ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19g09 |
|---|---|
| Clone Library Name | barley_pub |
>TNPO3_MOUSE (Q6P2B1) Transportin 3| Length = 923 Score = 35.4 bits (80), Expect = 0.055 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = +2 Query: 89 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFATQMLRR 268 AV AL H PS + A+ WL LQRS AW V+ +FA Q ++ Sbjct: 14 AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69 Query: 269 MIQSPDY 289 IQ+ Y Sbjct: 70 KIQTSFY 76
>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)| Length = 975 Score = 35.4 bits (80), Expect = 0.055 Identities = 23/67 (34%), Positives = 30/67 (44%) Frame = +2 Query: 89 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFATQMLRR 268 AV AL H PS + A+ WL LQRS AW V+ +FA Q ++ Sbjct: 14 AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69 Query: 269 MIQSPDY 289 IQ+ Y Sbjct: 70 KIQTSFY 76
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 32.3 bits (72), Expect = 0.46 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI---PPH 128 P APT+ PP R SP H R + P P + P + PPH Sbjct: 51 PPSAPTTTPPSRGHVPSPRHAPPRHAYPPPSHGHLPPSVGGPPPH 95
>AROC_METKA (Q8TXN1) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 386 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 376 REQPGRGKAETARCDRERVEELRGVVQERVVG 281 R +PG+ T R +R+RVE L GV + R +G Sbjct: 45 RRRPGQSGVSTPRSERDRVEILSGVHEGRTLG 76
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTSPSHRTS-RLSSPRPCTHLITPRIPPHV*PPT 143 PTH P+ +PP + T P + S + P P T+ TP+ PP PPT Sbjct: 180 PTHTPSPKPP-TSKPTPPVYTPSPKPPKPSPPTYTPTPK-PPATKPPT 225 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 143 PT+ P+ +PP + T P+ + P P + +P+ PP PPT Sbjct: 115 PTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPSPK-PPVTKPPT 160 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTS-PSHRTSRLSSPRPCTHLITPRIPPHV*PP 140 PT+ PT +PP + TS P+H +P P H T + P PP Sbjct: 210 PTYTPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPP 256
>IDI2_CHLCH (Q3AQM4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 357 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +2 Query: 44 MDVAESPDIQAQLAAAVHALNHASHPSARLAA-NQWLLGLQ 163 MDVA+S + AQLAA+ L HA H A QWL L+ Sbjct: 295 MDVAKSLAMGAQLAASARHLLHALHAGTLTATIEQWLNDLK 335
>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)| Length = 1826 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTSPSHRTSRLSSPRP 92 PT P +PPG Q+ SP L +P P Sbjct: 1613 PTAVPAEEPPGPQQLVSPGRERPDLEAPAP 1642
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = +2 Query: 80 LAAAVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFATQM 259 L +A+ L + +L AN +L Q+SP AW D S++ FA Q Sbjct: 4 LLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDD---SSIEAKLFAAQT 60 Query: 260 LRRMI 274 LR+ I Sbjct: 61 LRQKI 65
>KAR9_YEAST (P32526) Karyogamy protein KAR9 (Cortical protein KAR9)| Length = 644 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +3 Query: 30 PGRQRWTSPSHRTSRLSSPRPCTHLITPR 116 P Q W + R +RL P P + L++PR Sbjct: 606 PNSQVWVPSTRRRTRLRPPTPLSQLLSPR 634
>AROC_METTH (O26843) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 374 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 376 REQPGRGKAETARCDRERVEELRGVVQERVVG 281 R +PG G T R + +RVE L G+ + R G Sbjct: 54 RRRPGTGALTTPRAESDRVEILSGIFRGRTDG 85
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +3 Query: 3 PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 143 P+HAP S P R + P TS L P P + P PP+ Sbjct: 526 PSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAPPS 572
>REN3A_HUMAN (Q9H1J1) Regulator of nonsense transcripts 3A (Nonsense mRNA| reducing factor 3A) (Up-frameshift suppressor 3 homolog A) (hUpf3) Length = 476 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 415 RAERQRREGQAD-LREQPGRGKAETARCDRERVEELRGVVQERV 287 R ER+RRE + LRE+ R + E RC ++ ++ + + ++ V Sbjct: 236 REERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEV 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,191,944 Number of Sequences: 219361 Number of extensions: 659751 Number of successful extensions: 2138 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2133 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
