ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PECA1_MOUSE (Q08481) Platelet endothelial cell adhesion molecule... 28 5.4

>PECA1_MOUSE (Q08481) Platelet endothelial cell adhesion molecule precursor|
           (PECAM-1) (CD31 antigen)
          Length = 727

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 44  KGREGK*ACTEEGRQLSSRSSPRSKTQA 127
           K +EG+  CT   R  S R+SPRS T A
Sbjct: 553 KKQEGQYYCTASNRASSMRTSPRSSTLA 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,459,336
Number of Sequences: 219361
Number of extensions: 430110
Number of successful extensions: 1289
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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