ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full insert sequence Length = 3586 Score = 101 bits (51), Expect = 2e-18 Identities = 126/151 (83%) Strand = Plus / Plus Query: 355 tgcttcgagtggaacctgcaattcttcgggtgctgattgaagtttttcgccaagttgggg 414 |||||| |||||||||| ||||||| || ||||||||||||| |||||||| | Sbjct: 387 tgcttcaagtggaacctttccttcttcgagtattgattgaagttttccgccaagtcatag 446 Query: 415 agaaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtga 474 | ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||| Sbjct: 447 aaaaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtga 506 Query: 475 tccagagcagcgatgcaattagtccaggcca 505 |||| |||||| || ||| ||||||||||| Sbjct: 507 tccacagcagcaatataataagtccaggcca 537 Score = 91.7 bits (46), Expect = 2e-15 Identities = 118/142 (83%) Strand = Plus / Plus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 137 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 196 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct: 197 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 256 Query: 225 ggggatggtgatcaaggtacaa 246 | ||||| || ||||| |||| Sbjct: 257 gctgatggggaccaaggaacaa 278
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15 map near R3342S, complete sequence Length = 140142 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 4547 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 4488 Query: 477 cagagcagcgatgcaattagtccaggcca 505 ||||||||| || ||| ||||||||||| Sbjct: 4487 cagagcagcaatataataagtccaggcca 4459 Score = 83.8 bits (42), Expect = 5e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 5615 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 5556 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct: 5555 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 5496 Query: 225 gg 226 || Sbjct: 5495 gg 5494
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21 map R3342S, complete sequence Length = 133790 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 128246 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 128187 Query: 477 cagagcagcgatgcaattagtccaggcca 505 ||||||||| || ||| ||||||||||| Sbjct: 128186 cagagcagcaatataataagtccaggcca 128158 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 763 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 822 Query: 477 cagagcagcgatgcaattagtccaggcca 505 || |||||| || ||| ||||||||||| Sbjct: 823 cacagcagcaatataataagtccaggcca 851 Score = 83.8 bits (42), Expect = 5e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 129314 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 129255 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct: 129254 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 129195 Query: 225 gg 226 || Sbjct: 129194 gg 129193
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 27717426 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 27717485 Query: 477 cagagcagcgatgcaattagtccaggcca 505 ||||||||| || ||| ||||||||||| Sbjct: 27717486 cagagcagcaatataataagtccaggcca 27717514 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 27845868 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27845809 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct: 27845808 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27845749 Query: 225 gg 226 || Sbjct: 27845748 gg 27845747 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 27844909 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 27844850 Query: 477 cagagcagcgatgcaattagtccaggcca 505 || |||||| || ||| ||||||||||| Sbjct: 27844849 cacagcagcaatataataagtccaggcca 27844821 Score = 83.8 bits (42), Expect = 5e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 27716358 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27716417 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct: 27716418 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27716477 Query: 225 gg 226 || Sbjct: 27716478 gg 27716479 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 199 ccatcgccctcctcgccgtcgccgc 223 |||||||||||||| |||||||||| Sbjct: 22477385 ccatcgccctcctctccgtcgccgc 22477409
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 27741414 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 27741473 Query: 477 cagagcagcgatgcaattagtccaggcca 505 ||||||||| || ||| ||||||||||| Sbjct: 27741474 cagagcagcaatataataagtccaggcca 27741502 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 27869856 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27869797 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct: 27869796 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27869737 Query: 225 gg 226 || Sbjct: 27869736 gg 27869735 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 417 aaagattttgtcaaggagaattcgtggcctgaacttgtgcctcagttgaagctggtgatc 476 ||||||||||||||||| |||| ||||||||||||||| || |||||||||| |||||| Sbjct: 27868897 aaagattttgtcaaggaaaatttgtggcctgaacttgtcccccagttgaagcaagtgatc 27868838 Query: 477 cagagcagcgatgcaattagtccaggcca 505 || |||||| || ||| ||||||||||| Sbjct: 27868837 cacagcagcaatataataagtccaggcca 27868809 Score = 83.8 bits (42), Expect = 5e-13 Identities = 102/122 (83%) Strand = Plus / Plus Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164 |||||| |||||||||| ||| ||||||| || | |||||||||||||| | || ||| Sbjct: 27740346 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27740405 Query: 165 gaccggatctccgcggccggcgacccccgcttccccatcgccctcctcgccgtcgccgca 224 | ||||| |||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct: 27740406 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccgca 27740465 Query: 225 gg 226 || Sbjct: 27740466 gg 27740467 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 199 ccatcgccctcctcgccgtcgccgc 223 |||||||||||||| |||||||||| Sbjct: 22787296 ccatcgccctcctctccgtcgccgc 22787320
>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA Length = 1713 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 ccggagcctcctcgccgccaccc 120 ||||||||||||||||||||||| Sbjct: 675 ccggagcctcctcgccgccaccc 653
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 ccggagcctcctcgccgccaccc 120 ||||||||||||||||||||||| Sbjct: 8347567 ccggagcctcctcgccgccaccc 8347545 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 40214424 tcgccctcctcgccgtcgcc 40214443 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 25593597 tcgccctcctcgccgtcgcc 25593578 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 23461169 tcgccctcctcgccgtcgcc 23461150
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 ccggagcctcctcgccgccaccc 120 ||||||||||||||||||||||| Sbjct: 141498 ccggagcctcctcgccgccaccc 141476
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0503G09 Length = 59843 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 98 ccggagcctcctcgccgccaccc 120 ||||||||||||||||||||||| Sbjct: 12193 ccggagcctcctcgccgccaccc 12171
>ref|XM_479592.1| Oryza sativa (japonica cultivar-group), mRNA Length = 546 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cgccctcctcgccgtcgccgc 223 ||||||||||||||||||||| Sbjct: 51 cgccctcctcgccgtcgccgc 71
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030E22, complete sequence Length = 135468 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 199 ccatcgccctcctcgccgtcgccgc 223 |||||||||||||| |||||||||| Sbjct: 34530 ccatcgccctcctctccgtcgccgc 34554
>gb|AC129590.4| Mus musculus BAC clone RP24-428B12 from chromosome 14, complete sequence Length = 180177 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ttcgccaagttggggagaaag 420 ||||||||||||||||||||| Sbjct: 80744 ttcgccaagttggggagaaag 80724
>gb|AC104448.2| Homo sapiens chromosome 3 clone RP11-24C3, complete sequence Length = 155470 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 ccctcctcgccgtcgccgcagggga 229 ||||||||||||||||||| ||||| Sbjct: 88414 ccctcctcgccgtcgccgcggggga 88390
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 cgccctcctcgccgtcgccgc 223 ||||||||||||||||||||| Sbjct: 29099757 cgccctcctcgccgtcgccgc 29099737
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 cgccctcctcgccgtcgccgc 223 ||||||||||||||||||||| Sbjct: 34875 cgccctcctcgccgtcgccgc 34855
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 cgccctcctcgccgtcgccgc 223 ||||||||||||||||||||| Sbjct: 47714 cgccctcctcgccgtcgccgc 47694
>dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full insert sequence Length = 890 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cgccctcctcgccgtcgccgc 223 ||||||||||||||||||||| Sbjct: 100 cgccctcctcgccgtcgccgc 120
>gb|AC134772.2| Homo sapiens chromosome 3 clone RP13-794C1, complete sequence Length = 177231 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 ccctcctcgccgtcgccgcagggga 229 ||||||||||||||||||| ||||| Sbjct: 42712 ccctcctcgccgtcgccgccgggga 42688
>ref|XM_480820.1| Oryza sativa (japonica cultivar-group), mRNA Length = 697 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccccatcgccctcctcgccg 216 |||||||||||||||||||| Sbjct: 184 ccccatcgccctcctcgccg 165
>ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1476 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 1343 tcgccctcctcgccgtcgcc 1324
>gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, complete sequence Length = 215400 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 gcaacatggaaggggggctc 305 |||||||||||||||||||| Sbjct: 21132 gcaacatggaaggggggctc 21151
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gatctccgcggccggcgacc 189 |||||||||||||||||||| Sbjct: 1024066 gatctccgcggccggcgacc 1024085
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gccgacaaaacgtccgtgga 145 |||||||||||||||||||| Sbjct: 2241288 gccgacaaaacgtccgtgga 2241269
>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene region Length = 16710 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 5172 tcgccctcctcgccgtcgcc 5191
>gb|AC125183.4| Mus musculus BAC clone RP23-297M4 from 5, complete sequence Length = 221622 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcaacatggaaggggggctc 305 |||||||||||||||||||| Sbjct: 53539 gcaacatggaaggggggctc 53520
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gatctccgcggccggcgacc 189 |||||||||||||||||||| Sbjct: 339780 gatctccgcggccggcgacc 339799
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gatctccgcggccggcgacc 189 |||||||||||||||||||| Sbjct: 37519 gatctccgcggccggcgacc 37538
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 13376 tcgccctcctcgccgtcgcc 13395
>ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA Length = 4275 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cctcctcgccgccaccctca 123 |||||||||||||||||||| Sbjct: 2235 cctcctcgccgccaccctca 2216
>gb|U82619.2|SFU82619 Shigella flexneri bacteriophage V, complete genome Length = 37074 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 gtcgccgcaggggatggtgatcaa 239 |||||||| ||||||||||||||| Sbjct: 11201 gtcgccgctggggatggtgatcaa 11224
>gb|AC175674.2| Gallus gallus BAC clone CH261-137E22 from chromosome ul, complete sequence Length = 216348 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cagcttgctcaggctctgct 358 |||||||||||||||||||| Sbjct: 143379 cagcttgctcaggctctgct 143360
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccccatcgccctcctcgccg 216 |||||||||||||||||||| Sbjct: 7966622 ccccatcgccctcctcgccg 7966603
>gb|AC007881.4| Homo sapiens BAC clone RP11-467P9 from 2, complete sequence Length = 171247 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcaggctctgcttcgagtggaac 369 ||||||||||||||| |||||||| Sbjct: 136498 ctcaggctctgcttctagtggaac 136521
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 80202 tcgccctcctcgccgtcgcc 80221
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tcgccgccaccctcagcgcc 128 |||||||||||||||||||| Sbjct: 5832567 tcgccgccaccctcagcgcc 5832586
>gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:103673 IMAGE:7256976), complete cds Length = 3274 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cctcctcgccgccaccctca 123 |||||||||||||||||||| Sbjct: 2193 cctcctcgccgccaccctca 2174
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461A06 Length = 136384 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccccatcgccctcctcgccg 216 |||||||||||||||||||| Sbjct: 38792 ccccatcgccctcctcgccg 38773
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 40403 tcgccctcctcgccgtcgcc 40384
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 121200 tcgccctcctcgccgtcgcc 121181
>dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds Length = 4275 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cctcctcgccgccaccctca 123 |||||||||||||||||||| Sbjct: 2235 cctcctcgccgccaccctca 2216
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 24474 tcgccctcctcgccgtcgcc 24455
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 5774 tcgccctcctcgccgtcgcc 5793
>gb|AE004992.1| Halobacterium sp. NRC-1 section 23 of 170 of the complete genome Length = 16488 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 tctccgcggccggcgacccc 191 |||||||||||||||||||| Sbjct: 7611 tctccgcggccggcgacccc 7630
>dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A06, full insert sequence Length = 697 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccccatcgccctcctcgccg 216 |||||||||||||||||||| Sbjct: 184 ccccatcgccctcctcgccg 165
>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full insert sequence Length = 1896 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full insert sequence Length = 1896 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tcgccctcctcgccgtcgcc 221 |||||||||||||||||||| Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence Length = 153206 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 caagttggggagaaagattt 424 |||||||||||||||||||| Sbjct: 36907 caagttggggagaaagattt 36888
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 cagcttgctcaggctctgct 358 |||||||||||||||||||| Sbjct: 5708487 cagcttgctcaggctctgct 5708468
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cctcctcgccgccaccctca 123 |||||||||||||||||||| Sbjct: 1751706 cctcctcgccgccaccctca 1751725 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,603,943 Number of Sequences: 3902068 Number of extensions: 3603943 Number of successful extensions: 76478 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75462 Number of HSP's gapped (non-prelim): 1012 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
