ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 ... 35 0.052
2EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precur... 29 3.7
3YRM8_CAEEL (Q09417) Hypothetical WD-repeat protein R06F6.8 28 8.3

>ALA2_ARATH (P98205) Putative phospholipid-transporting ATPase 2 (EC 3.6.3.1)|
           (Aminophospholipid flippase 2)
          Length = 1107

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +1

Query: 340 MQRFVYIND-ESCRDSYCDNRVSNTK 414
           M+RFVYIND E+ ++  CDNR+SN K
Sbjct: 1   MKRFVYINDDEASKELCCDNRISNRK 26



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>EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8)
          Length = 293

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 135 EVRVQVARGCRWVKESGAWLSEKTPLVPSRLRSLQ 31
           E+R ++ +  +W K++GAW+    P+ P  LR  Q
Sbjct: 218 ELRGRLEKLEQWAKQAGAWVRAVLPMPPEELRPEQ 252



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>YRM8_CAEEL (Q09417) Hypothetical WD-repeat protein R06F6.8|
          Length = 1470

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 9    FLRAPPFSGDFGVSRAPTASSPRA 80
            F R PP S    +SR PT SSP A
Sbjct: 975  FFRTPPPSAKTSLSRRPTVSSPSA 998


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,352,204
Number of Sequences: 219361
Number of extensions: 739310
Number of successful extensions: 2077
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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