ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19h11 |
|---|---|
| Clone Library Name | barley_pub |
>ARFF_ARATH (Q9ZTX8) Auxin response factor 6| Length = 933 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/27 (77%), Positives = 24/27 (88%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRVV 423 K+ LNSELWHACAGPLV LP +G+RVV Sbjct: 17 KRVLNSELWHACAGPLVSLPPVGSRVV 43
>ARFH_ARATH (Q9FGV1) Auxin response factor 8| Length = 811 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/27 (77%), Positives = 24/27 (88%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRVV 423 +K LNSELWHACAGPLV LP+ G+RVV Sbjct: 16 EKCLNSELWHACAGPLVSLPSSGSRVV 42
>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)| (Auxin-responsive protein IAA24) Length = 902 Score = 46.6 bits (109), Expect = 2e-05 Identities = 19/26 (73%), Positives = 22/26 (84%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K +NSELWHACAGPLVCLP +G+ V Sbjct: 48 KPVINSELWHACAGPLVCLPQVGSLV 73
>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)| Length = 1086 Score = 45.8 bits (107), Expect = 4e-05 Identities = 19/27 (70%), Positives = 23/27 (85%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRVV 423 KK +NS+LWHACAGPLV LP +G+ VV Sbjct: 17 KKPINSQLWHACAGPLVSLPPVGSLVV 43
>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)| (Protein BIPOSTO) (Auxin-responsive protein IAA21/IAA23/IAA25) Length = 1164 Score = 44.3 bits (103), Expect = 1e-04 Identities = 17/27 (62%), Positives = 23/27 (85%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRVV 423 ++++NSELWHACAGPL+ LP G+ VV Sbjct: 18 RRNINSELWHACAGPLISLPPAGSLVV 44
>ARFD_ARATH (Q9ZTX9) Auxin response factor 4| Length = 788 Score = 42.4 bits (98), Expect = 4e-04 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = +1 Query: 349 SLNSELWHACAGPLVCLPTLGTRVV 423 S+ SELWHACAGPL CLP G VV Sbjct: 61 SIYSELWHACAGPLTCLPKKGNVVV 85
>ARFA_ARATH (Q8L7G0) Auxin response factor 1| Length = 665 Score = 38.1 bits (87), Expect = 0.008 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +1 Query: 349 SLNSELWHACAGPLVCLPTLGTRV 420 +L ELWHACAGPLV LP G RV Sbjct: 18 ALCRELWHACAGPLVTLPREGERV 41
>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)| Length = 608 Score = 36.2 bits (82), Expect = 0.032 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +1 Query: 361 ELWHACAGPLVCLPTLGTRVV 423 ELWHACAGPL+ LP G+ V+ Sbjct: 54 ELWHACAGPLISLPKRGSLVL 74
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10| Length = 693 Score = 36.2 bits (82), Expect = 0.032 Identities = 14/26 (53%), Positives = 21/26 (80%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 +KSL+ +LWHACAG +V +P+L + V Sbjct: 4 EKSLDPQLWHACAGSMVQIPSLNSTV 29
>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)| Length = 859 Score = 35.0 bits (79), Expect = 0.072 Identities = 15/24 (62%), Positives = 17/24 (70%) Frame = +1 Query: 349 SLNSELWHACAGPLVCLPTLGTRV 420 +L ELWHACAGPLV +P RV Sbjct: 57 ALYRELWHACAGPLVTVPRQDDRV 80
>ARFP_ARATH (Q93YR9) Auxin response factor 16| Length = 670 Score = 33.9 bits (76), Expect = 0.16 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 +K L+ +LWHACAG +V +P + ++V Sbjct: 13 EKGLDPQLWHACAGGMVRMPPMNSKV 38
>ARFK_ARATH (Q9ZPY6) Auxin response factor 11| Length = 601 Score = 33.9 bits (76), Expect = 0.16 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +1 Query: 352 LNSELWHACAGPLVCLPTLGTRV 420 L +ELW ACAGPLV +P G RV Sbjct: 18 LYTELWKACAGPLVEVPRYGERV 40
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 32.7 bits (73), Expect = 0.36 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 299 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFSSHPAVI 153 PP P + SP+P T+P ++P PP + A++ P+L ++P V+ Sbjct: 197 PPPPPPPVKAPSPSPATQPPTKQPPPPPR-AKKSPLLPPPPPVAYPPVM 244
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 31.6 bits (70), Expect = 0.79 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Frame = -2 Query: 395 QTSGPAQACHSSELRLFFXXXXXXXXXXXXGWPPRLAPEEELISPAPVTRP-----ENEK 231 + SGPA SSE RL PP P L SP PV P E ++ Sbjct: 46 KNSGPA----SSEPRLTLAPVGPRAAVS----PPSERPRLVLSSPRPVLAPLSIAGEQKR 97 Query: 230 PTPPHKSARRY----PILKSAAFSSHP 162 P PPH S R ++ SAA +S P Sbjct: 98 PPPPHSSNRAAKSVGQLVVSAAAASKP 124
>ARFW_ARATH (Q9LP07) Putative auxin response factor 23| Length = 222 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG +V Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKV 46
>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15| Length = 593 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG +V Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKV 46
>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14| Length = 605 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG +V Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKV 46
>ARFL_ARATH (Q9XID4) Putative auxin response factor 12| Length = 593 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG +V Sbjct: 21 KSYVYEQLWKLCAGPLCDIPKLGEKV 46
>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22| Length = 598 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG ++ Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGEKI 46
>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21| Length = 606 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG V Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGENV 46
>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20| Length = 606 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW CAGPL +P LG V Sbjct: 21 KSYMYEQLWKLCAGPLCDIPKLGENV 46
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = -2 Query: 296 PRLAPEEELISPAPVTRPENEKPTP---PHKSARR 201 P E + PAP TRP N PTP P K+A R Sbjct: 116 PARPSTESVAHPAPPTRPANPTPTPTSSPPKTAAR 150
>ARFR_ARATH (Q9C5W9) Auxin response factor 18| Length = 602 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +1 Query: 352 LNSELWHACAGPLVCLPTLGTRV 420 L +ELW CAGPLV +P RV Sbjct: 22 LYTELWKVCAGPLVEVPRAQERV 44
>ARFM_ARATH (Q9FX25) Putative auxin response factor 13| Length = 623 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 343 KKSLNSELWHACAGPLVCLPTLGTRV 420 K + +LW+ CAGPL LP G +V Sbjct: 21 KTYMYEKLWNICAGPLCVLPKPGEKV 46
>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase| Length = 486 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = -2 Query: 299 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYPILKSAAFS 171 PP P P P+ RP +P P RR + AAF+ Sbjct: 257 PPLPVPSPGAAPPDPLVRPGRPRPQAPDGLRRRVAMASGAAFT 299
>ARFI_ARATH (Q9XED8) Auxin response factor 9| Length = 638 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 352 LNSELWHACAGPLVCLPTLGTRV 420 L ELW CAGPLV +P RV Sbjct: 9 LYDELWKLCAGPLVDVPQAQERV 31
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 Query: 290 LAPEEELISPAPVTRPENEKPTP 222 L PEE L+ P P PE E P P Sbjct: 54 LEPEELLLEPEPEPEPEEEPPRP 76
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -2 Query: 290 LAPEEELISPAPVTRPENEKPTP 222 L PEE L+ P P PE E P P Sbjct: 54 LEPEELLLEPEPEPEPEEEPPRP 76
>MMPL2_MYCTU (Q11171) Putative membrane protein mmpL2| Length = 968 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 225 APSQIRPAVPHPQIRRILISSGSHPSS 145 A +RP P +R +L+ SG HPS+ Sbjct: 937 ASQMLRPFAPRRLVRALLLPSGQHPSA 963
>GPI8_PONPY (Q5R6L8) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 189 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 281 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_PIG (Q4KRV1) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 189 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 281 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_HUMAN (Q92643) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) (hGPI8) Length = 395 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 189 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 281 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>GPI8_BOVIN (Q3MHZ7) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 189 EDGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 281 +D PPGGF+ G W +VF+ YG + +F Sbjct: 362 KDWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395
>REC8L_HUMAN (O95072) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)| Length = 547 Score = 28.1 bits (61), Expect = 8.8 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Frame = -2 Query: 410 PRVGRQTSGPAQACHSSELRLFFXXXXXXXXXXXXGWPP-----RLAPEEELISPAPVTR 246 P + G +A ELRL GW P + P EEL PAP + Sbjct: 241 PPAPAEVEGIGEALGPEELRL-------------TGWEPGALLMEVTPPEELRLPAPPS- 286 Query: 245 PENEKPTPPHKSARR 201 PE P PP RR Sbjct: 287 PERRPPVPPPPRRRR 301
>NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75) (NGM-75)| Length = 309 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -2 Query: 299 PPRLAPEEELISPAPVTRPENEKPTPPHKSARRYP 195 PP P E P P +P +EKP P H+ P Sbjct: 156 PPEYQPPHE--KPPPEYQPPHEKPPPEHQPPHEKP 188
>GPI8_MOUSE (Q9CXY9) GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI| transamidase) (Phosphatidylinositol-glycan biosynthesis, class K protein) (PIG-K) Length = 395 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 192 DGVPPGGFVRGRW---FLVFWSCYGCGGDELLF 281 D PPGGF+ G W +VF+ YG + +F Sbjct: 363 DWHPPGGFILGLWALIIMVFFKTYGIKHMKFIF 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,204,045 Number of Sequences: 219361 Number of extensions: 391593 Number of successful extensions: 2186 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2178 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
