>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 616

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
 Frame = +3

Query: 156 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS-M 332
           +L++GA+  I +   G  NI+P+LQV ++R +TT    G+   RYR+L+SDG+++  S M
Sbjct: 4   QLSEGAIAAIMQ--KGDTNIKPILQVINIRPITT----GNSPPRYRLLMSDGLNTLSSFM 57

Query: 333 LATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQS 470
           LAT  N LV    L    V  +H    +T+++ RR++I++ELEVL+S
Sbjct: 58  LATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 104

>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 616

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 41/107 (38%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = +3

Query: 156 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS-M 332
           +L++GA+  I +   G  NI+P+LQV ++R +TT    G+   RYR+L+SDG+++  S M
Sbjct: 4   QLSEGAIAAIMQ--KGDTNIKPILQVINIRPITT----GNSPPRYRLLMSDGLNTLSSFM 57

Query: 333 LATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQS 470
            AT  N LV    L    V  ++    +T+++ RR++I++ELEVL+S
Sbjct: 58  SATQLNPLVEQEQLSSNCVCQINRFIVNTLKDGRRVVILMELEVLKS 104

>RFA1_MOUSE (Q8VEE4) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 623

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 38/110 (34%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
 Frame = +3

Query: 159 LTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS-ML 335
           L++GA+  + +  +   +I+P+LQV ++R ++T    G+ S RYR+L+SDG+++  S ML
Sbjct: 5   LSEGAIEVMIQQENT--SIKPILQVINIRPIST----GNRSPRYRLLMSDGLNTLSSFML 58

Query: 336 ATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQSECDL 482
           AT  N LV  G L    V  +H    +T+++ R+++++++LEV++S  D+
Sbjct: 59  ATQLNTLVEGGQLASNCVCQVHKFIVNTLKDGRKVVVLMDLEVMKSAEDV 108

>RFA1_SCHPO (Q92372) Replication factor-A protein 1 (Single-stranded|
           DNA-binding protein p68 subunit)
          Length = 609

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 39/105 (37%), Positives = 60/105 (57%)
 Frame = +3

Query: 150 APRLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS 329
           A RL+ GA+R I           P+LQV  ++ + + N      +RYR++LSD ++  QS
Sbjct: 2   AERLSVGALRIINTSDASSFPPNPILQVLTVKELNS-NPTSGAPKRYRVVLSDSINYAQS 60

Query: 330 MLATTHNHLVNTGALRIGSVVHLHDITWHTIQNRRIIIVVELEVL 464
           ML+T  NHLV    L+ G+ V L   T + ++ R+I+IV+ L VL
Sbjct: 61  MLSTQLNHLVAENKLQKGAFVQLTQFTVNVMKERKILIVLGLNVL 105

>RFA1_XENTR (Q5FW17) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 609

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
 Frame = +3

Query: 153 PRLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS- 329
           P L++GA+  I     G  + +P LQV ++R++ T    G+   RYR+L+SDG+++  S 
Sbjct: 4   PVLSEGAISAIL---GGDSSCKPTLQVINIRSINT----GNGPPRYRLLMSDGLNTLSSF 56

Query: 330 MLATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQSECDLI 485
           MLAT  N LV+   L    +  +     + +++ RR+IIV+E+EVL+S  DL+
Sbjct: 57  MLATQLNFLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMEMEVLKS-ADLV 108

>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (p70)
          Length = 609

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
 Frame = +3

Query: 153 PRLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS- 329
           P+L++GA+  +     G  + +P LQV ++R + T    G+   RYR+L+SDG+++  S 
Sbjct: 4   PQLSEGAISAML---GGDSSCKPTLQVINIRPINT----GNGPPRYRLLMSDGLNTLSSF 56

Query: 330 MLATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQSECDLI 485
           MLAT  N LV+   L    +  +     + +++ RR+IIV+EL+VL+S  DL+
Sbjct: 57  MLATQLNSLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMELDVLKS-ADLV 108

>RFA1_CHICK (Q5ZJJ2) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 614

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 39/113 (34%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +3

Query: 156 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS-M 332
           RL++GA+  I +   G    +PVLQV + R + T    G+   RYR+L+SDGV++  S M
Sbjct: 4   RLSEGAIAAIMQ---GENVYKPVLQVINTRAIAT----GNGPPRYRVLMSDGVNTLSSFM 56

Query: 333 LATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQSECDLIG 488
           LAT  N LV    L    +  ++    +++++ RR++I+++L+VL++  D++G
Sbjct: 57  LATQLNPLVEEERLSAHCICQVNRFIVNSLKDGRRVVILMDLDVLKT-ADMVG 108

>RFA1_BRARE (Q6NY74) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 601

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
 Frame = +3

Query: 156 RLTQGAVREIWELPDGPGNIQPVLQVADLRTVTTKNHVGHLSERYRMLLSDGVHSQQS-M 332
           RL++GA+     L  G     P+LQ  ++R +   N V     R+R+++SDG+H+  S M
Sbjct: 4   RLSEGAIES---LSKGTEVNNPILQCVNIRKIDGGNGVS----RFRVMMSDGLHTMSSFM 56

Query: 333 LATTHNHLVNTGALRIGSVVHLHDITWHTIQN-RRIIIVVELEVLQSECDLIG 488
           L+T  N +     L    V  L     + +++ RR+++++++EVL+S   + G
Sbjct: 57  LSTQLNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDIEVLKSADQMPG 109

>RFA1_DROME (Q24492) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (Single-stranded
           DNA-binding protein) (DmRPA1) (p70)
          Length = 603

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
 Frame = +3

Query: 219 PVLQVADLRTVTTKNHVGHLSERYRMLLSDGVH-SQQSMLATTHNHLVNTGALRIGSVVH 395
           PVLQ+  ++ + +       SERYR+L+SDG + +  +MLA+  N + + G L   ++V 
Sbjct: 23  PVLQILAIKKINSAAD----SERYRILISDGKYFNSYAMLASQLNVMQHNGELEEFTIVQ 78

Query: 396 LHDITWHTI----QNRRIIIVVELEVL 464
           L       +      +R++I+ EL V+
Sbjct: 79  LDKYVTSLVGKDGAGKRVLIISELTVV 105

>SYFA_METTH (O26837) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 511

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +3

Query: 78  ISPAQIRNQSNSTPPRPAGDGMEGAPRLTQGAVREIWELPDGPGNIQPVLQ----VADLR 245
           IS   +   S+ TP R A + +     L +G+VR I ELPD        L+    + D+R
Sbjct: 128 ISQGMVSAVSDETPERGADERLLEL-LLERGSVR-IRELPDELRGALKDLKGRKGIVDIR 185

Query: 246 TVTTKNHVGHLSERYRMLLSDGVHSQQSMLATTHNHLVNTGALR 377
            +  K H   L+   R LL  G+   +     TH HL  +GA R
Sbjct: 186 KI--KRHTIELTTEGRKLLERGIEIVEEATQVTHEHL-KSGAWR 226

>CORO7_RAT (O35828) Coronin-7 (70 kDa WD repeat tumor rejection antigen)|
           (Fragment)
          Length = 443

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 265 WFLVVTVRRSATCSTGWMFPGPSGSSH--ISLTAP 167
           W+LV+T   SA+CS  W+ P      H   S+ AP
Sbjct: 216 WYLVLTAEVSASCSCTWLMPWQKALQHCWASIVAP 250

>HPLN2_HUMAN (Q9GZV7) Hyaluronan and proteoglycan link protein 2 precursor|
           (Brain link protein 1)
          Length = 340

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 229 CSTGWMFPGPSGSSHISLTAPCVSRGAPSIPS 134
           C+ GW+  G      ++  APC  RG P I S
Sbjct: 194 CNAGWLLEGSVRYPVLTARAPCGGRGRPGIRS 225

>CI106_HUMAN (Q8NAJ2) Hypothetical protein C9orf106|
          Length = 232

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = -2

Query: 325 CWEWTPSESSMR*RSDRWP---TWFLVVTVRRSATCSTGW--MFPGPSGSSHISLTAPCV 161
           C  W P   S R     WP   T FL +     +  S+G   + P PS S+H     PC+
Sbjct: 21  CSSWNPPLFSPRPLPRLWPLPGTPFLPIRALPFSASSSGKSSLVPSPSSSAHSGFRTPCL 80

>TLX2_HUMAN (O43763) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Neural crest homeobox protein)
          Length = 284

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -2

Query: 205 GPSG----SSHISLTAPCVSRGAPSIPSPAGRGG 116
           GP G     +H  L  P  + GAP++P P+G GG
Sbjct: 76  GPGGVIRVPAHRPLPVPPPAGGAPAVPGPSGLGG 109

>COFA1_HUMAN (P39059) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV) (Restin) (Related to endostatin)]
          Length = 1388

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 208  PGPSGSSHISLTAPCVSRGAPSIPSPAGRG 119
            PGP+G    ++  P    GAP +P P G G
Sbjct: 1061 PGPAGQKGETVVGPQGPPGAPGLPGPPGFG 1090

>PHSA_STRAT (Q53692) Phenoxazinone synthase (EC 1.-.-.-) (PHS)|
          Length = 642

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 253 VTVRRSATCSTGWMFPGPSGSSHISLTAPCVSRGAPSIPSP---AGRGGVE 110
           + VRR       W    P GS +  +T+  V  G P  P+P    GRGGVE
Sbjct: 97  IEVRRGQRVRIAWTNRIPKGSEY-PVTSVEVPLGPPGTPAPNTEPGRGGVE 146

>SFTPD_HUMAN (P35247) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 375

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 208 PGPSGSSHISLTAPCVSRGAPSIPSPAGRGG 116
           PGP G      T P    G P +P PAGR G
Sbjct: 96  PGPKGD-----TGPSGPPGPPGVPGPAGREG 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,650,984
Number of Sequences: 219361
Number of extensions: 877375
Number of successful extensions: 3480
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3467
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)