ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19g02 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 40.4 bits (93), Expect = 0.003 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 18/142 (12%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILR-VLIEVFRQVGEKDF------- 425 K L+S D + + Q Q L ++ R V V + +G + + Sbjct: 62 K--------NSLTSKD--PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111 Query: 426 ---------VKENSWPELVPQL 464 + N WPEL+PQL Sbjct: 112 CVAGIACAEIPVNQWPELIPQL 133
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 40.0 bits (92), Expect = 0.004 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQL----AQALLRVEPAILRVL-IEVFRQVGEKDFVKE 434 ++ ++ D+ +++ + A A V+ +L+ L E +R V Sbjct: 62 RLLTSKD-------PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAG 114 Query: 435 --------NSWPELVPQL 464 + WPEL+PQL Sbjct: 115 IACAEIPVSQWPELIPQL 132
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 38.5 bits (88), Expect = 0.010 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 18/142 (12%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILR-VLIEVFRQVGEKDF------- 425 K L+S D + + Q Q L ++ R V V + +G + + Sbjct: 62 K--------NSLTSKD--PDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111 Query: 426 ---------VKENSWPELVPQL 464 + + WPEL+PQL Sbjct: 112 CVAGIACAEIPVSQWPELIPQL 133
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 35.4 bits (80), Expect = 0.088 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L L D T A L+ S G+ +P+ LL + D R+ AA K Sbjct: 11 LTEFLRKALDPDPTVRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIRVCAAVTFKN 68 Query: 276 FARRNM-----EGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVGEKDFVKENS 440 + +RN E S + + +L I + L + +G +DF ++ Sbjct: 69 YIKRNWRVIEDEPNKVSDPDRTAIKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQK-- 126 Query: 441 WPELVPQLKLVIQSSD 488 WP+L+ ++ +S D Sbjct: 127 WPDLLTEMVTRFRSGD 142
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 35.0 bits (79), Expect = 0.11 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALL-AVAAGDGDQGTRIAAAAYLK 272 L L TLSAD A L+ S +PI LL + D TR+A A K Sbjct: 11 LAGYLQQTLSADPNVRRPAEKLLE--STELQQNYPILLLNLIDKAQMDMTTRVAGAIAFK 68 Query: 273 IFARRNMEGGLSSSDLYR-------EFRDQLAQALLRVEPAILRVLIEVFRQVGEKDFVK 431 + +RN L S R + + +L A+ + L + +G+ DF K Sbjct: 69 NYIKRNWAAHLDSDGPDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPK 128 Query: 432 ENSWPELVPQLKLVIQSSD 488 + WP+L+ ++ S D Sbjct: 129 K--WPQLIDEMVERFASGD 145
>CSE1_MOUSE (Q9ERK4) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 31.6 bits (70), Expect = 1.3 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L TL D A L+ S G+ +P+ LL + D ++ A+ K Sbjct: 11 LTEYLKKTLDPDPAIRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKN 68 Query: 276 FARRNME------GGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVGEKDFVKEN 437 + +RN + +D + + +L I + L + +G +DF ++ Sbjct: 69 YIKRNWRIVEDEPNKICEADRV-AIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQK- 126 Query: 438 SWPELVPQLKLVIQSSD 488 WP+L+ ++ QS D Sbjct: 127 -WPDLLTEMVNRFQSGD 142
>CSE1_HUMAN (P55060) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 31.6 bits (70), Expect = 1.3 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L TL D A L+ S G+ +P+ LL + D ++ A+ K Sbjct: 11 LTEYLKKTLDPDPAIRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKN 68 Query: 276 FARRNME------GGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVGEKDFVKEN 437 + +RN + +D + + +L I + L + +G +DF ++ Sbjct: 69 YIKRNWRIVEDEPNKICEADRV-AIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQK- 126 Query: 438 SWPELVPQLKLVIQSSD 488 WP+L+ ++ QS D Sbjct: 127 -WPDLLTEMVNRFQSGD 142
>CP6D3_MUSDO (Q964Q7) Cytochrome P450 6d3 (EC 1.14.-.-) (CYPVID3) (Pyrethroid| resistance cytochrome P450) Length = 520 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 270 KIFARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVGEKDF 425 K+F R+ GL DLY +F++Q+ L +PA+L E+ RQ+ DF Sbjct: 43 KVF-RKERPFGLVMYDLYEKFQEQVVGIYLFFKPALLIRDAELARQILTSDF 93
>PROV_ECOLI (P14175) Glycine betaine/L-proline transport ATP-binding protein| proV Length = 400 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = -3 Query: 425 KIFLPNLAKNFNQHPKNCRFHSKQSLSK--LVAKLPVQIGRREPPFHVAPGENFQVS--R 258 K+ + NL K F +HP+ + +Q LSK ++ K + +G ++ + GE F + Sbjct: 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLS 63 Query: 257 GSYSCTLITI 228 GS T++ + Sbjct: 64 GSGKSTMVRL 73
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = +3 Query: 177 AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 326 AAGDP P A L + DGD A K RR G LS+ DL R Sbjct: 885 AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939
>PKP3_HUMAN (Q9Y446) Plakophilin-3| Length = 797 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -3 Query: 416 LPNLAKNFNQHPKNCRFHSKQSLSKLVAKLPVQIGRREPPFHV 288 L L +N +++ +N S + +S L+ KLP +G + PP V Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEV 717
>SYL_SYNEL (Q8DH61) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 857 Score = 29.6 bits (65), Expect = 4.8 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%) Frame = +3 Query: 228 DGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYRE--FRDQLAQALLRVEPAILRVLIEVF 401 +GD A A +K+ LSS+D Y + + + L + P + E++ Sbjct: 714 EGDYQLNTAVAELMKL------SNALSSADCYTSGVYSEGIQTLLTLLAPFAPHISEELW 767 Query: 402 RQVGEKDFVKENSWPELVP------QLKLVIQ 479 Q+G D + WP+ P ++ LVIQ Sbjct: 768 HQLGGTDSIHRQPWPKADPTALVADEITLVIQ 799
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Frame = +3 Query: 147 AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 263 AA AG +AAGD ++ + AAGDG D GT AAA Sbjct: 933 AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 225 GDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFRDQLAQ 350 G+ D G + A+LKI A+ N++ YR+F D + Q Sbjct: 350 GNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQ 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,171,816 Number of Sequences: 219361 Number of extensions: 858201 Number of successful extensions: 3071 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3070 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
