ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19g05 |
|---|---|
| Clone Library Name | barley_pub |
>KLK13_HUMAN (Q9UKR3) Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like| protein 4) (KLK-L4) Length = 277 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 7 KGAEEGAGSHSLHRVSLLLPAQDEQAHHTNPHPPLRNSQTHKNSEQD 147 +G + G H+L RV Q + H+ PHP R S TH N + D Sbjct: 80 EGLKVYLGKHALGRVEA--GEQVREVVHSIPHPEYRRSPTHLNHDHD 124
>LIPM_NEIMA (P57037) Capsule polysaccharide modification protein lipA| Length = 704 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Frame = +2 Query: 104 PPY-------GIHKPTKIPSKINPLQKSAPRIPSQELPQSRESPPDFPIXXXXXXXXXXX 262 PPY GI+ T PS++ L +A +PS+ L Q+R++ DF I Sbjct: 98 PPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQARQA-MDF-ILQHHLSKYNHA 155 Query: 263 PQISRRDPSRTP 298 P++S P R+P Sbjct: 156 PELSDDHPLRSP 167
>MTB48_MYCTU (Q933K8) Antigen MTB48| Length = 460 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 428 GGGGSRARFVGQD*GGREKIDQAGGG-LLGVGMERLGGRA 312 GGGG + +G GG E + AG G + G+G R GG A Sbjct: 364 GGGGVPSAPLGSAIGGAESVRPAGAGDIAGLGQGRAGGGA 403
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/38 (50%), Positives = 19/38 (50%) Frame = -2 Query: 431 RGGGGSRARFVGQD*GGREKIDQAGGGLLGVGMERLGG 318 RGGGG R R GGR D GGG G G R GG Sbjct: 6 RGGGGFRGR------GGR---DGGGGGRFGGGGGRFGG 34
>AMYB_MEDSA (O22585) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan| maltohydrolase) Length = 496 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +2 Query: 80 KHTTQTHTPPYGIHKPTKIPSKINPLQKSAPRIPSQELPQSRESPPDFP 226 K + H P K I PL++S P+IP L ++ + P FP Sbjct: 437 KFVVKMHADQDYCSDPEKYNHGIPPLKRSGPKIPDDVLNEATKPIPPFP 485
>THR_DROVI (Q6V3V8) Protein three rows| Length = 1411 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/49 (38%), Positives = 20/49 (40%) Frame = -2 Query: 185 GKGFGAQIFGEDLSCSEFLWVCEFRRGGCGFVWCACSSWAGRRRETLCK 39 G A G D SC L C F G C V A SSW + TL K Sbjct: 402 GSPLAASCSGNDASCPSVLKHCVFTLGCCATV--AYSSWQPEAQATLPK 448
>NELFA_DROME (Q86NP2) Negative elongation factor A homolog| Length = 1248 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +3 Query: 282 THRGRRTQSVRPSAEALHPHPEQPAPCLINLLSSSLVLTYKPCPRAAAAALHPS 443 T G +TQS +P + P+Q P L+ S+ ++L P + A A PS Sbjct: 575 TSSGSQTQSQQPQTLQVQQAPQQSHPPLLINSSTPVILASSPSAQRAKALALPS 628
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +2 Query: 131 KIPSKINPLQKSAPRIPSQELPQSRESPP 217 +IPS I +K PR PSQ+ S+ESPP Sbjct: 1294 EIPSHIPSDEKDLPREPSQKDTISQESPP 1322
>LIPM_NEIMB (Q05013) Capsule polysaccharide modification protein lipA| Length = 704 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Frame = +2 Query: 104 PPY-------GIHKPTKIPSKINPLQKSAPRIPSQELPQSRESPPDFPIXXXXXXXXXXX 262 PPY GI+ T PS++ L +A +PS+ L Q++++ DF I Sbjct: 98 PPYSIVYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQA-MDF-ILQHHLSKYNHA 155 Query: 263 PQISRRDPSRTP 298 P++S P R+P Sbjct: 156 PELSDDHPLRSP 167
>DCP1B_PONPY (Q5R413) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 609 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Frame = +2 Query: 53 LSSFLPKTNKHTTQTHTPPYGIHKPTKIPSKINPLQKSAPRI---PSQELPQSRES 211 L S++ KT+ +T+ TP + + P +IP+ P ++P + P+ P+ RES Sbjct: 482 LESWINKTS--STEQQTPLFQVISPQRIPATAAPSLLTSPMVFAQPTSVPPKERES 535
>CAS_DROME (Q7M3M8) Transcription factor castor (Protein ming)| Length = 793 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 70 QDEQAHHTNPHPPLRNSQTHK---NSEQDKSSPKICAPN 177 Q +Q P P LR ++THK + + SS + C+PN Sbjct: 58 QQQQEQLQQPQPDLRKTRTHKRISSQNTNCSSSRSCSPN 96
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = +2 Query: 65 LPKTNKHTTQT-HTPPYGIHKPTKIPSKIN---PLQKSAPRIPS 184 LP +H T T H PP +PT PS++ L +S+P P+ Sbjct: 285 LPNPRRHRTSTGHIPPTTTSRPTGPPSRLQRPVHLYQSSPHTPN 328
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = +2 Query: 65 LPKTNKHTTQT-HTPPYGIHKPTKIPSKIN---PLQKSAPRIPS 184 LP +H T T H PP +PT PS++ L +S+P P+ Sbjct: 285 LPNPRRHRTSTGHIPPTTTSRPTGPPSRLQRPVHLYQSSPHTPN 328
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 37 SLHRVSLLLPAQDEQAHHTNPHPPLRNSQTHKNSEQDKSSP 159 S H PA++ HH +P PP S + + E+ +S P Sbjct: 1944 SSHTAIARTPAKNLAPHHASPDPPAPTSASDLHREKTQSKP 1984
>PURL_BACSK (Q5WJ86) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 741 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 119 HKPTKIPSKINPLQKSAPRIPSQELPQSRES 211 HKP+K+P+ + Q+ AP IP E+ ++ E+ Sbjct: 382 HKPSKVPAYFDAFQQQAPYIP--EITEANET 410
>PGL1_CAEEL (Q9TZQ3) P granule abnormality protein 1| Length = 730 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = -2 Query: 428 GGGGSRARFVGQD*GGREKIDQAGGGLLGVGMERLGGR 315 GGGG R + G D GGR GG G G GGR Sbjct: 672 GGGGGRGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGR 709
>AL2S4_MOUSE (Q3V0J1) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 4 protein homolog Length = 427 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +3 Query: 273 HGETHRGRRTQSVRPSAEALHPHPEQPAP 359 H E RR + P A L HPE PAP Sbjct: 76 HAEPVVNRRAEGSEPPAAELKEHPEAPAP 104
>DBP2_GIBZE (Q4IF76) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)| Length = 555 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -2 Query: 431 RGGGGSRARFVGQD*GGREKIDQAGGGLLGVGMERLGG 318 RGGGG G+D GG D+ GGG G G GG Sbjct: 14 RGGGGYGGGGYGRDRGGDRGGDRNGGGFGGNGNGYGGG 51
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)| Length = 875 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +2 Query: 107 PYGIHKPTKIPSKI--NPLQKSAPRIPSQELPQSRESPPDFP 226 PYG + P + P P Q P+ P Q+ PQ + PP P Sbjct: 94 PYGQYWPQQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPP 135
>PUNC_MOUSE (Q8BQC3) Putative neuronal cell adhesion molecule precursor| Length = 813 Score = 28.5 bits (62), Expect = 8.1 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 282 THRGRRTQSVRPSAEALHPHPEQPAPCLINLL-SSSLVLTYKPCPRAA 422 T RG SV A L P P P + LL SSSL L +KP PR A Sbjct: 514 TPRGASLASVPTLASTLGEAPVPP-PLSVRLLGSSSLQLLWKPWPRLA 560 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.131 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,947,881 Number of Sequences: 219361 Number of extensions: 1149945 Number of successful extensions: 3735 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3394 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3709 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
