ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482758.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
2gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.0
3gb|AF160191.1| Aplysia californica MIP-related peptide precursor... 40 6.0
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
5dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
6gb|M80674.1|STMTCREP Streptomyces glaucescens tcm operon 40 6.0

>ref|XM_482758.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 gcgcagcacggcagcagcag 128
           ||||||||||||||||||||
Sbjct: 114 gcgcagcacggcagcagcag 95



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    actcgcctccggctgcgagc 389
              ||||||||||||||||||||
Sbjct: 234545 actcgcctccggctgcgagc 234526



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>gb|AF160191.1| Aplysia californica MIP-related peptide precursor (MRP) mRNA,
           complete cds
          Length = 3263

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 gcagcacggcagcagcagga 130
           ||||||||||||||||||||
Sbjct: 602 gcagcacggcagcagcagga 621



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 109      gcgcagcacggcagcagcag 128
                ||||||||||||||||||||
Sbjct: 22368573 gcgcagcacggcagcagcag 22368554



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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   gcgcagcacggcagcagcag 128
             ||||||||||||||||||||
Sbjct: 65556 gcgcagcacggcagcagcag 65537



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>gb|M80674.1|STMTCREP Streptomyces glaucescens tcm operon
          Length = 13123

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   gaccccctgccgcgcgcgga 436
             ||||||||||||||||||||
Sbjct: 11882 gaccccctgccgcgcgcgga 11901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,733,251
Number of Sequences: 3902068
Number of extensions: 1733251
Number of successful extensions: 32222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32169
Number of HSP's gapped (non-prelim): 53
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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