880 Query: 126 ccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgg 185 ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||| ||||| Sbjct: 2881 ccacctcctctgcttgtttacaaatggtgccaaggtataaataatctacaggatgtatgg 2940 Query: 186 gacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaa 245 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 2941 gacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgaaaagttcttcgaa 3000 Query: 246 aaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataacattgct 305 |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 3001 aaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccacaatattgct 3060 Query: 306 gattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaat 365 |||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||| Sbjct: 3061 gattatgtcactgcaaagaacaatgttgtattatcttacaaggatatgagtcatactaat 3120 Query: 366 tcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatgggctg 425 |||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||||||| Sbjct: 3121 tcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatgggctt 3180 Query: 426 gtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 |||||||||||||| || || ||||||||||| || || |||||||| ||||| Sbjct: 3181 gtgctggatctccttctgctcggtttaacacgtgcaagcgagattgcggggcc 3233
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 581 bits (293), Expect = e-163 Identities = 428/473 (90%) Strand = Plus / Minus Query: 6 ccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttg 65 |||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| Sbjct: 71638 ccggtatatgaaattgagcctcttgagaaaatcaccgatgcttaccttgaccagtacttg 71579 Query: 66 tggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaa 125 |||||||| |||||||| || ||||| ||||| || ||||| |||||||||||||||||| Sbjct: 71578 tggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgattcagaa 71519 Query: 126 ccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgg 185 ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||| ||||| Sbjct: 71518 ccacctcctctgcttgtttacaaatggtgccaaggtataaataatctacaggatgtatgg 71459 Query: 186 gacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaa 245 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 71458 gacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgaaaagttcttcgaa 71399 Query: 246 aaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataacattgct 305 |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 71398 aaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccacaatattgct 71339 Query: 306 gattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaat 365 |||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||| Sbjct: 71338 gattatgtcactgcaaagaacaatgttgtattatcttacaaggatatgagtcatactaat 71279 Query: 366 tcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatgggctg 425 |||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||||||| Sbjct: 71278 tcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatgggctt 71219 Query: 426 gtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 |||||||||||||| || || ||||||||||| || || |||||||| ||||| Sbjct: 71218 gtgctggatctccttctgctcggtttaacacgtgcaagcgagattgcggggcc 71166
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 581 bits (293), Expect = e-163 Identities = 428/473 (90%) Strand = Plus / Minus Query: 6 ccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttg 65 |||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| Sbjct: 3649291 ccggtatatgaaattgagcctcttgagaaaatcaccgatgcttaccttgaccagtacttg 3649232 Query: 66 tggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaa 125 |||||||| |||||||| || ||||| ||||| || ||||| |||||||||||||||||| Sbjct: 3649231 tggtatgagggggacaagcgacacctattcccgaactgggtcaagcctgctgattcagaa 3649172 Query: 126 ccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgg 185 ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||| ||||| Sbjct: 3649171 ccacctcctctgcttgtttacaaatggtgccaaggtataaataatctacaggatgtatgg 3649112 Query: 186 gacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaa 245 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 3649111 gacactagtgacgggcagtgtgttgtgatgctgcagacaaaatttgaaaagttcttcgaa 3649052 Query: 246 aaaattgatctgactctgttgaacaggcttctacggttggtcttggaccataacattgct 305 |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||| Sbjct: 3649051 aaaattgatctgacactgttgaacaggcttctgcggttggtcttggaccacaatattgct 3648992 Query: 306 gattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaat 365 |||||||||||||||||||| |||||||| | |||||||||||||||||||| || ||| Sbjct: 3648991 gattatgtcactgcaaagaacaatgttgtattatcttacaaggatatgagtcatactaat 3648932 Query: 366 tcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactatgggctg 425 |||||||| || ||||||||||| ||||||||||| ||| ||||||| ||||||||||| Sbjct: 3648931 tcttatggtctcattcggggtctacagtttgcatcatttgttgtgcaatactatgggctt 3648872 Query: 426 gtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 |||||||||||||| || || ||||||||||| || || |||||||| ||||| Sbjct: 3648871 gtgctggatctccttctgctcggtttaacacgtgcaagcgagattgcggggcc 3648819
>ref|NM_106656.2| Arabidopsis thaliana SUS2 (ABNORMAL SUSPENSOR 2) AT1G80070 (SUS2) mRNA, complete cds Length = 7386 Score = 244 bits (123), Expect = 2e-61 Identities = 381/467 (81%) Strand = Plus / Plus Query: 12 tatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtat 71 |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct: 2863 tatgaaatagagcctctagagaaaattaccgatgcatatcttgatcaatacttgtggtac 2922 Query: 72 gaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacct 131 ||||| ||||| || ||| | || ||||| ||| | ||||| || || ||||| || || Sbjct: 2923 gaaggtgacaagcgtcacttgtttccaaactggattaagccagcagactcagagccgccc 2982 Query: 132 cctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacact 191 || || || ||||| || ||||| |||||||| || |||||||| | |||||||||||| Sbjct: 2983 ccacttctggtttataaatggtgtcaaggtatcaacaatttgcaaggcatatgggacaca 3042 Query: 192 agcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaatt 251 | |||||||||||||| |||||||| || || || || || ||||||||||| ||||| Sbjct: 3043 ggtgatgggcagtgtgtggtgatgctccaaactaagttcgaaaagttctttgagaaaatc 3102 Query: 252 gatctgactctgttgaacaggcttctacggttggtcttggaccataacattgctgattat 311 ||| |||| |||||||||||||||| || ||||| | ||||| || ||||| || ||| Sbjct: 3103 gatttgacaatgttgaacaggcttcttcgtttggttcttgaccacaatattgcagactat 3162 Query: 312 gtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttat 371 || | || ||||||||||| || ||||||||||||||||||||||| || || || ||| Sbjct: 3163 gtgtccgccaagaataatgtggtcctgtcttacaaggatatgagtcatactaactcgtat 3222 Query: 372 gggcttattcggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctg 431 || || ||| |||| |||||||||||||| ||| |||| |||| ||||| || |||| Sbjct: 3223 ggtctcattaggggacttcagtttgcatcgtttgttgttcagttttatggactattgctt 3282 Query: 432 gatctcctacttcttggtttaacacgagctagtgagattgcagggcc 478 ||||| | ||||||||||| || ||||| ||||| ||||| ||||| Sbjct: 3283 gatcttttgcttcttggtttgactcgagcgagtgaaattgctgggcc 3329
>gb|AC153129.20| Medicago truncatula clone mth2-103o2, complete sequence Length = 111951 Score = 242 bits (122), Expect = 9e-61 Identities = 394/482 (81%), Gaps = 2/482 (0%) Strand = Plus / Minus Query: 1 tgatcccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaat 60 |||| ||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||| Sbjct: 82591 tgattccggtttacgaaatagagcctctggagaaaattacagatgcatatcttgatcaat 82532 Query: 61 acttgtggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgatt 120 | |||||||||||||||||||||| || || || || || ||| | ||||| || |||| Sbjct: 82531 atctgtggtatgaaggggacaaacgtcatctatttcctaactggatcaagccagcagatt 82472 Query: 121 cagaaccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggaca 180 |||| ||||| ||||| | |||||||| ||||| |||||||||||||||||| | | || Sbjct: 82471 cagagccaccacctcttttagtttacaaatggtgtcaaggtataaataatttggaaggca 82412 Query: 181 tatgggacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttct 240 | |||||||| || ||||| || || ||||||||| ||||||| |||||||||||||| | Sbjct: 82411 tctgggacaccagtgatggtcactgcgttgtgatgttgcagaccaaatttgagaagtttt 82352 Query: 241 ttgaaaaaattgatctgact-ctgttgaacaggcttctacggttggtcttggaccataac 299 | || || |||||| | ||| |||| || |||||||| || ||||| | ||||| ||| Sbjct: 82351 tcgagaagattgatat-actaatgttaaataggcttctccgtttggttctagaccacaac 82293 Query: 300 attgctgattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcac 359 |||||||||||| |||||||||| || ||||||||| |||| |||||||||||||| ||| Sbjct: 82292 attgctgattatatcactgcaaaaaacaatgttgtgttgtcatacaaggatatgagccac 82233 Query: 360 acaaattcttatgggcttattcggggtcttcagtttgcatcttttattgtgcagtactat 419 || ||| ||||| ||||| || || || |||||||| || ||| ||| ||||| ||| Sbjct: 82232 acgaataaatatggtcttatacgtggactacagtttgcctcctttgttgctcagtattat 82173 Query: 420 gggctggtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggccg 479 || ||| | |||||||| | |||||||| || || ||||| || |||||||| || ||| Sbjct: 82172 ggcctgatattggatctcttgcttcttggattgactcgagcgagagagattgctggtccg 82113 Query: 480 cc 481 || Sbjct: 82112 cc 82111
>ref|NM_120038.3| Arabidopsis thaliana unknown protein AT4G38780 mRNA, complete cds Length = 7060 Score = 180 bits (91), Expect = 3e-42 Identities = 370/463 (79%) Strand = Plus / Plus Query: 16 aaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||| || || ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct: 2723 aaattgatcccctggagaaaattactgatgcttatcttgatcagtatttgtggtatgagg 2782 Query: 76 gggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctc 135 | ||||| |||||| | || || |||||| | |||||||| || ||||| || || || | Sbjct: 2783 gtgacaagcgccacttgtttcccaattggattaagcctgcagactcagagccgccaccgc 2842 Query: 136 tacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacactagcg 195 | || |||||||| ||||| |||||||| ||||||||||| | ||||||||||||||| | Sbjct: 2843 tcctggtttacaaatggtgtcaaggtatcaataatttgcaaggcatatgggacactagtg 2902 Query: 196 atgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaattgatc 255 |||| |||||||| |||||||| ||||| || ||||| || ||||||| || |||||| Sbjct: 2903 atggtcagtgtgtagtgatgctccagacgaagtttgaaaaactctttgagaagattgatt 2962 Query: 256 tgactctgttgaacaggcttctacggttggtcttggaccataacattgctgattatgtca 315 |||| |||||||||| ||||| || ||||| | || | || |||| | ||||| | Sbjct: 2963 tgacagtgttgaacagccttcttcgtttggttcttgatcccaagcttgcaaactatgtga 3022 Query: 316 ctgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttatgggc 375 ||| |||||||| || ||||||||||||||||||||||| | || ||| | ||||| | Sbjct: 3023 ctggcaagaataacgtggtgctgtcttacaaggatatgagctatactaatacgtatggac 3082 Query: 376 ttattcggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctggatc 435 | ||| |||| || ||||| ||||| ||| |||| |||| ||||| || ||| | |||| Sbjct: 3083 tcattaggggactgcagttcgcatcgtttgttgttcagttttatggactagtgttagatc 3142 Query: 436 tcctacttcttggtttaacacgagctagtgagattgcagggcc 478 | | || |||||||| || ||||| ||||| ||||| ||||| Sbjct: 3143 ttttgctccttggtttgactcgagcaagtgaaattgccgggcc 3185
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 161 bits (81), Expect = 3e-36 Identities = 213/257 (82%) Strand = Plus / Minus Query: 16 aaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||| || || ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct: 21531 aaattgatcccctggagaaaattactgatgcttatcttgatcagtatttgtggtatgagg 21472 Query: 76 gggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctc 135 | ||||| |||||| | || || |||||| | |||||||| || ||||| || || || | Sbjct: 21471 gtgacaagcgccacttgtttcccaattggattaagcctgcagactcagagccgccaccgc 21412 Query: 136 tacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacactagcg 195 | || |||||||| ||||| |||||||| ||||||||||| | ||||||||||||||| | Sbjct: 21411 tcctggtttacaaatggtgtcaaggtatcaataatttgcaaggcatatgggacactagtg 21352 Query: 196 atgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaattgatc 255 |||| |||||||| |||||||| ||||| || ||||| || ||||||| || |||||| Sbjct: 21351 atggtcagtgtgtagtgatgctccagacgaagtttgaaaaactctttgagaagattgatt 21292 Query: 256 tgactctgttgaacagg 272 |||| ||||||||||| Sbjct: 21291 tgacagtgttgaacagg 21275 Score = 60.0 bits (30), Expect = 7e-06 Identities = 126/158 (79%) Strand = Plus / Minus Query: 321 aagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttatgggcttatt 380 |||||||| || ||||||||||||||||||||||| | || ||| | ||||| || ||| Sbjct: 21140 aagaataacgtggtgctgtcttacaaggatatgagctatactaatacgtatggactcatt 21081 Query: 381 cggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctggatctccta 440 |||| || ||||| ||||| ||| |||| |||| ||||| || ||| | ||||| | Sbjct: 21080 aggggactgcagttcgcatcgtttgttgttcagttttatggactagtgttagatcttttg 21021 Query: 441 cttcttggtttaacacgagctagtgagattgcagggcc 478 || |||||||| || ||||| ||||| ||||| ||||| Sbjct: 21020 ctccttggtttgactcgagcaagtgaaattgccgggcc 20983
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 161 bits (81), Expect = 3e-36 Identities = 213/257 (82%) Strand = Plus / Minus Query: 16 aaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||| || || ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct: 53946 aaattgatcccctggagaaaattactgatgcttatcttgatcagtatttgtggtatgagg 53887 Query: 76 gggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctc 135 | ||||| |||||| | || || |||||| | |||||||| || ||||| || || || | Sbjct: 53886 gtgacaagcgccacttgtttcccaattggattaagcctgcagactcagagccgccaccgc 53827 Query: 136 tacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacactagcg 195 | || |||||||| ||||| |||||||| ||||||||||| | ||||||||||||||| | Sbjct: 53826 tcctggtttacaaatggtgtcaaggtatcaataatttgcaaggcatatgggacactagtg 53767 Query: 196 atgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaattgatc 255 |||| |||||||| |||||||| ||||| || ||||| || ||||||| || |||||| Sbjct: 53766 atggtcagtgtgtagtgatgctccagacgaagtttgaaaaactctttgagaagattgatt 53707 Query: 256 tgactctgttgaacagg 272 |||| ||||||||||| Sbjct: 53706 tgacagtgttgaacagg 53690 Score = 60.0 bits (30), Expect = 7e-06 Identities = 126/158 (79%) Strand = Plus / Minus Query: 321 aagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttatgggcttatt 380 |||||||| || ||||||||||||||||||||||| | || ||| | ||||| || ||| Sbjct: 53555 aagaataacgtggtgctgtcttacaaggatatgagctatactaatacgtatggactcatt 53496 Query: 381 cggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctggatctccta 440 |||| || ||||| ||||| ||| |||| |||| ||||| || ||| | ||||| | Sbjct: 53495 aggggactgcagttcgcatcgtttgttgttcagttttatggactagtgttagatcttttg 53436 Query: 441 cttcttggtttaacacgagctagtgagattgcagggcc 478 || |||||||| || ||||| ||||| ||||| ||||| Sbjct: 53435 ctccttggtttgactcgagcaagtgaaattgccgggcc 53398
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 161 bits (81), Expect = 3e-36 Identities = 213/257 (82%) Strand = Plus / Plus Query: 16 aaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||| || || ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct: 26958 aaattgatcccctggagaaaattactgatgcttatcttgatcagtatttgtggtatgagg 27017 Query: 76 gggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctc 135 | ||||| |||||| | || || |||||| | |||||||| || ||||| || || || | Sbjct: 27018 gtgacaagcgccacttgtttcccaattggattaagcctgcagactcagagccgccaccgc 27077 Query: 136 tacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacactagcg 195 | || |||||||| ||||| |||||||| ||||||||||| | ||||||||||||||| | Sbjct: 27078 tcctggtttacaaatggtgtcaaggtatcaataatttgcaaggcatatgggacactagtg 27137 Query: 196 atgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaattgatc 255 |||| |||||||| |||||||| ||||| || ||||| || ||||||| || |||||| Sbjct: 27138 atggtcagtgtgtagtgatgctccagacgaagtttgaaaaactctttgagaagattgatt 27197 Query: 256 tgactctgttgaacagg 272 |||| ||||||||||| Sbjct: 27198 tgacagtgttgaacagg 27214 Score = 60.0 bits (30), Expect = 7e-06 Identities = 126/158 (79%) Strand = Plus / Plus Query: 321 aagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttatgggcttatt 380 |||||||| || ||||||||||||||||||||||| | || ||| | ||||| || ||| Sbjct: 27349 aagaataacgtggtgctgtcttacaaggatatgagctatactaatacgtatggactcatt 27408 Query: 381 cggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctggatctccta 440 |||| || ||||| ||||| ||| |||| |||| ||||| || ||| | ||||| | Sbjct: 27409 aggggactgcagttcgcatcgtttgttgttcagttttatggactagtgttagatcttttg 27468 Query: 441 cttcttggtttaacacgagctagtgagattgcagggcc 478 || |||||||| || ||||| ||||| ||||| ||||| Sbjct: 27469 ctccttggtttgactcgagcaagtgaaattgccgggcc 27506
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence Length = 116905 Score = 153 bits (77), Expect = 6e-34 Identities = 215/261 (82%) Strand = Plus / Plus Query: 12 tatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtat 71 |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct: 58362 tatgaaatagagcctctagagaaaattaccgatgcatatcttgatcaatacttgtggtac 58421 Query: 72 gaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacct 131 ||||| ||||| || ||| | || ||||| ||| | ||||| || || ||||| || || Sbjct: 58422 gaaggtgacaagcgtcacttgtttccaaactggattaagccagcagactcagagccgccc 58481 Query: 132 cctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgggacact 191 || || || ||||| || ||||| |||||||| || |||||||| | |||||||||||| Sbjct: 58482 ccacttctggtttataaatggtgtcaaggtatcaacaatttgcaaggcatatgggacaca 58541 Query: 192 agcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaaaaaatt 251 | |||||||||||||| |||||||| || || || || || ||||||||||| ||||| Sbjct: 58542 ggtgatgggcagtgtgtggtgatgctccaaactaagttcgaaaagttctttgagaaaatc 58601 Query: 252 gatctgactctgttgaacagg 272 ||| |||| ||||||||||| Sbjct: 58602 gatttgacaatgttgaacagg 58622 Score = 99.6 bits (50), Expect = 8e-18 Identities = 131/158 (82%) Strand = Plus / Plus Query: 321 aagaataatgttgtgctgtcttacaaggatatgagtcacacaaattcttatgggcttatt 380 ||||||||||| || ||||||||||||||||||||||| || || || ||||| || ||| Sbjct: 58756 aagaataatgtggtcctgtcttacaaggatatgagtcatactaactcgtatggtctcatt 58815 Query: 381 cggggtcttcagtttgcatcttttattgtgcagtactatgggctggtgctggatctccta 440 |||| |||||||||||||| ||| |||| |||| ||||| || |||| ||||| | Sbjct: 58816 aggggacttcagtttgcatcgtttgttgttcagttttatggactattgcttgatcttttg 58875 Query: 441 cttcttggtttaacacgagctagtgagattgcagggcc 478 ||||||||||| || ||||| ||||| ||||| ||||| Sbjct: 58876 cttcttggtttgactcgagcgagtgaaattgctgggcc 58913
>ref|NM_006445.3| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8), mRNA Length = 7311 Score = 101 bits (51), Expect = 2e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 2836 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 2895 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 2896 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 2955 Query: 129 cctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggac 179 ||||| || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 2956 cctccgctgcttgtttacaagtggtgtcaaggcatcaataacctgcaggac 3006
>ref|XM_863390.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 16 (LOC480651), mRNA Length = 7275 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2824 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2883 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2884 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2943 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2944 gtttacaagtggtgccaaggcatcaataatctgca 2978
>ref|XM_863387.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 15 (LOC480651), mRNA Length = 7293 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2842 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2901 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2902 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2961 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2962 gtttacaagtggtgccaaggcatcaataatctgca 2996
>ref|XM_863384.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 14 (LOC480651), mRNA Length = 7320 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2869 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2928 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2929 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2988 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2989 gtttacaagtggtgccaaggcatcaataatctgca 3023
>ref|XM_863379.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 13 (LOC480651), mRNA Length = 7365 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2914 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2973 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2974 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 3033 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 3034 gtttacaagtggtgccaaggcatcaataatctgca 3068
>ref|XM_537770.2| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 1 (LOC480651), mRNA Length = 7329 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2878 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2937 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2938 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2997 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2998 gtttacaagtggtgccaaggcatcaataatctgca 3032
>ref|XM_863374.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 12 (LOC480651), mRNA Length = 7281 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_863371.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 11 (LOC480651), mRNA Length = 7284 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2833 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2892 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2893 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2952 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2953 gtttacaagtggtgccaaggcatcaataatctgca 2987
>ref|XM_863367.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 10 (LOC480651), mRNA Length = 7260 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2809 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2868 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2869 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2928 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2929 gtttacaagtggtgccaaggcatcaataatctgca 2963
>ref|XM_863362.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 9 (LOC480651), mRNA Length = 7287 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2836 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2895 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2896 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2955 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2956 gtttacaagtggtgccaaggcatcaataatctgca 2990
>ref|XM_863358.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 8 (LOC480651), mRNA Length = 6884 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_863355.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 7 (LOC480651), mRNA Length = 6153 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_863352.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 6 (LOC480651), mRNA Length = 6429 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_863350.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 5 (LOC480651), mRNA Length = 4774 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_863345.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 3 (LOC480651), mRNA Length = 6993 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>ref|XM_849291.1| PREDICTED: Canis familiaris similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 2 (LOC480651), mRNA Length = 7281 Score = 101 bits (51), Expect = 2e-18 Identities = 129/155 (83%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| | |||||||||| ||| Sbjct: 2830 gagccactggagaagatcactgatgcctacctggaccagtacctttggtatgaagctgac 2889 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2890 aagcgccgccttttcccaccctggatcaagcctgccgacacagaaccacctcctctgctt 2949 Query: 141 gtttacaagtggtgccaaggtataaataatttgca 175 |||||||||||||||||||| || |||||| |||| Sbjct: 2950 gtttacaagtggtgccaaggcatcaataatctgca 2984
>gb|BC064370.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae), mRNA (cDNA clone MGC:74762 IMAGE:5587081), complete cds Length = 7276 Score = 101 bits (51), Expect = 2e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 2801 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 2860 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 2861 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 2920 Query: 129 cctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggac 179 ||||| || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 2921 cctccgctgcttgtttacaagtggtgtcaaggcatcaataacctgcaggac 2971
>gb|AF092565.1|AF092565 Homo sapiens splicing factor Prp8 mRNA, complete cds Length = 7239 Score = 101 bits (51), Expect = 2e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 2760 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 2819 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 2820 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 2879 Query: 129 cctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggac 179 ||||| || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 2880 cctccactgcttgtttacaagtggtgtcaaggcatcaataacctgcaggac 2930
>emb|BX649099.1|HSM809250 Homo sapiens mRNA; cDNA DKFZp686L08123 (from clone DKFZp686L08123) Length = 11647 Score = 101 bits (51), Expect = 2e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 7165 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 7224 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 7225 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 7284 Query: 129 cctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggac 179 ||||| || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 7285 cctccgctgcttgtttacaagtggtgtcaaggcatcaataacctgcaggac 7335
>dbj|AB007510.1| Homo sapiens mRNA for PRP8 protein, complete cds Length = 7221 Score = 101 bits (51), Expect = 2e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 2763 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 2822 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 2823 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 2882 Query: 129 cctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggac 179 ||||| || ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 2883 cctccactgcttgtttacaagtggtgtcaaggcatcaataacctgcaggac 2933
>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence Length = 217253 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Minus Query: 9 gtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttgtgg 68 |||||||| ||||||| || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 125284 gtatatgatgttgagcccctggagaagataactgatgcttacctggaccagtacctgtgg 125225 Query: 69 tatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaacca 128 ||||||| ||||| |||| ||| |||||| ||| | |||||||| || |||||||| Sbjct: 125224 tatgaagccgacaagcgccgcctgttcccaccctggattaagcctgcagacacagaacca 125165 Query: 129 cctcctctacttgtttacaagtggtgccaaggta 162 ||||| || ||||||||||||||||| ||||||| Sbjct: 125164 cctccgctgcttgtttacaagtggtgtcaaggta 125131
>ref|XM_883184.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 5 (LOC507371), mRNA Length = 7263 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2836 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2895 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2896 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2955 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2956 gtttacaaatggtgccaaggcatcaataacctgcagga 2993
>ref|XM_883183.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 4 (LOC507371), mRNA Length = 7286 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2842 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2901 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2902 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2961 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2962 gtttacaaatggtgccaaggcatcaataacctgcagga 2999
>ref|XM_883182.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 3 (LOC507371), mRNA Length = 7290 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2839 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2898 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2899 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2958 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2959 gtttacaaatggtgccaaggcatcaataacctgcagga 2996
>ref|XM_870142.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 2 (LOC507371), mRNA Length = 7284 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2836 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2895 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2896 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2955 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2956 gtttacaaatggtgccaaggcatcaataacctgcagga 2993
>ref|XM_883214.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 14 (LOC507371), mRNA Length = 7211 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2763 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2822 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2823 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2882 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2883 gtttacaaatggtgccaaggcatcaataacctgcagga 2920
>ref|XM_883212.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 13 (LOC507371), mRNA Length = 7287 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2839 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2898 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2899 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2958 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2959 gtttacaaatggtgccaaggcatcaataacctgcagga 2996
>ref|XM_883211.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 12 (LOC507371), mRNA Length = 7305 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2857 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2916 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2917 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2976 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2977 gtttacaaatggtgccaaggcatcaataacctgcagga 3014
>ref|XM_883208.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 11 (LOC507371), mRNA Length = 7302 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2854 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2913 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2914 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2973 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2974 gtttacaaatggtgccaaggcatcaataacctgcagga 3011
>ref|XM_883204.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 10 (LOC507371), mRNA Length = 7341 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2893 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2952 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2953 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 3012 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 3013 gtttacaaatggtgccaaggcatcaataacctgcagga 3050
>ref|XM_883203.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 9 (LOC507371), mRNA Length = 7362 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2914 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2973 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2974 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 3033 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 3034 gtttacaaatggtgccaaggcatcaataacctgcagga 3071
>ref|XM_883199.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 8 (LOC507371), mRNA Length = 7266 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2818 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2877 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2878 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2937 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2938 gtttacaaatggtgccaaggcatcaataacctgcagga 2975
>ref|XM_883195.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 7 (LOC507371), mRNA Length = 7195 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2747 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2806 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2807 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2866 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2867 gtttacaaatggtgccaaggcatcaataacctgcagga 2904
>ref|XM_883190.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 6 (LOC507371), mRNA Length = 7302 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2854 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2913 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2914 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2973 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2974 gtttacaaatggtgccaaggcatcaataacctgcagga 3011
>ref|XM_583965.2| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220), transcript variant 1 (LOC507371), mRNA Length = 7104 Score = 91.7 bits (46), Expect = 2e-15 Identities = 130/158 (82%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggac 80 ||||| || ||||| || |||||||| ||||| ||||| ||| ||||||| |||| ||| Sbjct: 2836 gagccactggagaagatcactgatgcctacctggaccagtacctgtggtacgaagctgac 2895 Query: 81 aaacgccacctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctactt 140 || |||| ||| |||||| ||| | |||||||| || |||||||||||||||| ||| Sbjct: 2896 aagcgccgcctgttcccaccctggatcaagcctgcagacacagaaccacctcctctgctt 2955 Query: 141 gtttacaagtggtgccaaggtataaataatttgcagga 178 |||||||| ||||||||||| || ||||| ||||||| Sbjct: 2956 gtttacaaatggtgccaaggcatcaataacctgcagga 2993
>emb|AL591496.13| Mouse DNA sequence from clone RP23-384C18 on chromosome 11 Contains the 3' end of a novel gene, five novel genes, the Serpinf1 and Serpinf2 genes for serine (or cysteine) proteinase inhibitor, clade F) members 1 and 2, an H+ transporting mitochondrial F0 complex ATP synthase subunit c (subunit 9) isoform 1 (Atp5g1) pseudogene, the Prpf8 gene for pre-mRNA processing factor 8, the gene for the ortholog of human scavenger receptor class F member 1 SCARF1, the 5' end of the gene for novel protein similar to solute carrier family 43 member 1 Slc43a1 and seven CpG islands, complete sequence Length = 205633 Score = 89.7 bits (45), Expect = 8e-15 Identities = 111/133 (83%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 139739 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 139798 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || |||||| ||| | ||||||||||| |||| |||||||| || |||||||||||| Sbjct: 139799 cttttcccaccctggatcaagcctgctgacacagagccacctccactgcttgtttacaag 139858 Query: 150 tggtgccaaggta 162 ||||| ||||||| Sbjct: 139859 tggtgtcaaggta 139871
>gb|AC002121.1| Genomic sequence from Mouse 11, complete sequence Length = 84056 Score = 89.7 bits (45), Expect = 8e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 60811 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 60752 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || |||||| ||| | ||||||||||| |||| |||||||| || |||||||||||| Sbjct: 60751 cttttcccaccctggatcaagcctgctgacacagagccacctccactgcttgtttacaag 60692 Query: 150 tggtgccaaggta 162 ||||| ||||||| Sbjct: 60691 tggtgtcaaggta 60679
>ref|NM_138659.1| Mus musculus pre-mRNA processing factor 8 (Prpf8), mRNA Length = 7143 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 2784 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 2843 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || |||||| ||| | ||||||||||| |||| |||||||| || |||||||||||| Sbjct: 2844 cttttcccaccctggatcaagcctgctgacacagagccacctccactgcttgtttacaag 2903 Query: 150 tggtgccaaggtataaataatttgcagga 178 ||||| ||||| || ||||| ||||||| Sbjct: 2904 tggtgtcaaggcattaataacctgcagga 2932
>dbj|AK144232.1| Mus musculus nullipotent stem cell CRL-2070 NE cDNA, RIKEN full-length enriched library, clone:G430136B12 product:pre-mRNA processing factor 8, full insert sequence Length = 3278 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 2818 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 2877 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || |||||| ||| | ||||||||||| |||| |||||||| || |||||||||||| Sbjct: 2878 cttttcccaccctggatcaagcctgctgacacagagccacctccactgcttgtttacaag 2937 Query: 150 tggtgccaaggtataaataatttgcagga 178 ||||| ||||| || ||||| ||||||| Sbjct: 2938 tggtgtcaaggcattaataacctgcagga 2966
>ref|XM_213385.3| PREDICTED: Rattus norvegicus pre-mRNA processing factor 8 (predicted) (Prpf8_predicted), mRNA Length = 7021 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 2756 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 2815 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || ||||| ||| | ||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 2816 cttttcccgccctggatcaagcctgctgacacagaaccccctccactgcttgtttacaag 2875 Query: 150 tggtgccaaggtataaataatttgcagga 178 ||||||||||| || ||||| ||||||| Sbjct: 2876 tggtgccaaggcatcaataacctgcagga 2904
>dbj|AB047391.1| Mus musculus Prp8 mRNA for pre-mRNA processing 8 protein, complete cds Length = 7143 Score = 89.7 bits (45), Expect = 8e-15 Identities = 123/149 (82%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 |||||||| |||||||| ||||| ||||| ||| |||||||||||| || ||||||| Sbjct: 2784 gagaaaataactgatgcttacctggaccagtacctgtggtatgaagcagataaacgccgt 2843 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || |||||| ||| | ||||||||||| |||| |||||||| || |||||||||||| Sbjct: 2844 cttttcccaccctggatcaagcctgctgacacagagccacctccactgcttgtttacaag 2903 Query: 150 tggtgccaaggtataaataatttgcagga 178 ||||| ||||| || ||||| ||||||| Sbjct: 2904 tggtgtcaaggcattaataacctgcagga 2932
>emb|Z98530.2|SPAC4F8 S.pombe chromosome I cosmid c4F8 Length = 35412 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 102 tgggtaaagcctgctgattcagaaccacctcctctacttgtttacaagtggtgccaaggt 161 |||||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct: 13130 tgggtaaagccttctgattcagaacctccacctcttcttgtttacaaatggtgccaagga 13189 Query: 162 ataaataat 170 || |||||| Sbjct: 13190 attaataat 13198
>ref|NM_001019290.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC4F8.12c), partial mRNA Length = 7092 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 102 tgggtaaagcctgctgattcagaaccacctcctctacttgtttacaagtggtgccaaggt 161 |||||||||||| ||||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct: 2884 tgggtaaagccttctgattcagaacctccacctcttcttgtttacaaatggtgccaagga 2943 Query: 162 ataaataat 170 || |||||| Sbjct: 2944 attaataat 2952
>ref|XM_781832.1| PREDICTED: Strongylocentrotus purpuratus similar to pre-mRNA processing factor 8 (LOC581853), mRNA Length = 858 Score = 73.8 bits (37), Expect = 5e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 108 aagcctgctgattcagaaccacctcctctacttgtttacaagtggtgccaaggtataaat 167 ||||| |||||| | ||||||||||| || ||||| ||||||||||| |||||||| || Sbjct: 244 aagccggctgatactgaaccacctccactccttgtctacaagtggtgtcaaggtatcaac 303 Query: 168 aatttgcaggacatatgggac 188 ||| |||||||| |||||||| Sbjct: 304 aatctgcaggacgtatgggac 324 Score = 40.1 bits (20), Expect = 6.5 Identities = 74/92 (80%) Strand = Plus / Plus Query: 342 tacaaggatatgagtcacacaaattcttatgggcttattcggggtcttcagtttgcatct 401 |||||||| |||| |||||| ||||| || || | || || |||||||||||||| || Sbjct: 478 tacaaggacatgaatcacaccaattcctacggtatcatccgaggtcttcagtttgcttcc 537 Query: 402 tttattgtgcagtactatgggctggtgctgga 433 || || || |||| |||||| ||||| ||||| Sbjct: 538 ttcatcgtccagttctatggtctggtcctgga 569
>ref|XM_777687.1| PREDICTED: Strongylocentrotus purpuratus similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) (LOC577459), mRNA Length = 5226 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 108 aagcctgctgattcagaaccacctcctctacttgtttacaagtggtgccaaggtataaat 167 ||||| |||||| | ||||||||||| || || || ||||||||||| |||||||| || Sbjct: 754 aagccggctgatactgaaccacctccactcctcgtctacaagtggtgtcaaggtatcaac 813 Query: 168 aatttgcaggacatatgggac 188 ||| |||||||| |||||||| Sbjct: 814 aatctgcaggacgtatgggac 834
>gb|BC045266.1| Xenopus laevis pre-mRNA processing factor 8, mRNA (cDNA clone MGC:52804 IMAGE:4724870), complete cds Length = 7393 Score = 63.9 bits (32), Expect = 4e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 341 ttacaaggatatgagtcacacaaattcttatgggcttattcggggtcttcagtttgcatc 400 |||||||||||||| || ||||| || || || ||||||| ||||| |||||||| || Sbjct: 3137 ttacaaggatatgaaccatacaaactcctacggcattattcgtggtctgcagtttgcttc 3196 Query: 401 ttttattgtgcagtactatgggctggtgctggatct 436 |||||||| ||||||||||| ||||| ||||||| Sbjct: 3197 ctttattgtccagtactatggtttggtgatggatct 3232 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 33 aaaattactgatgcataccttgaccaatacttgtggtatgaag 75 |||||||||||||| ||||| || || |||||||||||||||| Sbjct: 2829 aaaattactgatgcctacctggatcagtacttgtggtatgaag 2871
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 27 cttgagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgc 86 |||||||| ||||| ||||| |||||||| ||||| || |||||||||| |||||| | Sbjct: 187724 cttgagaagattaccgatgcgtaccttgatcaatatttatggtatgaagctgacaaaaga 187665 Query: 87 cacctcttcccaaattgg 104 | || |||||||||||| Sbjct: 187664 aagcttttcccaaattgg 187647
>emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in linkage group 15, complete sequence Length = 129430 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 390 cagtttgcatcttttattgtgcagtactatgg 421 |||||||| ||||| ||||||||||||||||| Sbjct: 63142 cagtttgcctctttcattgtgcagtactatgg 63173 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 attgatctgactctgttgaacaggcttct 277 ||||||||||| ||| ||||||||||||| Sbjct: 62884 attgatctgacgctgctgaacaggcttct 62912
>ref|XM_961838.1| PREDICTED: Tribolium castaneum similar to CG8877-PA (LOC655310), mRNA Length = 7169 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 123 gaaccacctcctctacttgtttacaagtggtgccaaggtataaataat 170 ||||| |||||| ||||||| ||||||||||| ||||| || |||||| Sbjct: 2923 gaacctcctcctttacttgtctacaagtggtgtcaaggaatcaataat 2970
>ref|XM_694534.1| PREDICTED: Danio rerio zgc:56504 (zgc:56504), mRNA Length = 9226 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 390 cagtttgcatcttttattgtgcagtactatgg 421 |||||||| ||||| ||||||||||||||||| Sbjct: 3161 cagtttgcctctttcattgtgcagtactatgg 3192 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 249 attgatctgactctgttgaacaggcttct 277 ||||||||||| ||| ||||||||||||| Sbjct: 3020 attgatctgacgctgctgaacaggcttct 3048
>ref|XM_711186.1| Candida albicans SC5314 putative spliceosomal factor Prp8p (CaO19_6442), mRNA Length = 7251 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 33 aaaattactgatgcataccttgaccaatacttgtggtatgaag 75 |||||||||||||| || | ||||| |||||||||||||||| Sbjct: 2983 aaaattactgatgcctatttggaccagtacttgtggtatgaag 3025
>ref|XM_711103.1| Candida albicans SC5314 putative spliceosomal factor Prp8p (CaO19_13800), mRNA Length = 7251 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 33 aaaattactgatgcataccttgaccaatacttgtggtatgaag 75 |||||||||||||| || | ||||| |||||||||||||||| Sbjct: 2983 aaaattactgatgcctatttggaccagtacttgtggtatgaag 3025
>ref|XM_451233.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A05280g predicted mRNA Length = 7236 Score = 46.1 bits (23), Expect = 0.11 Identities = 104/131 (79%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 ||||||||||| |||||||| |||||||| || | |||||||||| |||| | | || Sbjct: 2965 gagaaaattaccgatgcatatcttgaccagtatctatggtatgaagctgacagaaggcag 3024 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || ||||| | |||| ||||||| | ||| |||||| || || || ||||||||||| Sbjct: 3025 cttttccctagttggataaagccaggtgactcagaaatcccgccacttcttgtttacaaa 3084 Query: 150 tggtgccaagg 160 ||||| ||||| Sbjct: 3085 tggtgtcaagg 3095
>gb|U00027.2|YSCH9986 Saccharomyces cerevisiae chromosome VIII cosmid 9986 Length = 41666 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 300 attgctgattatgtcactgcaaagaataatgttgt 334 |||||||| ||| |||||||||| ||||||||||| Sbjct: 11506 attgctgactatatcactgcaaaaaataatgttgt 11472
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 46.1 bits (23), Expect = 0.11 Identities = 104/131 (79%) Strand = Plus / Plus Query: 30 gagaaaattactgatgcataccttgaccaatacttgtggtatgaaggggacaaacgccac 89 ||||||||||| |||||||| |||||||| || | |||||||||| |||| | | || Sbjct: 472094 gagaaaattaccgatgcatatcttgaccagtatctatggtatgaagctgacagaaggcag 472153 Query: 90 ctcttcccaaattgggtaaagcctgctgattcagaaccacctcctctacttgtttacaag 149 || ||||| | |||| ||||||| | ||| |||||| || || || ||||||||||| Sbjct: 472154 cttttccctagttggataaagccaggtgactcagaaatcccgccacttcttgtttacaaa 472213 Query: 150 tggtgccaagg 160 ||||| ||||| Sbjct: 472214 tggtgtcaagg 472224
>ref|NM_066384.2| Caenorhabditis elegans yeast PRP (splicing factor) related family member (prp-8) (prp-8) mRNA, complete cds Length = 7382 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||||||||||| | ||||| || ||||| || |||||| | |||||||||| Sbjct: 2710 gagcctcttgagaaagtcactgacgcttacctcgatcaatacctctggtatgaag 2764
>ref|XM_308873.2| Anopheles gambiae str. PEST ENSANGP00000005722 (ENSANGG00000004351), partial mRNA Length = 7167 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 410 gcagtactatgggctggtgctggatct 436 ||||||||| ||||||||||||||||| Sbjct: 3279 gcagtactacgggctggtgctggatct 3305
>emb|Z24732.1|SCPRP8GNA S.cerevisiae PRP8 gene, complete CDS Length = 8151 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 attgctgattatgtcactgcaaagaataatgttgt 334 |||||||| ||| |||||||||| ||||||||||| Sbjct: 3762 attgctgactatatcactgcaaaaaataatgttgt 3796
>gb|L14433.1| Caenorhabditis elegans cosmid C50C3, complete sequence Length = 44733 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 21 gagcctcttgagaaaattactgatgcataccttgaccaatacttgtggtatgaag 75 ||||||||||||||| | ||||| || ||||| || |||||| | |||||||||| Sbjct: 9273 gagcctcttgagaaagtcactgacgcttacctcgatcaatacctctggtatgaag 9327
>gb|L29421.1|YSCDBF3A Saccharomyces cerevisiae DBF3 gene, complete cds Length = 7845 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 300 attgctgattatgtcactgcaaagaataatgttgt 334 |||||||| ||| |||||||||| ||||||||||| Sbjct: 3456 attgctgactatatcactgcaaaaaataatgttgt 3490
>ref|XM_359533.1| Magnaporthe grisea 70-15 hypothetical protein (MG05244.4) partial mRNA Length = 7110 Score = 44.1 bits (22), Expect = 0.42 Identities = 55/66 (83%) Strand = Plus / Plus Query: 5 cccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatactt 64 |||||| || || |||||||| ||||||| |||| || || ||||||||||| ||||| Sbjct: 2823 cccggtgtacgacattgagccaattgagaagattagcgacgcctaccttgaccagtactt 2882 Query: 65 gtggta 70 |||||| Sbjct: 2883 gtggta 2888
>gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110110 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 atgctgcagacaaaatttgaga 234 |||||||||||||||||||||| Sbjct: 11581 atgctgcagacaaaatttgaga 11560
>gb|DQ071643.1| Uncultured Enterococcus sp. putative mannitol regulator-like gene, partial sequence Length = 495 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 ttgaaaaaattgatctgactc 261 ||||||||||||||||||||| Sbjct: 117 ttgaaaaaattgatctgactc 137
>ref|XM_657035.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4523.2), mRNA Length = 8838 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 19 ttgagcctcttgagaaaattactgatgcataccttga 55 ||||||| ||||||| || ||||||||||||||||| Sbjct: 2789 ttgagcccattgagaagatcactgatgcataccttga 2825
>gb|AF397148.1|AF397148 Paramecium tetraurelia macronuclear pre-mRNA processing factor 8 gene, complete cds Length = 8305 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 294 cataacattgctgattatgtcactgcaaagaataatgttgt 334 |||||||| || |||||| | ||||| |||||||||||||| Sbjct: 4044 cataacatagcagattatatgactgccaagaataatgttgt 4084
>ref|XM_624011.1| PREDICTED: Apis mellifera similar to ENSANGP00000005722 (LOC551620), partial mRNA Length = 6571 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 306 gattatgtcactgcaaagaataatgttgt 334 |||||| | |||||||||||||||||||| Sbjct: 2582 gattatatgactgcaaagaataatgttgt 2610
>emb|AL671935.30| Mouse DNA sequence from clone RP23-421J13 on chromosome X, complete sequence Length = 194258 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggtcttcagtttgcatctttt 404 ||||||||||||||||||||| Sbjct: 152271 ggtcttcagtttgcatctttt 152251
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 aaatttgagaagttctttgaaaaa 248 |||||||| ||||||||||||||| Sbjct: 119521 aaatttgaaaagttctttgaaaaa 119498
>ref|XM_415805.1| PREDICTED: Gallus gallus similar to splicing factor Prp8 (LOC417559), mRNA Length = 7356 Score = 40.1 bits (20), Expect = 6.5 Identities = 56/68 (82%) Strand = Plus / Plus Query: 108 aagcctgctgattcagaaccacctcctctacttgtttacaagtggtgccaaggtataaat 167 ||||||||||| | ||||| ||||| || | || ||||||||||||||||| || ||| Sbjct: 3043 aagcctgctgacactgaacctcctccactgttagtgtacaagtggtgccaaggcattaat 3102 Query: 168 aatttgca 175 ||| |||| Sbjct: 3103 aatctgca 3110
>gb|AC131804.4| Mus musculus BAC clone RP24-553C6 from chromosome 1, complete sequence Length = 138699 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tataaataatttgcaggaca 180 |||||||||||||||||||| Sbjct: 105498 tataaataatttgcaggaca 105479
>ref|XM_816531.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508461.320) partial mRNA Length = 7194 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tacaagtggtgccaaggtataaat 167 ||||||||||| |||||||||||| Sbjct: 2998 tacaagtggtgtcaaggtataaat 3021
>ref|XM_648153.1| Entamoeba histolytica HM-1:IMSS splicing factor Prp8 (89.t00016) partial mRNA Length = 6813 Score = 40.1 bits (20), Expect = 6.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 33 aaaattactgatgcataccttgaccaatacttgtggtatgaagg 76 |||||| | |||||||| ||||| ||||| || ||||||||||| Sbjct: 2575 aaaattgcagatgcatatcttgatcaatatttatggtatgaagg 2618
>emb|CR361559.12| Zebrafish DNA sequence from clone DKEY-3P10 in linkage group 23, complete sequence Length = 246041 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 227 atttgagaagttctttgaaaaaattgat 254 ||||||||||||| |||||||| ||||| Sbjct: 194685 atttgagaagttccttgaaaaatttgat 194658
>emb|AL136983.11| Human DNA sequence from clone RP11-247D3 on chromosome 1 Contains part of the ASTN gene for astrotactin, complete sequence Length = 39967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 aggacatatgggacactagc 194 |||||||||||||||||||| Sbjct: 27005 aggacatatgggacactagc 27024
>emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 6/8 Length = 349895 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 aacgccacctcttcccaaattggg 105 |||||||||||| ||||||||||| Sbjct: 60972 aacgccacctctgcccaaattggg 60995
>emb|CR385081.7| Zebrafish DNA sequence from clone CH211-59O9 in linkage group 25, complete sequence Length = 182806 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgcatcttttattgtgcagt 414 |||||||||||||||||||| Sbjct: 182 tgcatcttttattgtgcagt 163
>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence Length = 122928 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 aaaatttgagaagttctttgaaaa 247 |||| ||||||||||||||||||| Sbjct: 71457 aaaacttgagaagttctttgaaaa 71480
>gb|AY026228.1|Y026225S07 Macaca mulatta alpha-1,3-galactosyltransferase pseudogene, exon 5 Length = 1180 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aaattgagcctcttgagaaa 35 |||||||||||||||||||| Sbjct: 1004 aaattgagcctcttgagaaa 1023
>ref|NM_060692.1| Caenorhabditis elegans F41D3.4 (F41D3.4) mRNA, complete cds Length = 2010 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 caaaatttgagaagttcttt 242 |||||||||||||||||||| Sbjct: 1486 caaaatttgagaagttcttt 1467
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 taatttgcaggacatatgggacac 190 ||||||||||||||||||| |||| Sbjct: 31361186 taatttgcaggacatatggaacac 31361209
>gb|AC154345.2| Mus musculus BAC clone RP23-226O12 from chromosome 16, complete sequence Length = 169390 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 agttctttgaaaaaattgat 254 |||||||||||||||||||| Sbjct: 5280 agttctttgaaaaaattgat 5261
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 taatttgcaggacatatgggacac 190 ||||||||||||||||||| |||| Sbjct: 115469 taatttgcaggacatatggaacac 115492
>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence Length = 175345 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ccaatacttgtggtatgaag 75 |||||||||||||||||||| Sbjct: 24944 ccaatacttgtggtatgaag 24963
>ref|NM_208509.1| Eremothecium gossypii ABR207Wp (ABR207W), mRNA Length = 7209 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tcactgcaaagaataatgtt 332 |||||||||||||||||||| Sbjct: 3221 tcactgcaaagaataatgtt 3240
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19, complete sequence Length = 191582 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ctgcagacaaaatttgagaa 235 |||||||||||||||||||| Sbjct: 184843 ctgcagacaaaatttgagaa 184862
>emb|Z81537.1|CEF41D3 Caenorhabditis elegans Cosmid F41D3, complete sequence Length = 39030 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 caaaatttgagaagttcttt 242 |||||||||||||||||||| Sbjct: 10450 caaaatttgagaagttcttt 10469
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tgagaagttctttgaaaaaa 249 |||||||||||||||||||| Sbjct: 2798921 tgagaagttctttgaaaaaa 2798902
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tcactgcaaagaataatgtt 332 |||||||||||||||||||| Sbjct: 792725 tcactgcaaagaataatgtt 792744
>gb|AC168048.3| Mus musculus BAC clone RP24-335I13 from chromosome 16, complete sequence Length = 163057 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 agttctttgaaaaaattgat 254 |||||||||||||||||||| Sbjct: 44601 agttctttgaaaaaattgat 44620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,769,909 Number of Sequences: 3902068 Number of extensions: 4769909 Number of successful extensions: 92557 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92265 Number of HSP's gapped (non-prelim): 285 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
