ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19e07 |
|---|---|
| Clone Library Name | barley_pub |
>Y3523_METJA (Q60282) Hypothetical protein MJECL23| Length = 827 Score = 32.3 bits (72), Expect = 0.62 Identities = 17/75 (22%), Positives = 38/75 (50%) Frame = +3 Query: 231 KSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSLSAGKYVVTLSSGGSILR 410 K + +++L N + +LD+++G+ W + +E N +D L + +V L G + Sbjct: 99 KDIKDNIIILGCSNHLFALDIKTGNKIWEYKVEHN--VDSLFIKDN--IVMLEYRGGHVC 154 Query: 411 AWNLPDGQMVWETNI 455 ++ G +WE+ + Sbjct: 155 VLDVMTGDKIWESKV 169 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +3 Query: 258 LTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSLSAGKYVVTLSSGGSILRAWNLPDGQM 437 + EE +LD+ +G WR I+ D SLS +V L + A ++ G M Sbjct: 566 ILEEGYAYALDINTGREIWRSKIKH----DVRSLSIKDDIVVLGCKKGYILALDINAGNM 621 Query: 438 VWE 446 +WE Sbjct: 622 LWE 624
>ATG18_CRYNE (Q5KGQ2) Autophagy-related protein 18| Length = 423 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 339 PIDQLSL-SAGKYVVTLSSGGSILRAWNLPDGQMVWETNIQTSS 467 PI L+L S G + T S G+++R +++PD + +W+ +SS Sbjct: 204 PIAALALNSTGTMLATASDKGTVVRVFSVPDAKKLWQFRRGSSS 247
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 282 SLDLRSGDIFWRHVIEKNNPIDQLSLSAGKYVVTLSSGGSILRAWNLPDGQMVWE-TNIQ 458 +LD R G WR ++ + + L G V+T + GG + +AW GQ +WE T Q Sbjct: 493 ALDAREGADLWR--VQTDAWVYSLQADRGT-VLTATRGGGV-QAWEASAGQKLWEVTGAQ 548 Query: 459 T 461 T Sbjct: 549 T 549
>BTNL2_MOUSE (O70355) Butyrophilin-like protein 2 precursor (Fragment)| Length = 452 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Frame = -2 Query: 450 WFPRPSVHQED----SMPSIYYLPKKG*QHIFQLID*ADQWGYSSQ*HVAKIYLLNEDQE 283 WFPRP V D +MPS ++G Q +FQ ++ S +V L QE Sbjct: 386 WFPRPHVQWRDRDGKTMPSFSEAFQQGSQELFQ-VETLLLVTNGSMVNVTCSISLPLGQE 444 Query: 282 KRSHFPLS 259 K + FPLS Sbjct: 445 KTARFPLS 452
>SYIM_MOUSE (Q8BIJ6) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) Length = 1012 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/67 (22%), Positives = 30/67 (44%) Frame = +3 Query: 216 VYHTQKSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSLSAGKYVVTLSSG 395 V+H + + T E++I ++ D++W E+ P + L+ + G + + G Sbjct: 534 VFHHKTKDEYLINSQTTEHIIKLVEQHGSDVWWTLPAEQLLPAEVLAQAGGPGALEYAPG 593 Query: 396 GSILRAW 416 IL W Sbjct: 594 QDILDIW 600
>RNC_MYCGE (P47607) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 262 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +3 Query: 213 AVYHTQKSGRRRV-VVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSL 359 +++ QK RV V LT N++ S+ GDI W I N D S+ Sbjct: 168 SLFQEQKLPEPRVRVSLTSNNLVLSIIELDGDIIWSQAIPNNKNYDDKSV 217
>APN1_CAEEL (Q10002) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (AP endonuclease) (Apurinic-apyrimidinic endonuclease) Length = 396 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +3 Query: 180 WHQKYIGKVKQAVYHTQKSGRRRVVVLTEENVIASLDLRSGDI---FWRHVIEKNNPIDQ 350 +H G ++QA+Y+ + G R + + S ++ +W+ V E N P+DQ Sbjct: 122 FHVSAAGGLEQAIYNARAEGCRSFAMFVRNQRTWNHKPMSEEVVENWWKAVRETNFPLDQ 181 Query: 351 LSLSAGKYVVTLSS 392 + + G Y++ S Sbjct: 182 I-VPHGSYLMNAGS 194
>DYIN_DROME (Q24246) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic| dynein intermediate chain) (Protein short wing) Length = 663 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 17/98 (17%) Frame = +3 Query: 180 WHQKYIGKVKQAVYHTQKSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNNPIDQLSL 359 W+ K+ + V+H Q + N+I + W + ++K PI + L Sbjct: 350 WNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPL 409 Query: 360 SAGKY-----------------VVTLSSGGSILRAWNL 422 SA + V+++SS G L +W+L Sbjct: 410 SAAAHTHPVYCLQMVGTQNAHNVISISSDGK-LCSWSL 446
>YDEH_ECOLI (P31129) Hypothetical protein ydeH| Length = 296 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +3 Query: 195 IGKVKQAVYHTQKSGRRRVVVLTEENVI 278 IG+ +A+Y +++GR R + + E+NVI Sbjct: 266 IGRADRAMYEGKQTGRNRCMFIDEQNVI 293
>S3TC2_MOUSE (Q80VA5) SH3 domain and tetratricopeptide repeats-containing| protein 2 Length = 1289 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +3 Query: 267 ENVIASLDLRSGDIFWRHVIEKNNPIDQ----LSLSAGKYVVTLSSGGSILRAWNLPDGQ 434 EN+ L L+ G F R V P D+ L+L + + LS G S A +L GQ Sbjct: 166 ENIYLGLLLQEGHFFCRAVCSVAQPADKEGEYLTLCKNELISVLSGGESECEAMSLVTGQ 225
>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 315 AKIYLLNEDQEKRSHFPLSRPQHASSHSSE 226 A ++L+ E SH PL +P H SHS + Sbjct: 184 AFLHLIPHALEPHSHHPLEQPGHGHSHSGQ 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,011,411 Number of Sequences: 219361 Number of extensions: 974509 Number of successful extensions: 2809 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2807 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
