ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 3e-40
2ref|XM_464583.1| Oryza sativa (japonica cultivar-group), mRNA 157 2e-35
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 6e-20
4dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 105 6e-20
5ref|XM_464582.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-16
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
7dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
8ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79... 66 5e-08
9gb|AY090955.1| Arabidopsis thaliana putative coatomer protein co... 66 5e-08
10ref|XM_422637.1| PREDICTED: Gallus gallus similar to beta prime ... 46 0.050
11emb|BX006538.1|CNS08D7I Single read from an extremity of a full-... 46 0.050
12gb|DQ363460.1| Ictalurus punctatus clone C145DB06 hypothetical p... 46 0.050
13ref|XM_318012.2| Anopheles gambiae str. PEST ENSANGP00000010744 ... 46 0.050

>dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full
           insert sequence
          Length = 3391

 Score =  172 bits (87), Expect = 3e-40
 Identities = 135/151 (89%)
 Strand = Plus / Plus

                                                                       
Query: 90  tcaggttggagatcaagaggaagttcgcgcagcggtcggagagggtcaagtcggtggatc 149
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 187 tcaggttggagatcaagaggaagtttgcgcaacggtcggagagggtcaagtcggtggatc 246

                                                                       
Query: 150 tgcaccccaccgagccatggatcctggcgagcttgtactcggggactctctgcatctggg 209
           |||||||||| ||||||||||||||| ||||  | ||||| ||||   | ||||||||||
Sbjct: 247 tgcaccccacggagccatggatcctgtcgagtctttactccgggagcgtgtgcatctggg 306

                                          
Query: 210 actaccagacgcagaccatggtgaaatcatt 240
           |||| ||| ||||||| |||||||| |||||
Sbjct: 307 actatcagtcgcagacaatggtgaagtcatt 337



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>ref|XM_464583.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2733

 Score =  157 bits (79), Expect = 2e-35
 Identities = 133/151 (88%)
 Strand = Plus / Plus

                                                                       
Query: 90  tcaggttggagatcaagaggaagttcgcgcagcggtcggagagggtcaagtcggtggatc 149
           |||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 8   tcaggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtccgtggatc 67

                                                                       
Query: 150 tgcaccccaccgagccatggatcctggcgagcttgtactcggggactctctgcatctggg 209
           |||| || ||||||||||||||  || ||||  |||| || ||||   ||||||||||| 
Sbjct: 68  tgcatccgaccgagccatggattttgtcgagtctgtattcagggagcgtctgcatctgga 127

                                          
Query: 210 actaccagacgcagaccatggtgaaatcatt 240
           |||||||||||||||| ||||||||||||||
Sbjct: 128 actaccagacgcagacgatggtgaaatcatt 158



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 6e-20
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                           
Query: 105     agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
               |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2328167 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 2328108

                    
Query: 165     catgg 169
               |||||
Sbjct: 2328107 catgg 2328103



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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score =  105 bits (53), Expect = 6e-20
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                         
Query: 105   agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
             |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 49968 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 49909

                  
Query: 165   catgg 169
             |||||
Sbjct: 49908 catgg 49904



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>ref|XM_464582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2628

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 105 agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
           |||||||| |||||||| |||||||||||| |||||| ||||||||||| || |||||||
Sbjct: 21  agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 80

                                                                      
Query: 165 catggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacgcag 223
           |||||||  || ||||  |||| || ||||   | ||||||||| ||||||||||||||
Sbjct: 81  catggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 139



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 105     agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
               |||||||| |||||||| ||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 6140426 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 6140367

                    
Query: 165     catgg 169
               |||||
Sbjct: 6140366 catgg 6140362



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                           
Query: 105     agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
               |||||||| |||||||| |||||||||||| |||||| ||||||||||| || |||||||
Sbjct: 6127729 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 6127670

                    
Query: 165     catgg 169
               |||||
Sbjct: 6127669 catgg 6127665



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 198     tctgcatctgggactaccagacgcag 223
               ||||||||||| ||||||||||||||
Sbjct: 6140221 tctgcatctggaactaccagacgcag 6140196



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 200     tgcatctgggactaccagacgcag 223
               ||||||||| ||||||||||||||
Sbjct: 6127523 tgcatctggaactaccagacgcag 6127500



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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_A02
          Length = 175153

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                          
Query: 105    agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
              |||||||| |||||||| ||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 105908 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 105849

                   
Query: 165    catgg 169
              |||||
Sbjct: 105848 catgg 105844



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 105   agaggaagttcgcgcagcggtcggagagggtcaagtcggtggatctgcaccccaccgagc 164
             |||||||| |||||||| |||||||||||| |||||| ||||||||||| || |||||||
Sbjct: 93211 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 93152

                  
Query: 165   catgg 169
             |||||
Sbjct: 93151 catgg 93147



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 198    tctgcatctgggactaccagacgcag 223
              ||||||||||| ||||||||||||||
Sbjct: 105703 tctgcatctggaactaccagacgcag 105678



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 200   tgcatctgggactaccagacgcag 223
             ||||||||| ||||||||||||||
Sbjct: 93005 tgcatctggaactaccagacgcag 92982



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>ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79990 mRNA, complete
           cds
          Length = 3179

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 gagccatggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacg 220
           ||||||||||||||||| || ||||| || || ||||| ||||||||| | |||||||| 
Sbjct: 206 gagccatggatcctggcaagtttgtattccggaactctgtgcatctggaattaccagacc 265

                            
Query: 221 cagaccatggtgaaatc 237
           ||||| ||||| |||||
Sbjct: 266 cagacaatggtaaaatc 282



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>gb|AY090955.1| Arabidopsis thaliana putative coatomer protein complex, subunit
           beta 2 (beta prime) (At1g79990) mRNA, complete cds
          Length = 3162

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 gagccatggatcctggcgagcttgtactcggggactctctgcatctgggactaccagacg 220
           ||||||||||||||||| || ||||| || || ||||| ||||||||| | |||||||| 
Sbjct: 206 gagccatggatcctggcaagtttgtattccggaactctgtgcatctggaattaccagacc 265

                            
Query: 221 cagaccatggtgaaatc 237
           ||||| ||||| |||||
Sbjct: 266 cagacaatggtaaaatc 282



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>ref|XM_422637.1| PREDICTED: Gallus gallus similar to beta prime cop (LOC424823),
           mRNA
          Length = 3274

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 143 gtggatctgcaccccaccgagccatggatcctggc 177
           ||||| ||||||||||| ||||||||||| |||||
Sbjct: 346 gtggacctgcaccccacagagccatggatgctggc 380



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>emb|BX006538.1|CNS08D7I Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA11AC02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 970

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 137 aagtcggtggatctgcaccccaccgagccatggat 171
           |||||||| ||||||||||| || |||||||||||
Sbjct: 161 aagtcggtagatctgcacccgacggagccatggat 195



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>gb|DQ363460.1| Ictalurus punctatus clone C145DB06 hypothetical protein mRNA,
           partial cds
          Length = 867

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 143 gtggatctgcaccccaccgagccatggatcctggc 177
           |||||||| || ||||||||||||||||| |||||
Sbjct: 61  gtggatctccatcccaccgagccatggatgctggc 95



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>ref|XM_318012.2| Anopheles gambiae str. PEST ENSANGP00000010744
           (ENSANGG00000008255), partial mRNA
          Length = 2466

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 137 aagtcggtggatctgcaccccaccgagccatggat 171
           |||||||| ||||||||||| || |||||||||||
Sbjct: 52  aagtcggtagatctgcacccgacggagccatggat 86


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 960,230
Number of Sequences: 3902068
Number of extensions: 960230
Number of successful extensions: 15862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15819
Number of HSP's gapped (non-prelim): 41
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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