ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
4gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 46 0.092
5gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.36
6emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
7emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.4
8gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric s... 42 1.4
9gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, comp... 42 1.4
10dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
11dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.4
12ref|XM_473266.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
13gb|BC053136.1| Danio rerio zgc:77398, mRNA (cDNA clone IMAGE:678... 40 5.7
14gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.7
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.7
16emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
17gb|BC065604.1| Danio rerio zgc:77398, mRNA (cDNA clone MGC:77398... 40 5.7
18gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.7
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.7
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
21dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
22gb|AE004444.1| Pseudomonas aeruginosa PAO1, section 5 of 529 of ... 40 5.7
23ref|NM_205664.1| Danio rerio zgc:77398 (zgc:77398), mRNA 40 5.7
24dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.7
25dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.7
26dbj|AK121532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
27emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.7
28gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.7
29emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 5.7 
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                          
Query: 314    ctcctcgacgcgctccctgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 373
              ||||||||||||||||   |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 148020 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 147961

                                                             
Query: 374    acgcagatctgcctggccctcgcggcgctggcgctccgcgcggaggg 420
              |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 147960 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgaggg 147914



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 137    gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 182
              |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 148218 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 148173
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                            
Query: 314      ctcctcgacgcgctccctgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 373
                ||||||||||||||||   |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 19279232 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 19279173

                                                               
Query: 374      acgcagatctgcctggccctcgcggcgctggcgctccgcgcggaggg 420
                |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 19279172 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgaggg 19279126



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 137      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 182
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19279430 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19279385
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                            
Query: 314      ctcctcgacgcgctccctgtcgcagcgcgccgtttctgccttgcccctccccggctgctc 373
                ||||||||||||||||   |||| ||| | || |||||||| | ||| || |||||||||
Sbjct: 19438781 ctcctcgacgcgctcctcctcgcggcggggcggttctgcctcggcccgccgcggctgctc 19438722

                                                               
Query: 374      acgcagatctgcctggccctcgcggcgctggcgctccgcgcggaggg 420
                |||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 19438721 acgcagatctccctggcgctcgcggcgctggcgctccgcgccgaggg 19438675



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 137      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 182
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19438979 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19438934
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 386     ctggccctcgcggcgctggcgct 408
               |||||||||||||||||||||||
Sbjct: 1830680 ctggccctcgcggcgctggcgct 1830658
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 306     ccgcgcagctcctcgacgcgctccctgtcg 335
               ||||||||| |||||||||||||| |||||
Sbjct: 1036561 ccgcgcagcacctcgacgcgctccatgtcg 1036532
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 304    cgccgcgcagctcctcgacgcgctc 328
              ||||||||||| |||||||||||||
Sbjct: 213185 cgccgcgcagcacctcgacgcgctc 213161
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 304    cgccgcgcagctcctcgacgcgctc 328
              ||||||||||| |||||||||||||
Sbjct: 125211 cgccgcgcagcacctcgacgcgctc 125187
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>gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric siderophore receptor
           (bfrB) gene, complete cds
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 304 cgccgcgcagctcctcgacgcgctc 328
           ||||||||||| |||||||||||||
Sbjct: 715 cgccgcgcagcacctcgacgcgctc 691
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>gb|AC121540.14| Mus musculus chromosome 3, clone RP23-48L9, complete sequence
          Length = 224634

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 345   gtttctgccttgcccctcccc 365
             |||||||||||||||||||||
Sbjct: 73344 gtttctgccttgcccctcccc 73364
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 305     gccgcgcagctcctcgacgcgctcc 329
               |||||||||| ||||||||||||||
Sbjct: 5454499 gccgcgcagcacctcgacgcgctcc 5454523



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 393     tcgcggcgctggcgctccgcgcggaggg 420
               ||||||||||||||||| |||| |||||
Sbjct: 3475629 tcgcggcgctggcgctcggcgccgaggg 3475602
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     tcagctcgccgcggccgtgca 96
              |||||||||||||||||||||
Sbjct: 370836 tcagctcgccgcggccgtgca 370856



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     cagctcctcgacgcgctccc 330
               ||||||||||||||||||||
Sbjct: 2468190 cagctcctcgacgcgctccc 2468171
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>ref|XM_473266.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 80  ctcgccgcggccgtgcacgc 99
           ||||||||||||||||||||
Sbjct: 450 ctcgccgcggccgtgcacgc 469
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>gb|BC053136.1| Danio rerio zgc:77398, mRNA (cDNA clone IMAGE:6789857), partial cds
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cgcgcagctcctcgacgcgc 326
            ||||||||||||||||||||
Sbjct: 1002 cgcgcagctcctcgacgcgc 983
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    cctggccctcgcggcgctgg 404
              ||||||||||||||||||||
Sbjct: 437321 cctggccctcgcggcgctgg 437340
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 333     tcgcagcgcgccgtttctgccttg 356
               ||||||||||||| ||||||||||
Sbjct: 1169272 tcgcagcgcgccgattctgccttg 1169249
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ctcgccgcggccgtgcacgc 99
             ||||||||||||||||||||
Sbjct: 15310 ctcgccgcggccgtgcacgc 15329
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>gb|BC065604.1| Danio rerio zgc:77398, mRNA (cDNA clone MGC:77398 IMAGE:6969640),
            complete cds
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cgcgcagctcctcgacgcgc 326
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 393     tcgcggcgctggcgctccgcgcgg 416
               |||||||||||||||||| |||||
Sbjct: 2700599 tcgcggcgctggcgctcctcgcgg 2700576
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 64      ggacatccaggctcagctcgccgc 87
               |||||||||||| |||||||||||
Sbjct: 2833843 ggacatccaggcgcagctcgccgc 2833820
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 80       ctcgccgcggccgtgcacgc 99
                ||||||||||||||||||||
Sbjct: 26478423 ctcgccgcggccgtgcacgc 26478442
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   cctggccctcgcggcgctggcgct 408
             |||||||||||| |||||||||||
Sbjct: 37868 cctggccctcgccgcgctggcgct 37891
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>gb|AE004444.1| Pseudomonas aeruginosa PAO1, section 5 of 529 of the complete genome
          Length = 10060

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 386  ctggccctcgcggcgctggc 405
            ||||||||||||||||||||
Sbjct: 3252 ctggccctcgcggcgctggc 3233
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>ref|NM_205664.1| Danio rerio zgc:77398 (zgc:77398), mRNA
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cgcgcagctcctcgacgcgc 326
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     aggctcagctcgccgcggcc 91
              ||||||||||||||||||||
Sbjct: 697061 aggctcagctcgccgcggcc 697042
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 362     ccccggctgctcacgcagatctgc 385
               |||||||||||| |||||||||||
Sbjct: 3893862 ccccggctgctcgcgcagatctgc 3893839
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>dbj|AK121532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030P20, full
           insert sequence
          Length = 1683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 80  ctcgccgcggccgtgcacgc 99
           ||||||||||||||||||||
Sbjct: 566 ctcgccgcggccgtgcacgc 585
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 337     agcgcgccgtttctgccttgcccc 360
               ||||| ||||||||||||||||||
Sbjct: 4954170 agcgcaccgtttctgccttgcccc 4954147



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gccctcgcggcgctggcgct 408
              ||||||||||||||||||||
Sbjct: 554053 gccctcgcggcgctggcgct 554072
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gccgcaggcgtgggcgctgt 188
               ||||||||||||||||||||
Sbjct: 1957952 gccgcaggcgtgggcgctgt 1957933
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     ctcgccgcggccgtgcacgc 99
              ||||||||||||||||||||
Sbjct: 119063 ctcgccgcggccgtgcacgc 119082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,352,953
Number of Sequences: 3902068
Number of extensions: 2352953
Number of successful extensions: 50842
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49127
Number of HSP's gapped (non-prelim): 1715
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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