Clone Information

BLAST Search Result

Clone Name	bastl19f07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	WSC4_YEAST (P38739) Cell wall integrity and stress response comp...	35	0.070
2	YIA_RHISP (P17986) Insertion element ISR1 hypothetical 30.8 kDa ...	34	0.16
3	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	33	0.45
4	VGLX_EHV1B (P28968) Glycoprotein X precursor	32	0.78
5	VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor	32	0.78
6	PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB	32	1.0
7	PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB	32	1.0
8	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	32	1.0
9	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	31	1.7
10	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	31	1.7
11	YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P...	31	1.7
12	PO2F3_HUMAN (Q9UKI9) POU domain, class 2, transcription factor 3...	31	1.7
13	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	31	1.7
14	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	30	2.3
15	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	30	2.3
16	SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor	30	2.3
17	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	30	2.3
18	COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor	30	2.9
19	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	30	2.9
20	COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Co...	30	2.9
21	LIPA_STRAW (Q82AP7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid sy...	30	3.8
22	LIPA_STRCO (Q9S2P2) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid sy...	30	3.8
23	YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region	29	5.0
24	MYSC_ACACA (P10569) Myosin IC heavy chain	29	5.0
25	MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domai...	29	5.0
26	TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily ...	29	5.0
27	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	29	5.0
28	EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (...	29	5.0
29	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	6.6
30	YQ33_CAEEL (Q09233) Putative cuticle collagen C09G5.3	29	6.6
31	COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)	29	6.6
32	AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor	29	6.6
33	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	29	6.6
34	VNUA_PRVKA (P33485) Probable nuclear antigen	28	8.6
35	PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...	28	8.6
36	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	28	8.6
37	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	28	8.6
38	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	28	8.6
39	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	28	8.6
40	RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2	28	8.6
41	PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phospha...	28	8.6

>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
           precursor
          Length = 605

 Score = 35.4 bits (80), Expect = 0.070
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = -2

Query: 439 STSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRS 260
           ST+S T +T +++ +   + S  S  S  TS     + + ST  +SSS  T      I +
Sbjct: 194 STTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPIST 253

Query: 259 PTTTRSRRGLSQLSFTSARKPTA 191
            TT+ +    S  S TS+  PT+
Sbjct: 254 STTSSTSTSTSTTSPTSSSAPTS 276



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 25/85 (29%), Positives = 42/85 (49%)
 Frame = -2

Query: 439 STSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRS 260
           S++S T ST +ST+   +++S  S  S  T+     + T++T   S+S  T  P     S
Sbjct: 217 SSTSTTTSTTSSTLISTSTSS--SSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSS--S 272

Query: 259 PTTTRSRRGLSQLSFTSARKPTAPA 185
             T+ S    +  +FT+    TAP+
Sbjct: 273 APTSSSNTTPTSTTFTTTSPSTAPS 297

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>YIA_RHISP (P17986) Insertion element ISR1 hypothetical 30.8 kDa protein A|
          Length = 278

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = -2

Query: 436 TSSPTRSTQA------STVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPG 275
           T+S +R+T+A      +T A+H+        + R  +RRP V  ++T  A+S+GW    G
Sbjct: 17  TASNSRTTRAPDSEVSATSAKHSRVQL--SITVRMRKRRPSVSWSATKSATSAGWAPAAG 74

Query: 274 CGIRSPTTTRSRRGLSQLSFTSARKPTAP 188
            G R P   R RR  +      A  P  P
Sbjct: 75  HGRRVP-IARLRRAPAHRQLLVAIDPLDP 102

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 293 AGGACLHCRGGAHARSPLRGPPGPVGP 373
           AGGAC+ C  G    +   G PGP GP
Sbjct: 127 AGGACIQCPAGEAGPAGAPGAPGPAGP 153

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>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266
           S  TSSP+ ++  S+     S+S  S  S  TS   P   +  T   + +  T  P    
Sbjct: 67  STHTSSPSSTSTQSSSTAATSSSAPSTASSTTSI--PTSTSTETTTTTPTASTTTPTTTT 124

Query: 265 RSPTTTRSRRGLSQLSFTSARKPTAPAIA 179
            +PTT  +   ++  + TSA   TA A A
Sbjct: 125 AAPTTAATTTAVTTAASTSAETTTATATA 153

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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = -2

Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266
           S  TSSP+ ++  S+     S+S  S  S  TS   P   +  T   + +  T  P    
Sbjct: 67  STHTSSPSSTSTQSSSTAATSSSAPSTASSTTSI--PTSTSTETTTTTPTASTTTPTTTT 124

Query: 265 RSPTTTRSRRGLSQLSFTSARKPTAPAIA 179
            +PTT  +   ++  + TSA   TA A A
Sbjct: 125 AAPTTAATTTAVTTAASTSAETTTATATA 153

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>PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB|
          Length = 290

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +3

Query: 273 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERVGEL 434
           QP   + PE L  +  ++R HG++  ++  P      E       WRAT  A ++ +  +
Sbjct: 50  QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAM 109

Query: 435 V 437
           V
Sbjct: 110 V 110

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>PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB|
          Length = 290

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +3

Query: 273 QPGSTVQPEELASIVEAVRTHGLLSEVLQDPSDQKLAE------AWRATVDAWVERVGEL 434
           QP   + PE L  +  ++R HG++  ++  P      E       WRAT  A ++ +  +
Sbjct: 50  QPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRWRATQQAGLDTIPAM 109

Query: 435 V 437
           V
Sbjct: 110 V 110

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 239  SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            + PSG    D  +G+  P G A +    G+   +   GPPGP GP
Sbjct: 1062 AGPSGPVGKDGRSGQPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 248 SGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370
           +G + A  A G    AGGA +    G       RGPPGP G
Sbjct: 148 AGNFAAQMAGGYDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 188

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +2

Query: 251 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370
           G + A  A G    AGGA L    G       RGPPGP G
Sbjct: 108 GNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG 147

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>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = -2

Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTV-----L 281
           ++S+S+P  S+ ++T A  ASA+  S   + TS   P    +ST  +S++  T       
Sbjct: 248 TVSSSTPLTSSNSTTAATSASATS-SSAQYNTSSLLPSSTPSSTPLSSANSTTATSASST 306

Query: 280 PGCGIRSPTTTRSRRGLSQLSFTSARKPTA 191
           P   + S TTT S       S +SA   TA
Sbjct: 307 PLTSVNS-TTTTSASSTPLSSVSSANSTTA 335

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>PO2F3_HUMAN (Q9UKI9) POU domain, class 2, transcription factor 3|
           (Octamer-binding transcription factor 11) (Oct-11)
           (Transcription factor Skn-1) (PLA-1 protein)
          Length = 436

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 451 GESLSTSSPTRSTQASTVARHASASFWSDGSW 356
           G  L  SSPT S   S  A ++++SF S GSW
Sbjct: 395 GSGLHASSPTASQNNSKAAVNSASSFNSSGSW 426

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 239  SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            + PSG    D  +G   P G A +    G+   +   GPPGP GP
Sbjct: 1062 AGPSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPAGPPGPPGPPGP 1106

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
           P G   A    GE    GG  L    G +  +  +GPPGP GP
Sbjct: 582 PKGNDGAPGKNGERGGPGGPGLPGPAGKNGETGPQGPPGPTGP 624



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 233 ATSAPSGGWRADAAAGEHRPAGGACL-HCRGGAHARSPL--RGPPGPVGP 373
           A  AP GG     A GE  P G A +   RGGA    P   +GP GP GP
Sbjct: 666 APGAP-GGKGDSGAPGERGPPGTAGIPGARGGAGPPGPEGGKGPAGPPGP 714

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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 239  SAPSGGWRADAAAGEHRPAGGACLH---CRGGAHARSPLRGPPGP 364
            S+P GG +  A     RP G + L+   C G   +  P R PP P
Sbjct: 1670 SSPDGGLKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAP 1714

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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = -2

Query: 436 TSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGIRSP 257
           T+  + + + +T  R  +    +  +  T+ RRP  R+ +T   +++  T       R P
Sbjct: 76  TTEKSTTRRTTTTTRQTTTRPTTTTTTTTTTRRPTTRSTTTRHTTTTTTTT------RRP 129

Query: 256 TTTRSRRGLSQLSFTSARKPT 194
           TTT +       + T+ R+PT
Sbjct: 130 TTTTTTTRRPTTTTTTTRRPT 150

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>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 239  SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            + PSG   A   AG   PAG +     GG    + + GP GP GP
Sbjct: 945  TGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGP 989

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>COKA1_HUMAN (Q9P218) Collagen alpha-1(XX) chain precursor|
          Length = 1329

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 245  PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            P G    +  AG   P G        GA   S  RGPPG VGP
Sbjct: 1172 PKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGP 1214

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 251 GGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370
           G + A  A G    AGGA +    G       RGPPGP G
Sbjct: 109 GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAG 148

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>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1774

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
 Frame = +2

Query: 146 RPPPVTDPSL-----TSDGXXXXXXXXXXXQLA*ATSAPSGGWRADAAAGEHRPAGGACL 310
           +PPPVT P L     T D                A + P  G           P  G   
Sbjct: 725 QPPPVTSPPLAGGSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIK 784

Query: 311 HCRGGAHARSPLRGPPGPVGPK 376
               G       +GPPGP GP+
Sbjct: 785 GGMKGQKGEPGAQGPPGPAGPQ 806

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>LIPA_STRAW (Q82AP7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 328

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 266 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 162
           P   HH  + W+KP   V ++EEA+  G   ++ GP
Sbjct: 258 PSVRHHPVERWVKPHEFVELKEEAEEIGFSGVMSGP 293

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>LIPA_STRCO (Q9S2P2) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 317

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 266 PLANHHSEQTWLKP-AVVHVREEADGAGHRWLVRGP 162
           P   HH  + W+KP   V ++EEA+  G   ++ GP
Sbjct: 258 PSVRHHPVERWVKPQEFVELKEEAEQIGFSGVMSGP 293

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>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region|
          Length = 132

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
 Frame = -2

Query: 436 TSSPTRSTQASTVARHASASFWSDGSWRT-------SERRPCVRTASTMEASSSGWTVLP 278
           TS  T     S++A  +SAS W+  +W+T       +  R   R+ ++M ++SS  +  P
Sbjct: 38  TSFVTSVPATSSIANGSSASSWAIRAWKTTWSRTSPNSSRSSPRSPASMASTSSYISSTP 97

Query: 277 ----GCGIRSPTTTRSRRGLSQLSFTSARK 200
                  +R      +RR  S  S TS+R+
Sbjct: 98  YLTRSWWVRRALHGHARRIRSMTSTTSSRR 127

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>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 233  ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            A   P  G      AG   P GG  +   GGA  R     PPG  GP
Sbjct: 1075 APGGPGRGGAPPPGAGRAGPPGGRGMPAPGGAAPRGRGAPPPGAGGP 1121

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>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like|
           domain-containing protein 3) (Multiple EGF-like domain
           protein 3) (Fragment)
          Length = 656

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 254 GWRADAAAGE-HRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
           GW  +A A   H P G +C H  G  H       PPG  GP
Sbjct: 251 GWFGEACAQRCHCPPGASCHHVSGECHC------PPGFTGP 285

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>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19|
           precursor (Toxicity and JNK inducer) (TRADE)
          Length = 416

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -2

Query: 310 EASSSGWTVLPGCGIRSPTTTRSRRGLS 227
           EA SS   VL GCG+RSPTT + R   S
Sbjct: 258 EARSSARAVL-GCGLRSPTTLQERNPAS 284

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
           P G   A    GE  P G        G +    L GPPGP GP
Sbjct: 582 PKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVGLPGPPGPAGP 624



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 245  PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            P+G   A   AGE    G        G+   S  RGPPGP GP
Sbjct: 906  PAGNNGAPGKAGERGFQGPLGPQGAIGSPGASGARGPPGPAGP 948

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>EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 444

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +2

Query: 317 RGGAHARSP--LRGPPGPVGP 373
           +GG  ++SP  +RGPPGP GP
Sbjct: 208 KGGTDSQSPVRIRGPPGPQGP 228

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 245  PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            PSG   A   AG   P G A      GA  +  L G PGP+GP
Sbjct: 1131 PSG---ASGPAGPRGPPGSA------GAPGKDGLNGLPGPIGP 1164

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>YQ33_CAEEL (Q09233) Putative cuticle collagen C09G5.3|
          Length = 283

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 266 DAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVG 370
           +  A   +PA G C+ C  G       RGPPGP G
Sbjct: 120 NGGAALDQPADGTCIKCPPGP------RGPPGPQG 148

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>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)|
          Length = 329

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 290 PAGGACLHCRGGAHARSPLRGPPGPVGPK 376
           PA   C+ C  GA       GP GP GPK
Sbjct: 178 PASEPCIICPTGAPGPMGAMGPKGPPGPK 206

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>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 23/84 (27%), Positives = 36/84 (42%)
 Frame = -2

Query: 445 SLSTSSPTRSTQASTVARHASASFWSDGSWRTSERRPCVRTASTMEASSSGWTVLPGCGI 266
           S STS  + ST +S  +  +S++  S  S  TS        +ST  +SSS  T       
Sbjct: 223 STSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKST 282

Query: 265 RSPTTTRSRRGLSQLSFTSARKPT 194
            + +T+ S    S     ++  PT
Sbjct: 283 SASSTSTSSYSTSTSPSLTSSSPT 306

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 245  PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            PSG   A   AG   P G A      GA  +  L G PGP+GP
Sbjct: 1120 PSG---ASGPAGPRGPPGSA------GAAGKDGLNGLPGPIGP 1153

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 25/70 (35%)
 Frame = +2

Query: 236  TSAPSGGWRADAAAGEHRPAGGA--------CLHC-----------------RGGAHARS 340
            T+ PSGG  A AA    RP GG         C  C                 R G   R 
Sbjct: 1581 TAVPSGGGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRCWLCWWRRGPRPRRRPGLTDRV 1640

Query: 341  PLRGPPGPVG 370
            P RG P P G
Sbjct: 1641 PPRGGPSPRG 1650

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>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 233 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 367
           A +A  GG   D A     P+GG      G A   +P   PPGP+
Sbjct: 23  AAAAAEGGRCPDPALSAAAPSGGN----GGAAREEAPCEAPPGPL 63

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 245 PSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
           P G   A    GE    GG       G +  +  +GPPGP GP
Sbjct: 427 PKGNDGAPGKNGERGGPGGPGPQGPAGKNGETGPQGPPGPTGP 469

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1516

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 290  PAGGACLHCRGGAHARSPLRGPPGPVG 370
            P GGA    + GA      RGPPGP G
Sbjct: 951  PDGGALGPAQKGAKGEPGFRGPPGPYG 977

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 263  ADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGPK 376
            A  A G H P G A  H   G    S   GP G VGP+
Sbjct: 959  AAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR 996

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 239  SAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
            + PSG    D   G+    G A +    G+   +   GPPGP GP
Sbjct: 1056 AGPSGPAGKDGRTGQPGTVGPAGIRGSQGSQGPAGPPGPPGPPGP 1100

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>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2|
          Length = 277

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 254 GWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPVGP 373
           GWR         P    C H  GG   RSP+ G P PV P
Sbjct: 215 GWRPTVRGSVMNP----CDHPHGGGEGRSPI-GRPSPVTP 249

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>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC|
           3.1.3.16) (Pleckstrin homology domain-containing family
           E protein 1) (Suprachiasmatic nucleus circadian
           oscillatory protein)
          Length = 1696

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 233 ATSAPSGGWRADAAAGEHRPAGGACLHCRGGAHARSPLRGPPGPV 367
           A +A  GG   D+      P+GG      G A   +P   PPGP+
Sbjct: 24  AAAAAEGGRSPDSVLSAAAPSGGN----GGAAREEAPCEAPPGPL 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,446,923
Number of Sequences: 219361
Number of extensions: 1030437
Number of successful extensions: 5652
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5519
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result