ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl20a03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088A19, full insert sequence Length = 2936 Score = 603 bits (304), Expect = e-169 Identities = 439/484 (90%) Strand = Plus / Plus Query: 23 tccgccatggctcccacggcgccttcgccggcgaagtccgcctccccgtcccaaccatcc 82 |||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| Sbjct: 57 tccgccatggctccgacggcgcccacggcggcgaagtccgcctccccgtcccagccatcc 116 Query: 83 ggcaagagcgaggtgtcggatctgaagcagcaactgcggcagctggcggggagccgtgca 142 || |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || Sbjct: 117 gggaagagcgaggtggcggatctgaagcagcagctgcggcagctggcggggagccgcgcg 176 Query: 143 ccagacgctgatgatcagcgccgggatgtcttcaagcgggtgatctcttgcatgaccgca 202 || ||||| || || ||||| |||| |||||||||||||||||||| |||||||| || Sbjct: 177 cccgacgccgacgaccagcggagggacgtcttcaagcgggtgatctcctgcatgacggcc 236 Query: 203 ggtatcgacgtctcggcggcgttcggggagatggtgctctgctccgccacctccgacgtt 262 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 ggcatcgacgtgtcggcggcgttcggggagatggtgctctgctccgccacctccgacgtc 296 Query: 263 gtgctcaagaagatgtgctacctctacgtcggtgtccatgcgcgcgcccatccggacctc 322 ||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||| Sbjct: 297 gtgctgaagaagatgtgctacctctacgtcggcgtccacgcgcgcaaccacccggacctc 356 Query: 323 gccctcctcaccatcaacttcctccagcgcgactgccgcgaccaggaccccaccatccgc 382 || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct: 357 gcgctcctcaccatcaacttcctccagcgcgactgccacgaccaggaccccaccatacgc 416 Query: 383 ggccttgctctccgcagcctctgctccctccgcgttccaaaccttgtcgagtaccttgtt 442 ||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 417 ggcctggcactccgcagcctctgctccctccgcgttcccaacctcgtcgagtaccttgtc 476 Query: 443 acgccgctcaccacagggctgaaggaccctagtgcctacgttcggatggtcgctgctgtt 502 |||||||| |||| ||||| |||||||| ||||| ||||| |||||| ||||||||||| Sbjct: 477 tcgccgctcgccactgggctcaaggaccccagtgcttacgtccggatgatcgctgctgtt 536 Query: 503 ggtg 506 |||| Sbjct: 537 ggtg 540
>ref|NM_192888.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2541 Score = 591 bits (298), Expect = e-166 Identities = 433/478 (90%) Strand = Plus / Plus Query: 29 atggctcccacggcgccttcgccggcgaagtccgcctccccgtcccaaccatccggcaag 88 |||||||| |||||||| || ||||||||||||||||||||||||| |||||||| ||| Sbjct: 1 atggctccgacggcgcccacggcggcgaagtccgcctccccgtcccagccatccgggaag 60 Query: 89 agcgaggtgtcggatctgaagcagcaactgcggcagctggcggggagccgtgcaccagac 148 ||||||||| |||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 61 agcgaggtggcggatctgaagcagcagctgcggcagctggcggggagccgcgcgcccgac 120 Query: 149 gctgatgatcagcgccgggatgtcttcaagcgggtgatctcttgcatgaccgcaggtatc 208 || || || ||||| |||| |||||||||||||||||||| |||||||| || || ||| Sbjct: 121 gccgacgaccagcggagggacgtcttcaagcgggtgatctcctgcatgacggccggcatc 180 Query: 209 gacgtctcggcggcgttcggggagatggtgctctgctccgccacctccgacgttgtgctc 268 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 181 gacgtgtcggcggcgttcggggagatggtgctctgctccgccacctccgacgtcgtgctg 240 Query: 269 aagaagatgtgctacctctacgtcggtgtccatgcgcgcgcccatccggacctcgccctc 328 |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| ||| Sbjct: 241 aagaagatgtgctacctctacgtcggcgtccacgcgcgcaaccacccggacctcgcgctc 300 Query: 329 ctcaccatcaacttcctccagcgcgactgccgcgaccaggaccccaccatccgcggcctt 388 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 301 ctcaccatcaacttcctccagcgcgactgccacgaccaggaccccaccatacgcggcctg 360 Query: 389 gctctccgcagcctctgctccctccgcgttccaaaccttgtcgagtaccttgttacgccg 448 || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 361 gcactccgcagcctctgctccctccgcgttcccaacctcgtcgagtaccttgtctcgccg 420 Query: 449 ctcaccacagggctgaaggaccctagtgcctacgttcggatggtcgctgctgttggtg 506 ||| |||| ||||| |||||||| ||||| ||||| |||||| ||||||||||||||| Sbjct: 421 ctcgccactgggctcaaggaccccagtgcttacgtccggatgatcgctgctgttggtg 478
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 525 bits (265), Expect = e-146 Identities = 382/421 (90%) Strand = Plus / Plus Query: 86 aagagcgaggtgtcggatctgaagcagcaactgcggcagctggcggggagccgtgcacca 145 |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 24991077 aagagcgaggtggcggatctgaagcagcagctgcggcagctggcggggagccgcgcgccc 24991136 Query: 146 gacgctgatgatcagcgccgggatgtcttcaagcgggtgatctcttgcatgaccgcaggt 205 ||||| || || ||||| |||| |||||||||||||||||||| |||||||| || || Sbjct: 24991137 gacgccgacgaccagcggagggacgtcttcaagcgggtgatctcctgcatgacggccggc 24991196 Query: 206 atcgacgtctcggcggcgttcggggagatggtgctctgctccgccacctccgacgttgtg 265 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 24991197 atcgacgtgtcggcggcgttcggggagatggtgctctgctccgccacctccgacgtcgtg 24991256 Query: 266 ctcaagaagatgtgctacctctacgtcggtgtccatgcgcgcgcccatccggacctcgcc 325 || |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| Sbjct: 24991257 ctgaagaagatgtgctacctctacgtcggcgtccacgcgcgcaaccacccggacctcgcg 24991316 Query: 326 ctcctcaccatcaacttcctccagcgcgactgccgcgaccaggaccccaccatccgcggc 385 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 24991317 ctcctcaccatcaacttcctccagcgcgactgccacgaccaggaccccaccatacgcggc 24991376 Query: 386 cttgctctccgcagcctctgctccctccgcgttccaaaccttgtcgagtaccttgttacg 445 || || ||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 24991377 ctggcactccgcagcctctgctccctccgcgttcccaacctcgtcgagtaccttgtctcg 24991436 Query: 446 ccgctcaccacagggctgaaggaccctagtgcctacgttcggatggtcgctgctgttggt 505 |||||| |||| ||||| |||||||| ||||| ||||| |||||| |||||||||||||| Sbjct: 24991437 ccgctcgccactgggctcaaggaccccagtgcttacgtccggatgatcgctgctgttggt 24991496 Query: 506 g 506 | Sbjct: 24991497 g 24991497 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 23 tccgccatggctcccacggcgccttcgccggcgaagtccgcctccccgtcccaaccatcc 82 |||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| Sbjct: 24990909 tccgccatggctccgacggcgcccacggcggcgaagtccgcctccccgtcccagccatcc 24990968 Query: 83 gg 84 || Sbjct: 24990969 gg 24990970
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 525 bits (265), Expect = e-146 Identities = 382/421 (90%) Strand = Plus / Plus Query: 86 aagagcgaggtgtcggatctgaagcagcaactgcggcagctggcggggagccgtgcacca 145 |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || || Sbjct: 63600 aagagcgaggtggcggatctgaagcagcagctgcggcagctggcggggagccgcgcgccc 63659 Query: 146 gacgctgatgatcagcgccgggatgtcttcaagcgggtgatctcttgcatgaccgcaggt 205 ||||| || || ||||| |||| |||||||||||||||||||| |||||||| || || Sbjct: 63660 gacgccgacgaccagcggagggacgtcttcaagcgggtgatctcctgcatgacggccggc 63719 Query: 206 atcgacgtctcggcggcgttcggggagatggtgctctgctccgccacctccgacgttgtg 265 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 63720 atcgacgtgtcggcggcgttcggggagatggtgctctgctccgccacctccgacgtcgtg 63779 Query: 266 ctcaagaagatgtgctacctctacgtcggtgtccatgcgcgcgcccatccggacctcgcc 325 || |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||| Sbjct: 63780 ctgaagaagatgtgctacctctacgtcggcgtccacgcgcgcaaccacccggacctcgcg 63839 Query: 326 ctcctcaccatcaacttcctccagcgcgactgccgcgaccaggaccccaccatccgcggc 385 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 63840 ctcctcaccatcaacttcctccagcgcgactgccacgaccaggaccccaccatacgcggc 63899 Query: 386 cttgctctccgcagcctctgctccctccgcgttccaaaccttgtcgagtaccttgttacg 445 || || ||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 63900 ctggcactccgcagcctctgctccctccgcgttcccaacctcgtcgagtaccttgtctcg 63959 Query: 446 ccgctcaccacagggctgaaggaccctagtgcctacgttcggatggtcgctgctgttggt 505 |||||| |||| ||||| |||||||| ||||| ||||| |||||| |||||||||||||| Sbjct: 63960 ccgctcgccactgggctcaaggaccccagtgcttacgtccggatgatcgctgctgttggt 64019 Query: 506 g 506 | Sbjct: 64020 g 64020 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 23 tccgccatggctcccacggcgccttcgccggcgaagtccgcctccccgtcccaaccatcc 82 |||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| Sbjct: 63432 tccgccatggctccgacggcgcccacggcggcgaagtccgcctccccgtcccagccatcc 63491 Query: 83 gg 84 || Sbjct: 63492 gg 63493
>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence Length = 120977 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 tcctcaccatcaacttcctcca 348 |||||||||||||||||||||| Sbjct: 12456 tcctcaccatcaacttcctcca 12477
>gb|AC123069.4| Mus musculus BAC clone RP23-23B21 from 9, complete sequence Length = 162961 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 385 ccttgctctccgcagcctctgctccctcc 413 ||||| ||||||||||||||||| ||||| Sbjct: 109526 ccttgttctccgcagcctctgctgcctcc 109498
>emb|AL121920.21|HSJ539E24 Human DNA sequence from clone RP4-539E24 on chromosome 20 Contains the TFAP2C gene for transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma), the PTMAP6 gene for prothymosin alpha pseudogene 6 and a CpG island, complete sequence Length = 86363 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 tcctcaccatcaacttcctcc 347 ||||||||||||||||||||| Sbjct: 85685 tcctcaccatcaacttcctcc 85705
>gb|AC150392.2| Branchiostoma floridae clone CH302-12P3, complete sequence Length = 180902 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ctcaccatcaacttcctcca 348 |||||||||||||||||||| Sbjct: 40510 ctcaccatcaacttcctcca 40529
>gb|AC090330.22| Homo sapiens chromosome 18, clone RP11-813B21, complete sequence Length = 160530 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 ctgaagcagcaactgcggcagctg 127 ||||||||||||||| |||||||| Sbjct: 158043 ctgaagcagcaactgtggcagctg 158066
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gagccgtgcaccagacgctg 152 |||||||||||||||||||| Sbjct: 28889 gagccgtgcaccagacgctg 28870
>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence Length = 41295 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gcgcgcgcccatccggacctcgcc 325 |||||||||||| ||||||||||| Sbjct: 10670 gcgcgcgcccatgcggacctcgcc 10647
>gb|DQ397575.1| Cenarchaeum symbiosum clone C11D05, complete sequence Length = 41867 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gcgcgcgcccatccggacctcgcc 325 |||||||||||| ||||||||||| Sbjct: 28130 gcgcgcgcccatgcggacctcgcc 28107
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 acggcgccttcgccggcgaa 57 |||||||||||||||||||| Sbjct: 600917 acggcgccttcgccggcgaa 600936
>gb|AC091551.14| Homo sapiens chromosome 18, clone RP11-729G3, complete sequence Length = 156211 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 ctgaagcagcaactgcggcagctg 127 ||||||||||||||| |||||||| Sbjct: 140301 ctgaagcagcaactgtggcagctg 140278
>emb|AL113181.1|CNS01AO5 Botrytis cinerea strain T4 cDNA library Length = 720 Score = 40.1 bits (20), Expect = 6.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 318 acctcgccctcctcaccatcaacttcct 345 |||||||||||||| ||||||||||||| Sbjct: 239 acctcgccctcctc-ccatcaacttcct 265
>gb|AC092156.2| Homo sapiens BAC clone RP11-326J14 from 2, complete sequence Length = 168610 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 agaagatgtgctacctctac 289 |||||||||||||||||||| Sbjct: 48507 agaagatgtgctacctctac 48526
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ccggcaagagcgaggtgtcg 100 |||||||||||||||||||| Sbjct: 7495757 ccggcaagagcgaggtgtcg 7495776
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 agcagcaactgcggcagctg 127 |||||||||||||||||||| Sbjct: 392961 agcagcaactgcggcagctg 392942
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 atccggacctcgccctcctc 331 |||||||||||||||||||| Sbjct: 844469 atccggacctcgccctcctc 844488 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,955,213 Number of Sequences: 3902068 Number of extensions: 2955213 Number of successful extensions: 57095 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 56715 Number of HSP's gapped (non-prelim): 381 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
