Clone Information

BLAST Search Result

Clone Name	bastl19g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	347	2e-92
2	dbj\|AP005288.3\| Oryza sativa (japonica cultivar-group) genomic D...	347	2e-92
3	dbj\|AP005191.3\| Oryza sativa (japonica cultivar-group) genomic D...	347	2e-92
4	dbj\|AP005776.3\| Oryza sativa (japonica cultivar-group) genomic D...	339	4e-90
5	dbj\|AP005721.3\| Oryza sativa (japonica cultivar-group) genomic D...	339	4e-90
6	dbj\|AK067944.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	339	4e-90
7	dbj\|AP005649.3\| Oryza sativa (japonica cultivar-group) genomic D...	323	3e-85
8	dbj\|AP005316.3\| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
9	ref\|NM_125823.2\| Arabidopsis thaliana unknown protein AT5G64270 ...	52	0.001
10	dbj\|AB008268.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	52	0.001
11	gb\|AC156992.13\| Mus musculus chromosome 7, clone RP23-474C17, co...	48	0.023
12	gb\|AF283502.1\| Cryphonectria parasitica Crypt1 transposon transp...	48	0.023
13	gb\|AC133511.3\| Mus musculus BAC clone RP23-413E2 from 10, comple...	44	0.36
14	gb\|AC153540.4\| Mus musculus 10 BAC RP23-356N9 (Roswell Park Canc...	44	0.36
15	gb\|AC157583.9\| Mus musculus chromosome 15, clone RP24-367L4, com...	42	1.4
16	gb\|AC107753.10\| Mus musculus chromosome 15, clone RP23-243P15, c...	42	1.4
17	gb\|AC163018.3\| Mus musculus chromosome 15, clone RP24-366J14, co...	42	1.4
18	gb\|AC121827.3\| Mus musculus BAC clone RP23-476B3 from chromosome...	40	5.7
19	gb\|AC147381.3\| Pan troglodytes BAC clone RP43-162H15 from 7, com...	40	5.7
20	gb\|AC147047.2\| Mus musculus BAC clone RP23-97D19 from chromosome...	40	5.7
21	gb\|AC073127.11\| Homo sapiens BAC clone RP11-645N11 from 7, compl...	40	5.7
22	gb\|AC122510.5\| Mus musculus BAC clone RP24-445P13 from chromosom...	40	5.7
23	ref\|XM_814627.1\| Trypanosoma cruzi strain CL Brener mucin-associ...	40	5.7
24	gb\|AC163436.3\| Mus musculus chromosome 1, clone RP23-102H12, com...	40	5.7
25	gb\|AC116316.4\| Homo sapiens BAC clone RP11-1258N14 from 4, compl...	40	5.7
26	emb\|BX539312.7\| Mouse DNA sequence from clone RP24-164C21 on chr...	40	5.7
27	gb\|AC102900.12\| Mus musculus chromosome 1, clone RP24-315J13, co...	40	5.7
28	emb\|CT030166.8\| Mouse DNA sequence from clone RP23-320I11 on chr...	40	5.7
29	gb\|AC149276.2\| Mus musculus BAC clone RP24-316O8 from 6, complet...	40	5.7

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  347 bits (175), Expect = 2e-92
 Identities = 274/307 (89%)
 Strand = Plus / Minus

                                                                           
Query: 59      cctcagactgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctg 118
               |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 2603325 cctccgactgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctg 2603266

                                                                           
Query: 119     gacgtgttggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactc 178
               | ||||| || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||
Sbjct: 2603265 gtcgtgtcggggatgcgacgccgtcggtgagaaggaatcggtgggatgagaccccaactc 2603206

                                                                           
Query: 179     cagggaggatggctgacgcagatgcaacccctgcagccggtggcattactccaggagcca 238
               | ||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 2603205 ctgggaggatggccgatgcggatgcaacacctgcagctggtggcattactccaggtgcca 2603146

                                                                           
Query: 239     ccccttctggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacac 298
               | |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2603145 caccttctggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacac 2603086

                                                                           
Query: 299     ccaagaaacagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctg 358
               ||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||
Sbjct: 2603085 ccaagaagcagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctg 2603026

                      
Query: 359     gtggcac 365
               | |||||
Sbjct: 2603025 gaggcac 2603019



 Score =  339 bits (171), Expect = 4e-90
 Identities = 267/299 (89%)
 Strand = Plus / Minus

                                                                           
Query: 67      tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
               |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 2322641 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 2322582

                                                                           
Query: 127     ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
               || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct: 2322581 ggggatgcgacgccgtcggtgagaaggaatcggtgggatgagacaccaactcctgggagg 2322522

                                                                           
Query: 187     atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
               ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 2322521 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 2322462

                                                                           
Query: 247     ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
               || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 2322461 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 2322402

                                                                          
Query: 307     cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
               ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 2322401 cagagatcgagatgggatgagactcctgctagtatgggtagtgctacacctggaggcac 2322343



 Score =  323 bits (163), Expect = 3e-85
 Identities = 265/299 (88%)
 Strand = Plus / Plus

                                                                           
Query: 67      tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
               |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 2546645 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 2546704

                                                                           
Query: 127     ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
               || ||||| || || || ||||| |||||| | ||||||||||| |||||||| ||||||
Sbjct: 2546705 ggggatgcgacaccgtcggtgagaaggaatcgttgggatgagacaccaactcctgggagg 2546764

                                                                           
Query: 187     atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
               ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 2546765 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 2546824

                                                                           
Query: 247     ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
               || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 2546825 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 2546884

                                                                          
Query: 307     cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
               ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 2546885 cagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctggaggcac 2546943



 Score =  111 bits (56), Expect = 2e-21
 Identities = 113/132 (85%)
 Strand = Plus / Plus

                                                                            
Query: 82       gcaactcctgggattgggcgctgggacgccacccctggacgtgttggagatgccacgccc 141
                |||||||| ||||| ||||||||||||||||| ||||| || |  |||| ||| ||||||
Sbjct: 16550148 gcaactcccgggatcgggcgctgggacgccacgcctgggcgcgccggaggtgcgacgccc 16550207

                                                                            
Query: 142      tctgtgaggaggaataggtgggatgagactccaactccagggaggatggctgacgcagat 201
                ||  ||| ||||||| | ||||||||||| || |||||||||||||||||||| || |||
Sbjct: 16550208 tccctgaagaggaatcgttgggatgagaccccgactccagggaggatggctgatgcggat 16550267

                            
Query: 202      gcaacccctgca 213
                | ||||||||||
Sbjct: 16550268 ggaacccctgca 16550279

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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score =  347 bits (175), Expect = 2e-92
 Identities = 274/307 (89%)
 Strand = Plus / Minus

                                                                         
Query: 59    cctcagactgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctg 118
             |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 82108 cctccgactgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctg 82049

                                                                         
Query: 119   gacgtgttggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactc 178
             | ||||| || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||
Sbjct: 82048 gtcgtgtcggggatgcgacgccgtcggtgagaaggaatcggtgggatgagaccccaactc 81989

                                                                         
Query: 179   cagggaggatggctgacgcagatgcaacccctgcagccggtggcattactccaggagcca 238
             | ||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 81988 ctgggaggatggccgatgcggatgcaacacctgcagctggtggcattactccaggtgcca 81929

                                                                         
Query: 239   ccccttctggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacac 298
             | |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81928 caccttctggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacac 81869

                                                                         
Query: 299   ccaagaaacagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctg 358
             ||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||
Sbjct: 81868 ccaagaagcagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctg 81809

                    
Query: 359   gtggcac 365
             | |||||
Sbjct: 81808 gaggcac 81802



 Score =  323 bits (163), Expect = 3e-85
 Identities = 265/299 (88%)
 Strand = Plus / Plus

                                                                         
Query: 67    tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
             |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 25428 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 25487

                                                                         
Query: 127   ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
             || ||||| || || || ||||| |||||| | ||||||||||| |||||||| ||||||
Sbjct: 25488 ggggatgcgacaccgtcggtgagaaggaatcgttgggatgagacaccaactcctgggagg 25547

                                                                         
Query: 187   atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
             ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 25548 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 25607

                                                                         
Query: 247   ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
             || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 25608 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 25667

                                                                        
Query: 307   cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
             ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 25668 cagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctggaggcac 25726

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>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0479D12
          Length = 148362

 Score =  347 bits (175), Expect = 2e-92
 Identities = 274/307 (89%)
 Strand = Plus / Minus

                                                                        
Query: 59   cctcagactgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctg 118
            |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 5547 cctccgactgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctg 5488

                                                                        
Query: 119  gacgtgttggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactc 178
            | ||||| || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||
Sbjct: 5487 gtcgtgtcggggatgcgacgccgtcggtgagaaggaatcggtgggatgagaccccaactc 5428

                                                                        
Query: 179  cagggaggatggctgacgcagatgcaacccctgcagccggtggcattactccaggagcca 238
            | ||||||||||| || || |||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 5427 ctgggaggatggccgatgcggatgcaacacctgcagctggtggcattactccaggtgcca 5368

                                                                        
Query: 239  ccccttctggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacac 298
            | |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5367 caccttctggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacac 5308

                                                                        
Query: 299  ccaagaaacagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctg 358
            ||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||
Sbjct: 5307 ccaagaagcagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctg 5248

                   
Query: 359  gtggcac 365
            | |||||
Sbjct: 5247 gaggcac 5241

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>dbj|AP005776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0018G11
          Length = 121084

 Score =  339 bits (171), Expect = 4e-90
 Identities = 267/299 (89%)
 Strand = Plus / Minus

                                                                         
Query: 67    tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
             |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 58718 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 58659

                                                                         
Query: 127   ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
             || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct: 58658 ggggatgcgacgccgtcggtgagaaggaatcggtgggatgagacaccaactcctgggagg 58599

                                                                         
Query: 187   atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
             ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 58598 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 58539

                                                                         
Query: 247   ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
             || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 58538 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 58479

                                                                        
Query: 307   cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
             ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 58478 cagagatcgagatgggatgagactcctgctagtatgggtagtgctacacctggaggcac 58420

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>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_E07
          Length = 113187

 Score =  339 bits (171), Expect = 4e-90
 Identities = 267/299 (89%)
 Strand = Plus / Minus

                                                                          
Query: 67     tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
              |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 109590 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 109531

                                                                          
Query: 127    ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
              || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct: 109530 ggggatgcgacgccgtcggtgagaaggaatcggtgggatgagacaccaactcctgggagg 109471

                                                                          
Query: 187    atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
              ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 109470 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 109411

                                                                          
Query: 247    ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
              || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 109410 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 109351

                                                                         
Query: 307    cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
              ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 109350 cagagatcgagatgggatgagactcctgctagtatgggtagtgctacacctggaggcac 109292

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>dbj|AK067944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123M24, full
           insert sequence
          Length = 4241

 Score =  339 bits (171), Expect = 4e-90
 Identities = 267/299 (89%)
 Strand = Plus / Plus

                                                                       
Query: 67  tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 698 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 757

                                                                       
Query: 127 ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
           || ||||| ||||| || ||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct: 758 ggggatgcgacgccgtcggtgagaaggaatcggtgggatgagacaccaactcctgggagg 817

                                                                       
Query: 187 atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
           ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 818 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 877

                                                                       
Query: 247 ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
           || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 878 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 937

                                                                      
Query: 307 cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
           ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 938 cagagatcgagatgggatgagactcctgctagtatgggtagtgctacacctggaggcac 996

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>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0064G16
          Length = 166453

 Score =  323 bits (163), Expect = 3e-85
 Identities = 265/299 (88%)
 Strand = Plus / Plus

                                                                          
Query: 67     tgggatgctcctgacgcaactcctgggattgggcgctgggacgccacccctggacgtgtt 126
              |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 162566 tgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgtgtc 162625

                                                                          
Query: 127    ggagatgccacgccctctgtgaggaggaataggtgggatgagactccaactccagggagg 186
              || ||||| || || || ||||| |||||| | ||||||||||| |||||||| ||||||
Sbjct: 162626 ggggatgcgacaccgtcggtgagaaggaatcgttgggatgagacaccaactcctgggagg 162685

                                                                          
Query: 187    atggctgacgcagatgcaacccctgcagccggtggcattactccaggagccaccccttct 246
              ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 162686 atggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacaccttct 162745

                                                                          
Query: 247    ggggcatgggatgctactcctaagctgcctggtgggcttgtcacaccaacacccaagaaa 306
              || || |||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 162746 ggagcttgggatgctactcctaagctgcctggtgggcttgtcacgccaacacccaagaag 162805

                                                                         
Query: 307    cagaggtcgaggtgggacgagacaccagcgagtatggggagtgcaacacctggtggcac 365
              ||||| ||||| ||||| ||||| || || |||||||| ||||| |||||||| |||||
Sbjct: 162806 cagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctggaggcac 162864

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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0527E02
          Length = 176826

 Score =  111 bits (56), Expect = 2e-21
 Identities = 113/132 (85%)
 Strand = Plus / Plus

                                                                          
Query: 82     gcaactcctgggattgggcgctgggacgccacccctggacgtgttggagatgccacgccc 141
              |||||||| ||||| ||||||||||||||||| ||||| || |  |||| ||| ||||||
Sbjct: 123563 gcaactcccgggatcgggcgctgggacgccacgcctgggcgcgccggaggtgcgacgccc 123622

                                                                          
Query: 142    tctgtgaggaggaataggtgggatgagactccaactccagggaggatggctgacgcagat 201
              ||  ||| ||||||| | ||||||||||| || |||||||||||||||||||| || |||
Sbjct: 123623 tccctgaagaggaatcgttgggatgagaccccgactccagggaggatggctgatgcggat 123682

                          
Query: 202    gcaacccctgca 213
              | ||||||||||
Sbjct: 123683 ggaacccctgca 123694

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>ref|NM_125823.2| Arabidopsis thaliana unknown protein AT5G64270 mRNA, complete cds
          Length = 4146

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 316  aggtgggacgagacaccagcgagtatggggagtgcaacacct 357
            ||||||||||| |||||||| | |||||||||||| ||||||
Sbjct: 1003 aggtgggacgaaacaccagccactatggggagtgctacacct 1044

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>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1
          Length = 83594

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 316   aggtgggacgagacaccagcgagtatggggagtgcaacacct 357
             ||||||||||| |||||||| | |||||||||||| ||||||
Sbjct: 32566 aggtgggacgaaacaccagccactatggggagtgctacacct 32607

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>gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, complete sequence
          Length = 178169

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 291    accaacacccaagaaacagaggtc 314
              ||||||||||||||||||||||||
Sbjct: 140775 accaacacccaagaaacagaggtc 140798

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>gb|AF283502.1| Cryphonectria parasitica Crypt1 transposon transposase gene, complete
            cds
          Length = 3563

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 23   acggcgatgccgctgctggggcca 46
            ||||||||||||||||||||||||
Sbjct: 1517 acggcgatgccgctgctggggcca 1540

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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 291    accaacacccaagaaacagagg 312
              ||||||||||||||||||||||
Sbjct: 188297 accaacacccaagaaacagagg 188318

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>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 198205

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 291    accaacacccaagaaacagagg 312
              ||||||||||||||||||||||
Sbjct: 161450 accaacacccaagaaacagagg 161429

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>gb|AC157583.9| Mus musculus chromosome 15, clone RP24-367L4, complete sequence
          Length = 185401

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  gcattactccaggagccaccccttc 245
            |||||||||||||| ||||||||||
Sbjct: 8161 gcattactccaggacccaccccttc 8137

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>gb|AC107753.10| Mus musculus chromosome 15, clone RP23-243P15, complete sequence
          Length = 173814

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 221   gcattactccaggagccaccccttc 245
             |||||||||||||| ||||||||||
Sbjct: 67829 gcattactccaggacccaccccttc 67805

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>gb|AC163018.3| Mus musculus chromosome 15, clone RP24-366J14, complete sequence
          Length = 175394

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 221   gcattactccaggagccaccccttc 245
             |||||||||||||| ||||||||||
Sbjct: 82121 gcattactccaggacccaccccttc 82097

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>gb|AC121827.3| Mus musculus BAC clone RP23-476B3 from chromosome 7, complete sequence
          Length = 183470

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ggacagacaccatttggggc 416
              ||||||||||||||||||||
Sbjct: 102493 ggacagacaccatttggggc 102474

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>gb|AC147381.3| Pan troglodytes BAC clone RP43-162H15 from 7, complete sequence
          Length = 162222

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ggccaagaagtccaagacct 61
             ||||||||||||||||||||
Sbjct: 73043 ggccaagaagtccaagacct 73024

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>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence
          Length = 239653

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   aagctgcctggtgggcttgt 287
             ||||||||||||||||||||
Sbjct: 21202 aagctgcctggtgggcttgt 21183

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>gb|AC073127.11| Homo sapiens BAC clone RP11-645N11 from 7, complete sequence
          Length = 155842

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    ggccaagaagtccaagacct 61
             ||||||||||||||||||||
Sbjct: 60450 ggccaagaagtccaagacct 60469

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>gb|AC122510.5| Mus musculus BAC clone RP24-445P13 from chromosome 6, complete sequence
          Length = 163800

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   aagctgcctggtgggcttgt 287
             ||||||||||||||||||||
Sbjct: 47986 aagctgcctggtgggcttgt 47967

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>ref|XM_814627.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
            (MASP) (Tc00.1047053506763.130) partial mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  ggcacggcagcgacacctgc 380
            ||||||||||||||||||||
Sbjct: 1450 ggcacggcagcgacacctgc 1469

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>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence
          Length = 198253

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gcctggtgggcttgtcacac 292
             ||||||||||||||||||||
Sbjct: 41262 gcctggtgggcttgtcacac 41281

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>gb|AC116316.4| Homo sapiens BAC clone RP11-1258N14 from 4, complete sequence
          Length = 130364

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tccaggagccaccccttctg 247
             ||||||||||||||||||||
Sbjct: 32523 tccaggagccaccccttctg 32504

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>emb|BX539312.7| Mouse DNA sequence from clone RP24-164C21 on chromosome 7, complete
             sequence
          Length = 123224

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   ggacagacaccatttggggc 416
             ||||||||||||||||||||
Sbjct: 24826 ggacagacaccatttggggc 24845

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>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence
          Length = 192545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  gcctggtgggcttgtcacac 292
            ||||||||||||||||||||
Sbjct: 6791 gcctggtgggcttgtcacac 6810

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>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete
              sequence
          Length = 222942

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ggacagacaccatttggggc 416
              ||||||||||||||||||||
Sbjct: 215163 ggacagacaccatttggggc 215144

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>gb|AC149276.2| Mus musculus BAC clone RP24-316O8 from 6, complete sequence
          Length = 193191

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    aagctgcctggtgggcttgt 287
              ||||||||||||||||||||
Sbjct: 149167 aagctgcctggtgggcttgt 149148


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,049,942
Number of Sequences: 3902068
Number of extensions: 3049942
Number of successful extensions: 55846
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55749
Number of HSP's gapped (non-prelim): 87
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result