>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 42/104 (40%), Positives = 48/104 (46%)
 Frame = +2

Query: 200 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 379
           Y  AL +LTFN KPII  LT IA Q                  + P   KLP+LYLLDSI
Sbjct: 8   YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66

Query: 380 VKNIGQEYVADFATRLQKVFCFAYREVHPKQHPCMRHLFRTWSQ 511
            KN+G  Y   F   L   F  AY  V P+    +  L  TW Q
Sbjct: 67  SKNLGAPYTYFFGLHLFSTFMSAYTVVEPRLRLKLDQLLATWKQ 110

>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA|
           cleavage complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 35/105 (33%), Positives = 53/105 (50%)
 Frame = +2

Query: 200 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 379
           Y+ +L +LTFN KP I  LTI+A ++                 + P  +KLP +YL+DSI
Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179

Query: 380 VKNIGQEYVADFATRLQKVFCFAYREVHPKQHPCMRHLFRTWSQV 514
           VKN+G+EY+  F   L   F   + +V       +  L  TW ++
Sbjct: 180 VKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEI 224

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 33/106 (31%), Positives = 50/106 (47%)
 Frame = +2

Query: 188 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 367
           +V  +   L ELTFN +PIIT LT +A ++                  +P +QKL + Y 
Sbjct: 8   IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66

Query: 368 LDSIVKNIGQEYVADFATRLQKVFCFAYREVHPKQHPCMRHLFRTW 505
           LDSI KN+G  Y   F+  L  ++   Y  V       + ++F+ W
Sbjct: 67  LDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = +2

Query: 200 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 379
           Y+E LAEL  N K  I  LTI+A                      P  QKL  +Y+ DSI
Sbjct: 11  YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69

Query: 380 VKNIGQ--EYVADFATRLQKVFCFAYREVHPKQHPCMRHLFRTWS 508
           +KN+ +  +Y A FA ++  +F  A+R+   +    +  +  TW+
Sbjct: 70  LKNVKKPNDYDALFARKIVSMFEHAFRQGDERIRTSLYRIRVTWA 114

>NARG1_PONPY (Q5R4J9) NMDA receptor-regulated protein 1|
          Length = 866

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +2

Query: 326 LEVPVEQKLPSLYLLDSIVKNIGQEYV---------ADFATRLQKVF-CFAYREVHPKQH 475
           +E P+E+ +  L  L ++VKN  + ++           F   LQ V   FA    HP  H
Sbjct: 650 VETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFRKEKFLLMLQSVKRAFAIDSSHPWLH 709

Query: 476 PCMRHLFRT 502
            CM  LF T
Sbjct: 710 ECMIRLFNT 718

>NARG1_HUMAN (Q9BXJ9) NMDA receptor-regulated protein 1 (N-terminal|
           acetyltransferase) (Tubedown-1 protein) (Tbdn100)
           (Gastric cancer antigen Ga19)
          Length = 866

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
 Frame = +2

Query: 326 LEVPVEQKLPSLYLLDSIVKNIGQEYV---------ADFATRLQKVF-CFAYREVHPKQH 475
           +E P+E+ +  L  L ++VKN  + ++           F   LQ V   FA    HP  H
Sbjct: 650 VETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFRKEKFLLMLQSVKRAFAIDSSHPWLH 709

Query: 476 PCMRHLFRT 502
            CM  LF T
Sbjct: 710 ECMIRLFNT 718


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,793,418
Number of Sequences: 219361
Number of extensions: 836723
Number of successful extensions: 2461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)