ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.008
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.008
3dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.008
4dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.008
5dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ... 44 0.13
6dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, com... 44 0.13
7ref|XM_472252.1| Oryza sativa (japonica cultivar-group), predic... 42 0.50
8gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, comple... 42 0.50
9emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 42 0.50
10ref|NG_004818.1| Gallus gallus cadherin-related neuronal recepto... 42 0.50
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.50
12emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 42 0.50
13gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.0
14gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se... 40 2.0
15gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r... 40 2.0
16gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.0
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.0
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.0
20gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.8
21ref|XM_509912.1| PREDICTED: Pan troglodytes similar to mirror-im... 38 7.8
22gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 7.8
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.8
24ref|XM_883536.1| Leishmania major strain Friedlin hypothetical p... 38 7.8
25emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 38 7.8
26gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 38 7.8
27gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 7.8
28gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.8
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 7.8
30gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATP... 38 7.8
31tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 38 7.8
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
34dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 38 7.8
35dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 38 7.8
36dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
37dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
38emb|AL121857.6|CNS01DSO Human chromosome 14 DNA sequence BAC R-1... 38 7.8
39gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 7.8
40emb|AL079304.3|CNS00M8L Human chromosome 14 DNA sequence BAC R-5... 38 7.8
41gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downst... 38 7.8 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 134 gccatgtcgcagccgctcgtcgtgaaga 161
           |||||| |||||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaaga 254
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 134     gccatgtcgcagccgctcgtcgtgaaga 161
               |||||| |||||||||||||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaaga 5484577
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 134    gccatgtcgcagccgctcgtcgtgaaga 161
              |||||| |||||||||||||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaaga 118558
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 134 gccatgtcgcagccgctcgtcgtgaaga 161
           |||||| |||||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaaga 254
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>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 32  ctcgcgggagctctcgcgccgc 53
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 32  ctcgcgggagctctcgcgccgc 53
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  cgccgccccgctccgccgccg 68
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160
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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     ccccgctccgccgccgttctc 73
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   cgccgccccgctccgccgccg 68
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886
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>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    ccccgctccgccgccgttctc 73
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 48       cgccgccccgctccgccgccg 68
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     cgccgccccgctccgccgccg 68
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139
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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     gctccgccgccgttctcgcggcat 80
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322
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>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tcgcgccgccccgctccgcc 64
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295
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>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    gcgccgccccgctccgccgc 66
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 47      gcgccgccccgctccgccgc 66
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 57      gctccgccgccgttctcgcggcat 80
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      gccgccccgctccgccgccg 68
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 57      gctccgccgccgttctcgcggcat 80
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653
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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    cgcgccgccccgctccgcc 64
             |||||||||||||||||||
Sbjct: 20735 cgcgccgccccgctccgcc 20753
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>ref|XM_509912.1| PREDICTED: Pan troglodytes similar to mirror-image polydactyly 1;
            mirror-image polydactyly gene 1 (LOC452868), mRNA
          Length = 1970

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 46   cgcgccgccccgctccgccgccg 68
            |||||||||||||||| ||||||
Sbjct: 1218 cgcgccgccccgctcctccgccg 1240
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 105     cgcgcgcgcatcgctccgccgca 127
               ||||||||||||||| |||||||
Sbjct: 2451026 cgcgcgcgcatcgcttcgccgca 2451004
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 46      cgcgccgccccgctccgcc 64
               |||||||||||||||||||
Sbjct: 1795096 cgcgccgccccgctccgcc 1795114
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>ref|XM_883536.1| Leishmania major strain Friedlin hypothetical protein (L1156.06)
            partial mRNA
          Length = 7476

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 109  cgcgcatcgctccgccgcagcag 131
            |||||||||||| ||||||||||
Sbjct: 4459 cgcgcatcgctcggccgcagcag 4437
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 109    cgcgcatcgctccgccgcagcag 131
              |||||||||||| ||||||||||
Sbjct: 222028 cgcgcatcgctcggccgcagcag 222050
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 95      gcgcacaatccgcgcgcgc 113
               |||||||||||||||||||
Sbjct: 1614243 gcgcacaatccgcgcgcgc 1614261
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 35      gcgggagctctcgcgccgc 53
               |||||||||||||||||||
Sbjct: 1269677 gcgggagctctcgcgccgc 1269659
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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1004C08,
             complete sequence
          Length = 133090

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    cgcgccgccccgctccgcc 64
             |||||||||||||||||||
Sbjct: 39266 cgcgccgccccgctccgcc 39248
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     gcgcatcgctccgccgcag 128
               |||||||||||||||||||
Sbjct: 3602016 gcgcatcgctccgccgcag 3601998



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    gcgcatcgctccgccgcag 128
              |||||||||||||||||||
Sbjct: 436753 gcgcatcgctccgccgcag 436771
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>gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATPase (meaB), putative
            isopropylmalate dehydratase (leuD), tryptophanyl-tRNA
            synthetase (trpS), and ArsR-type transcriptional
            regulator genes, complete cds; and unknown genes
          Length = 8217

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   cgccgccccgctccgccgc 66
            |||||||||||||||||||
Sbjct: 5321 cgccgccccgctccgccgc 5303
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 46     cgcgccgccccgctccgccgccg 68
              |||| ||||||||||||||||||
Sbjct: 140187 cgcggcgccccgctccgccgccg 140209



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 46     cgcgccgccccgctccgccgccg 68
              |||| ||||||||||||||||||
Sbjct: 104415 cgcggcgccccgctccgccgccg 104393
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 46       cgcgccgccccgctccgccgccg 68
                |||||| ||||||||||||||||
Sbjct: 26474787 cgcgcctccccgctccgccgccg 26474765
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 46      cgcgccgccccgctccgcc 64
               |||||||||||||||||||
Sbjct: 1795094 cgcgccgccccgctccgcc 1795112
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 47      gcgccgccccgctccgccg 65
               |||||||||||||||||||
Sbjct: 3550340 gcgccgccccgctccgccg 3550322
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      gacaaggactcgcgggagc 42
               |||||||||||||||||||
Sbjct: 1833241 gacaaggactcgcgggagc 1833259
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0709F06
          Length = 170964

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    cgcgccgccccgctccgccgccg 68
             |||||| ||||||||||||||||
Sbjct: 86826 cgcgcctccccgctccgccgccg 86804
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>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0460H04
          Length = 166490

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 46   cgcgccgccccgctccgccgccg 68
            |||||| ||||||||||||||||
Sbjct: 8440 cgcgcctccccgctccgccgccg 8418
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>emb|AL121857.6|CNS01DSO Human chromosome 14 DNA sequence BAC R-158A24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171757

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 46    cgcgccgccccgctccgccgccg 68
             |||||||||||||||| ||||||
Sbjct: 69966 cgcgccgccccgctcctccgccg 69988
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 49      gccgccccgctccgccgcc 67
               |||||||||||||||||||
Sbjct: 2261154 gccgccccgctccgccgcc 2261136
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>emb|AL079304.3|CNS00M8L Human chromosome 14 DNA sequence BAC R-537P22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162573

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 46     cgcgccgccccgctccgccgccg 68
              |||||||||||||||| ||||||
Sbjct: 117561 cgcgccgccccgctcctccgccg 117583
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>gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downsteam sequences
          Length = 15141

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 46   cgcgccgccccgctccgccgccg 68
            |||| ||||||||||||||||||
Sbjct: 8611 cgcggcgccccgctccgccgccg 8633


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 686,077
Number of Sequences: 3902068
Number of extensions: 686077
Number of successful extensions: 54639
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52768
Number of HSP's gapped (non-prelim): 1871
length of query: 161
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 139
effective length of database: 17,147,199,772
effective search space: 2383460768308
effective search space used: 2383460768308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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