ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19h04 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 84.3 bits (207), Expect = 7e-17 Identities = 35/50 (70%), Positives = 47/50 (94%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 LRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+ Sbjct: 3 LRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKT 52 Score = 31.6 bits (70), Expect = 0.57 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 214 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 89 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 84.3 bits (207), Expect = 7e-17 Identities = 35/50 (70%), Positives = 47/50 (94%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 LRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+ Sbjct: 2 LRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKT 51 Score = 31.6 bits (70), Expect = 0.57 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 214 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 84.3 bits (207), Expect = 7e-17 Identities = 35/50 (70%), Positives = 47/50 (94%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 LRL+IKRK RS+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+ Sbjct: 2 LRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKT 51 Score = 31.6 bits (70), Expect = 0.57 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 214 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 82.0 bits (201), Expect = 4e-16 Identities = 34/50 (68%), Positives = 46/50 (92%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 LRL+IKRK S+RVKSVDLHPTEPW+LASLY+G++C+W+++TQT+VK+ Sbjct: 2 LRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKT 51 Score = 31.6 bits (70), Expect = 0.57 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 214 LE F S+ ++ + +HPT+P+IL S + +WD+ Sbjct: 88 LERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 127
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 74.3 bits (181), Expect = 8e-14 Identities = 32/50 (64%), Positives = 42/50 (84%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 LRL++KRK RS+RVK VDLHP E W+LA+LY+G + IW+Y+TQT+VKS Sbjct: 3 LRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKS 52 Score = 30.8 bits (68), Expect = 0.98 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVK 235 LE +F S+ ++S+ +HPT P++++S + +WD+ + +K Sbjct: 89 LERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMK 135
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 70.1 bits (170), Expect = 1e-12 Identities = 27/50 (54%), Positives = 41/50 (82%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 ++L+IK+ F+ RS+RVK +D HPTEPW+L +LYSG + +W+Y+TQ V+S Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS 50 Score = 29.3 bits (64), Expect = 2.8 Identities = 9/35 (25%), Positives = 23/35 (65%) Frame = +2 Query: 113 FAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 217 F + ++S+ +HPT+P++L+ T+ +W+++ Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 69.3 bits (168), Expect = 2e-12 Identities = 28/50 (56%), Positives = 40/50 (80%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 +RL+ +RK +ERVK+VD HPTEPW++AS Y+G + IW+Y TQT+V+S Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRS 51
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 64.3 bits (155), Expect = 8e-11 Identities = 28/49 (57%), Positives = 38/49 (77%) Frame = +2 Query: 89 LRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVK 235 L+L+IKR+ RS+RVK VDLHP EPW+L +LY+G + I +Y+ Q MVK Sbjct: 3 LKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVK 51 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/41 (26%), Positives = 23/41 (56%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 217 LE F S+ ++ + +HPT+P +L S + +W+++ Sbjct: 89 LEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWE 129
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/41 (46%), Positives = 28/41 (68%) Frame = +2 Query: 110 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 232 KF +S RVK + HP PWIL SL++G + +WDY+ T++ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLI 44 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 Query: 134 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 232 +++ H PWIL++ T+ +W++Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/41 (46%), Positives = 28/41 (68%) Frame = +2 Query: 110 KFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 232 KF +S RVK + HP PWIL SL++G + +WDY+ T++ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLI 44 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 Query: 134 VKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 232 +++ H PWIL++ T+ +W++Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 49.3 bits (116), Expect = 3e-06 Identities = 17/46 (36%), Positives = 31/46 (67%) Frame = +2 Query: 95 LEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMV 232 +++ KF +S R K + HP+ PW+L +L+S T+ +WDY+ T++ Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLL 46
>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] (Fragment) Length = 35 Score = 38.5 bits (88), Expect = 0.005 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +2 Query: 110 KFAQRSERVKSVDLHPTEPWILASLYSGTL 199 KF +S RVK + HP PWIL SL++G + Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVI 33
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 35.0 bits (79), Expect = 0.052 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +2 Query: 119 QRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 QR E ++SV LHPT P + A G L +W++ T+++S Sbjct: 995 QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNFD-GTLIRS 1033
>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15| Length = 341 Score = 31.6 bits (70), Expect = 0.57 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +2 Query: 98 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWD 211 +I +F +RVKSV +P + +++ + G++CIWD Sbjct: 230 KILHEFTAHKKRVKSV--YPVDDYLITASSDGSVCIWD 265
>KAD_METCA (Q606F1) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 214 Score = 30.0 bits (66), Expect = 1.7 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 91 QVGDQEEVRAAVGEGQVGGSAPHRAMDPGELVLGDSLHLGL-------PDADHGEII 240 Q+ + +RAAV EG G + MD G+LV DS+ LGL PD +G ++ Sbjct: 28 QISTGDMLRAAVREGTPLGMEAKKIMDAGQLV-SDSIILGLIKERIAAPDCANGFLL 83
>YC47_SCHPO (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III| Length = 902 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 98 EIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVKS 238 +I R+ S R+ S D T W++ + GT+ WD T ++ S Sbjct: 563 KIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDS 609
>WDR23_MOUSE (Q91VU6) WD-repeat protein 23| Length = 549 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 101 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 217 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23| Length = 546 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 101 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQ 217 I +K V+ V HP E I++S + G L +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4| Length = 395 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 101 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDYQTQTMVK 235 +K + + V P +ILAS + TL +WDYQ ++K Sbjct: 267 VKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLK 311
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 125 SERVKSVDLHPTEPWILAS 181 S R+ D HPT PW++AS Sbjct: 403 SSRISDFDWHPTLPWVIAS 421
>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9| Length = 571 Score = 28.9 bits (63), Expect = 3.7 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 101 IKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWDY 214 + R+ + V+ D HPTE I++S + G +W + Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 149 LHPTEPWILASLYSGTLCIWDYQTQTMV 232 LH T P+++A + TL +WD Q +V Sbjct: 778 LHCTGPYVMALTAAATLSVWDVHRQVVV 805
>ZNF16_HUMAN (P17020) Zinc finger protein 16 (Zinc finger protein KOX9)| Length = 682 Score = 28.5 bits (62), Expect = 4.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -2 Query: 233 SPWSASGSPRCRESPSTSSPGSMA 162 SPW+ + R R++P+ + PGS A Sbjct: 21 SPWTPAAQARVRDAPAVTHPGSAA 44
>TBX6_MOUSE (P70327) T-box transcription factor TBX6 (T-box protein 6)| Length = 540 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 133 GQVGGSAPHRAMDPGELVLGDSLHLGLP 216 G + S P +A PG+L+L LH+G P Sbjct: 317 GDIRDSDPEQAPTPGKLLLPQLLHVGAP 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,050,996 Number of Sequences: 219361 Number of extensions: 309445 Number of successful extensions: 1298 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1298 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
