ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl19e08 |
|---|---|
| Clone Library Name | barley_pub |
>HPS1_HUMAN (Q92902) Hermansky-Pudlak syndrome 1 protein| Length = 700 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 194 AFSSPAEYFTDAAPIGNGSLGAMVW---GGVSSDKLQLNHDTLWTGVP 328 +FS P EYFT A G+ S G+ +W G D LQ+ DTL T VP Sbjct: 293 SFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVP 340
>HPS1_MACFA (Q60HF3) Hermansky-Pudlak syndrome 1 protein homolog| Length = 667 Score = 37.0 bits (84), Expect = 0.026 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +2 Query: 194 AFSSPAEYFTDAAPIGNGSLGAMVW---GGVSSDKLQLNHDTLWTGVP 328 +FS P EYFT A G+ S G+ +W G + LQ+ DTL T VP Sbjct: 260 SFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMEALQIAEDTLQTLVP 307
>HPS1_MOUSE (O08983) Hermansky-Pudlak syndrome 1 protein homolog| Length = 704 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 194 AFSSPAEYFTDAAPIGNGSLGAMVW---GGVSSDKLQLNHDT 310 + S P EYFT A G+ S G++VW G SD LQ+ DT Sbjct: 297 SISLPEEYFTPAPSPGDQSSGSLVWLDGGTPPSDALQMAEDT 338
>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = -3 Query: 450 TSDSPPKRPLAEAVAS-ANLPWSTNPLTSARTPGAFGSV*FPGTPXXXXXXXXXXXXXET 274 T++SPP RP +AS P +T+ +T+A+ PGTP Sbjct: 131 TTESPPSRPAPTTLASTVGQPPTTSVVTTAQASST------PGTPTAESPDRSSNSSGVP 184 Query: 273 P--PQTMAPRLPLP 238 P P T AP P P Sbjct: 185 PTAPVTEAPTSPPP 198
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +3 Query: 342 TQRRRVFLQR*GDWSTKEGSPT--PRLQPRAFSVD 440 TQR + Q+ G WS ++G PT P QP + SV+ Sbjct: 2033 TQRAQEMFQKTGTWSPEQGPPTDMPNSQPNSQSVE 2067
>CATB2_ACILW (O33949) Muconate cycloisomerase 1-2 (EC 5.5.1.1) (Muconate| cycloisomerase I 2) (Cis,cis-muconate lactonizing enzyme I 2) (MLE 2) Length = 385 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = +2 Query: 236 IGNGS-LGAMVWGGVSSDKLQLNHDTLWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADAT 412 +G G+ +G + +G S + +++N DT + + + +A +RGL RFA + Sbjct: 50 VGEGTTIGGLAYGEESPESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFARSA 109 Query: 413 ASAKGLFGGLSEVYQPLGEL 472 + PL EL Sbjct: 110 VETALFDAQAQRLGVPLSEL 129
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.6 bits (65), Expect = 4.1 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Frame = +2 Query: 203 SPAEYFTDAAPIGNGSLGAMVWGGVSSDKLQLNHDTLWTGVPGNYTDPKAPGVLAE-VRG 379 SP + AAP G+G G G SS + + +G PG T + G L++ G Sbjct: 1048 SPFTFGGSAAPAGSGGFGLSATPGTSSTSGTFSFGSGQSGTPGTTT---SFGSLSQNTLG 1104 Query: 380 LVDQGR-FA---DATASAKGLFGGLS 445 QG FA +T +K +FGG S Sbjct: 1105 APSQGSPFAFSVGSTPESKPVFGGTS 1130
>ATPBM_CHLRE (P38482) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 574 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +2 Query: 311 LWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADATASAKGLFGGLSEVYQPLGEL 472 ++TG PG Y D K ++ G++ QG++ D A + GG+ EV + +L Sbjct: 452 VFTGTPGKYVDLK--DTISAFTGIL-QGKYDDLPEMAFYMVGGIHEVVEKADKL 502
>ATPBM_ACTCH (P43395) ATP synthase beta chain, mitochondrial (EC 3.6.3.14)| (PKIWI505) (Fragment) Length = 173 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +2 Query: 311 LWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADATASAKGLFGGLSEV 451 ++TG PG Y D K + +G++D G+F D + + GG+ EV Sbjct: 117 VFTGAPGKYVDLKES--ITSFQGVLD-GKFDDLPEQSFYMVGGIEEV 160
>ATPBO_ARATH (Q9C5A9) ATP synthase beta chain 3, mitochondrial precursor (EC| 3.6.3.14) Length = 559 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 311 LWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADATASAKGLFGGLSEV 451 ++TG PG Y D K + +GL+D G++ D + + + GG+ EV Sbjct: 503 IFTGAPGKYVDLKEN--INSFQGLLD-GKYDDLSEQSFYMVGGIDEV 546
>ATPBN_ARATH (P83484) ATP synthase beta chain 2, mitochondrial precursor (EC| 3.6.3.14) Length = 556 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 311 LWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADATASAKGLFGGLSEV 451 ++TG PG Y D K + +GL+D G++ D + + + GG+ EV Sbjct: 500 IFTGAPGKYVDLKEN--INSFQGLLD-GKYDDLSEQSFYMVGGIDEV 543
>ATPBM_ARATH (P83483) ATP synthase beta chain 1, mitochondrial precursor (EC| 3.6.3.14) Length = 556 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 311 LWTGVPGNYTDPKAPGVLAEVRGLVDQGRFADATASAKGLFGGLSEV 451 ++TG PG Y D K + +GL+D G++ D + + + GG+ EV Sbjct: 500 IFTGAPGKYVDLKEN--INSFQGLLD-GKYDDLSEQSFYMVGGIDEV 543
>Y3394_RHOPA (P61471) UPF0161 protein RPA3394| Length = 129 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/42 (33%), Positives = 17/42 (40%) Frame = -1 Query: 452 IPQTVHRKGPWLKPWRRRTFLGRPIPSPLQEHPAPLGRCSSL 327 +PQT + W PWR + G P P P G S L Sbjct: 85 VPQTAPSRARWYLPWRYARWRGVNAPPPDVAEPCGCGSHSQL 126
>SYG_CORGL (Q8NNC6) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 461 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +2 Query: 317 TGVPGNYTDPKA-PGVLAEVRGLVD--QGRFADATASAKGLFGGLSEV 451 TG PGN+T+PKA G+L G VD +G +A+G+F V Sbjct: 128 TGQPGNWTEPKAFSGLLKTFLGPVDDEEGLHYLRPETAQGIFVNFKNV 175
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 257 AMVWGGVSSDKLQLNHDTLWTGVPGNYT 340 A+V GG++ D L+ H +W GV G+ T Sbjct: 89 AIVDGGINPDSLRGTHTGVWVGVSGSET 116
>LMO7_HUMAN (Q8WWI1) LIM domain only protein 7 (LOMP) (F-box only protein 20)| Length = 1683 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = -3 Query: 471 NSPRGWYTSDSPP--KRPLAEAVASANLPWSTNPLTSARTPGAFGSV 337 N P G+Y S S RP + V+++N + NP +S P A GSV Sbjct: 1529 NQPTGFYASSSVQDFSRPPPQLVSTSNRAYMRNPSSSVPPPSA-GSV 1574
>ZHX1_HUMAN (Q9UKY1) Zinc fingers and homeoboxes protein 1| Length = 873 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 322 RARELHRPKGAGCSCRGEGIGRPRKVRRRHGFSQGP 429 R R RPKG G RG GRPR +R + + +GP Sbjct: 741 RKRGRGRPKGRG---RGRPRGRPRGSKRINNWDRGP 773 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,674,703 Number of Sequences: 219361 Number of extensions: 1234520 Number of successful extensions: 4074 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4073 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
