Clone Name | bastl19h10 |
---|---|
Clone Library Name | barley_pub |
>dbj|D13472.2|BLYINOPP Hordeum vulgare mRNA for vacuolar membrane proton-translocating inorganic pyrophosphatase, complete cds Length = 2649 Score = 67.9 bits (34), Expect = 7e-09 Identities = 58/62 (93%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 68 cgtcggcctgccagcctgacagcc-tggcgatcctcggggagct-gggacgga-atcctc 124 |||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||| Sbjct: 1 cgtcggcctgccagccagacagccatggcgatcctcggggagctcgggacggagatcctc 60 Query: 125 at 126 || Sbjct: 61 at 62
>gb|AY860110.1| Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence Length = 11188 Score = 44.1 bits (22), Expect = 0.095 Identities = 25/26 (96%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccgtccggtc 53 ||||||||| |||||||||||||||| Sbjct: 2374 cccaccccggccgccgccgtccggtc 2349
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12 Contains three novel genes, the 3' end of the LHX2 gene for LIM homeobox protein 2 and four CpG islands, complete sequence Length = 221887 Score = 44.1 bits (22), Expect = 0.095 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccgtcc 49 |||||||||||||||||||||| Sbjct: 18119 cccaccccgcccgccgccgtcc 18098
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence Length = 177555 Score = 44.1 bits (22), Expect = 0.095 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 cccaccccgcccgccgccgtcc 49 |||||||||||||||||||||| Sbjct: 33152 cccaccccgcccgccgccgtcc 33173
>gb|AY022083.1| Oryza sativa microsatellite MRG4408 containing (TC)X15, genomic sequence Length = 230 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tcccaccccgcccgccgccg 46 |||||||||||||||||||| Sbjct: 227 tcccaccccgcccgccgccg 208
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tcccaccccgcccgccgccg 46 |||||||||||||||||||| Sbjct: 14658 tcccaccccgcccgccgccg 14677
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence Length = 154505 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tcccaccccgcccgccgccg 46 |||||||||||||||||||| Sbjct: 10942 tcccaccccgcccgccgccg 10923
>gb|AC153857.7| Mus musculus 6 BAC RP23-158G17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215780 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 cccccctcatcccaccccgc 37 |||||||||||||||||||| Sbjct: 101292 cccccctcatcccaccccgc 101311
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tcccaccccgcccgccgccg 46 |||||||||||||||||||| Sbjct: 12489517 tcccaccccgcccgccgccg 12489498
>gb|AC025770.7| Homo sapiens chromosome 5 clone CTD-2187O10, complete sequence Length = 113182 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 atcctcggggagctgggacg 116 |||||||||||||||||||| Sbjct: 45165 atcctcggggagctgggacg 45184
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ggtttcgtcggcctgccagc 82 |||||||||||||||||||| Sbjct: 2831217 ggtttcgtcggcctgccagc 2831198 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tgacagcctggcgatcctcg 103 |||||||||||||||||||| Sbjct: 641994 tgacagcctggcgatcctcg 642013
>emb|AL928581.8| Mouse DNA sequence from clone RP23-318H20 on chromosome 2, complete sequence Length = 178735 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 cccccctcatcccaccccgcccgc 41 |||||| ||||||||||||||||| Sbjct: 81012 ccccccccatcccaccccgcccgc 80989
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tcccaccccgcccgccgccg 46 |||||||||||||||||||| Sbjct: 12496857 tcccaccccgcccgccgccg 12496838
>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21, complete sequence Length = 128493 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 atcccaccccgcccgccgc 44 ||||||||||||||||||| Sbjct: 85397 atcccaccccgcccgccgc 85415
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cccaccccgcccgccgccg 46 ||||||||||||||||||| Sbjct: 2318393 cccaccccgcccgccgccg 2318411 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 323518 ccccgcccgccgccgtccg 323500
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccgtccg 50 |||||| |||||||||||||||| Sbjct: 261668 cccaccacgcccgccgccgtccg 261646
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccg 46 ||||||||||||||||||| Sbjct: 1185464 cccaccccgcccgccgccg 1185446 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 1054539 ccccgcccgccgccgtccg 1054521
>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence Length = 197295 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 tccgtcccccctcatcccacccc 35 ||||||||||||| ||||||||| Sbjct: 165577 tccgtcccccctcctcccacccc 165599
>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence Length = 249021 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 120715 tcccccctcatcccacccc 120697
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccg 46 ||||||||||||||||||| Sbjct: 1066948 cccaccccgcccgccgccg 1066930 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 935539 ccccgcccgccgccgtccg 935521
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 211783 ccccgcccgccgccgtccg 211765
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 accccgcccgccgccgtcc 49 ||||||||||||||||||| Sbjct: 171232 accccgcccgccgccgtcc 171250
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 164098 ccccgcccgccgccgtccg 164116
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 13976 ccccgcccgccgccgtccg 13958
>gb|BC064721.1| Xenopus tropicalis hypothetical protein MGC75959, mRNA (cDNA clone MGC:75959 IMAGE:5384094), complete cds Length = 4846 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 104 gggagctgggacggaatcctcat 126 |||||||| |||||||||||||| Sbjct: 81 gggagctgagacggaatcctcat 103
>gb|AC098865.2| Homo sapiens BAC clone RP11-374O3 from 4, complete sequence Length = 54348 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 52877 tcccccctcatcccacccc 52859
>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence Length = 148673 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 529 tcccccctcatcccacccc 511
>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence Length = 209211 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 tccgtcccccctcatcccacccc 35 |||||||||||||| |||||||| Sbjct: 10596 tccgtcccccctcaccccacccc 10618
>gb|AY296911.1| Triticum aestivum vacuolar proton-inorganic pyrophosphatase mRNA, complete cds Length = 2671 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 tggcgatcctcggggagct 110 ||||||||||||||||||| Sbjct: 32 tggcgatcctcggggagct 50
>dbj|AK075611.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:0710008A09 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, full insert sequence Length = 2476 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 gtcccccctcatcccaccccgcc 38 ||||||||||| ||||||||||| Sbjct: 1120 gtcccccctcaccccaccccgcc 1142
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 atcccaccccgcccgccgc 44 ||||||||||||||||||| Sbjct: 6522735 atcccaccccgcccgccgc 6522753
>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete sequence Length = 197884 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 63385 tcccccctcatcccacccc 63367
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 accccgcccgccgccgtcc 49 ||||||||||||||||||| Sbjct: 4053628 accccgcccgccgccgtcc 4053610
>gb|AC009298.3| Homo sapiens BAC clone RP11-17I6 from 2, complete sequence Length = 165242 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 tcccaccccgcccgccgcc 45 ||||||||||||||||||| Sbjct: 103618 tcccaccccgcccgccgcc 103600
>ref|NM_204047.1| Xenopus tropicalis hypothetical protein MGC75959 (MGC75959), mRNA Length = 4846 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 104 gggagctgggacggaatcctcat 126 |||||||| |||||||||||||| Sbjct: 81 gggagctgagacggaatcctcat 103
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 cccaccccgcccgccgccg 46 ||||||||||||||||||| Sbjct: 5806820 cccaccccgcccgccgccg 5806802 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 cgcccgccgccgtccggtccgtc 57 ||||||| ||||||||||||||| Sbjct: 2100551 cgcccgctgccgtccggtccgtc 2100529
>emb|AJ340490.1|HSA340490 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WH19R Length = 702 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 ccccgcccgccgccgtccg 50 ||||||||||||||||||| Sbjct: 326 ccccgcccgccgccgtccg 344
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 ccgccgccgtccggtccgt 56 ||||||||||||||||||| Sbjct: 1713058 ccgccgccgtccggtccgt 1713040
>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete sequence Length = 173896 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 46723 tcccccctcatcccacccc 46705
>gb|U30788.1|RNU30788 Rattus norvegicus Tclone4 mRNA Length = 2026 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 gcctgacagcctggcgatc 99 ||||||||||||||||||| Sbjct: 1386 gcctgacagcctggcgatc 1404
>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete sequence Length = 187735 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 tcccccctcatcccacccc 35 ||||||||||||||||||| Sbjct: 86202 tcccccctcatcccacccc 86220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 755,337 Number of Sequences: 3902068 Number of extensions: 755337 Number of successful extensions: 62521 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61277 Number of HSP's gapped (non-prelim): 1243 length of query: 126 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 105 effective length of database: 17,151,101,840 effective search space: 1800865693200 effective search space used: 1800865693200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)