Clone Name | bastl19e01 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188528.1| Oryza sativa (japonica cultivar-group), Ozsa8197 predicted mRNA Length = 2442 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 299 acggacaccatcctccccggcgagggcatctccggtaacgagac 342 |||||||||||||||||||||||| ||||| |||| ||| |||| Sbjct: 181 acggacaccatcctccccggcgagagcatcaccgggaaccagac 224
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 299 acggacaccatcctccccggcgagggcatctccggtaacgagac 342 |||||||||||||||||||||||| ||||| |||| ||| |||| Sbjct: 6786316 acggacaccatcctccccggcgagagcatcaccgggaaccagac 6786359 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 365 ttcgagctgggcttcttttccccaggccccggcatccactacttcttgggtgtccggct 423 |||||||| || ||||| |||| ||| ||||||||||||||||| | || |||||||| Sbjct: 6792095 ttcgagctcgggttcttcaccccgggctccggcatccactacttcctcggcgtccggct 6792037
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 299 acggacaccatcctccccggcgagggcatctccggtaacgagac 342 |||||||||||||||||||||||| ||||| |||| ||| |||| Sbjct: 138468 acggacaccatcctccccggcgagagcatcaccgggaaccagac 138511 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 365 ttcgagctgggcttcttttccccaggccccggcatccactacttcttgggtgtccggct 423 |||||||| || ||||| |||| ||| ||||||||||||||||| | || |||||||| Sbjct: 144247 ttcgagctcgggttcttcaccccgggctccggcatccactacttcctcggcgtccggct 144189
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 299 acggacaccatcctccccggcgagggcatctccggtaacgagac 342 |||||||||||||||||||||||| ||||| |||| ||| |||| Sbjct: 68377 acggacaccatcctccccggcgagagcatcaccgggaaccagac 68420 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Minus Query: 365 ttcgagctgggcttcttttccccaggccccggcatccactacttcttgggtgtccggct 423 |||||||| || ||||| |||| ||| ||||||||||||||||| | || |||||||| Sbjct: 74156 ttcgagctcgggttcttcaccccgggctccggcatccactacttcctcggcgtccggct 74098
>dbj|AK101712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060M08, full insert sequence Length = 2638 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 299 acggacaccatcctccccggcgagggcatctccggtaacgagac 342 |||||||||||||||||||||||| ||||| |||| ||| |||| Sbjct: 224 acggacaccatcctccccggcgagagcatcaccgggaaccagac 267
>ref|NM_188529.1| Oryza sativa (japonica cultivar-group), Ozsa8198 predicted mRNA Length = 2349 Score = 46.1 bits (23), Expect = 0.095 Identities = 50/59 (84%) Strand = Plus / Plus Query: 365 ttcgagctgggcttcttttccccaggccccggcatccactacttcttgggtgtccggct 423 |||||||| || ||||| |||| ||| ||||||||||||||||| | || |||||||| Sbjct: 157 ttcgagctcgggttcttcaccccgggctccggcatccactacttcctcggcgtccggct 215
>dbj|AB190300.1| Artemia franciscana Af2cad mRNA for Af2-cadherin, complete cds Length = 9338 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 22 ctctgaatttctgaagcttgct 43 |||||||||||||||||||||| Sbjct: 6431 ctctgaatttctgaagcttgct 6410
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 gcgcgccaatggcggcggcga 101 ||||||||||||||||||||| Sbjct: 180266 gcgcgccaatggcggcggcga 180246
>emb|CR954286.2|RP43001A02 Pan troglodytes chromosome X BAC RP43-001A02, complete sequence Length = 186572 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aaaagaactgcaaactagtag 21 ||||||||||||||||||||| Sbjct: 76077 aaaagaactgcaaactagtag 76097
>emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chromosome 10, complete sequence Length = 163861 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 tttctcttcctcctgctcatt 268 ||||||||||||||||||||| Sbjct: 72718 tttctcttcctcctgctcatt 72738
>gb|AC079864.22| Homo sapiens Xp BAC RP11-662G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161874 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aaaagaactgcaaactagtag 21 ||||||||||||||||||||| Sbjct: 20227 aaaagaactgcaaactagtag 20247
>gb|AF214529.1|AF214528S2 Homo sapiens dystrophin (DMD) gene, intron 51, partial sequence Length = 19340 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aaaagaactgcaaactagtag 21 ||||||||||||||||||||| Sbjct: 7154 aaaagaactgcaaactagtag 7134
>emb|CT485784.2| RP43-026J01, complete sequence Length = 201375 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aaaagaactgcaaactagtag 21 ||||||||||||||||||||| Sbjct: 184381 aaaagaactgcaaactagtag 184401
>ref|NM_124142.2| Arabidopsis thaliana unknown protein AT5G47680 mRNA, complete cds Length = 2336 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cgcgccaatggcggcggcgacggg 105 |||| ||||||||||||||||||| Sbjct: 49 cgcggcaatggcggcggcgacggg 72
>gb|AY805005.1| Drosophila yakuba isolate 1250_2 Xdh (Xdh) gene, partial cds Length = 782 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ccacttcgttcctctgaagg 170 |||||||||||||||||||| Sbjct: 386 ccacttcgttcctctgaagg 367
>gb|AY804993.1| Drosophila yakuba isolate SaoT_2 Xdh (Xdh) gene, partial cds Length = 782 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ccacttcgttcctctgaagg 170 |||||||||||||||||||| Sbjct: 386 ccacttcgttcctctgaagg 367
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 cgcggcgcgccaatggcggcggcg 100 |||||||||||||| ||||||||| Sbjct: 1023493 cgcggcgcgccaatcgcggcggcg 1023516
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttggccgcgtctgccacca 299 |||||||||||||||||||| Sbjct: 1475875 cttggccgcgtctgccacca 1475856
>gb|AC142330.1| Pan troglodytes BAC clone RP43-25K18 from 7, complete sequence Length = 187596 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tgaagcttgctgaactggag 52 |||||||||||||||||||| Sbjct: 175047 tgaagcttgctgaactggag 175028
>emb|AL445251.4| Human DNA sequence from clone RP11-704L16 on chromosome 10 Contains the 5' end of the HPSE2 gene for heparanase 2 and a CpG island, complete sequence Length = 123482 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tatttctcttcctcctgctc 265 |||||||||||||||||||| Sbjct: 58695 tatttctcttcctcctgctc 58714
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 ccagtggcggctgcgcagcg 199 |||||||||||||||||||| Sbjct: 898812 ccagtggcggctgcgcagcg 898793
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 cgcggcgcgccaatggcggcggcg 100 |||||||||||||| ||||||||| Sbjct: 1840311 cgcggcgcgccaatcgcggcggcg 1840334
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cggcctctccccagccaaac 233 |||||||||||||||||||| Sbjct: 808159 cggcctctccccagccaaac 808140
>gb|AC018521.8| Homo sapiens chromosome 17, clone RP11-6N17, complete sequence Length = 143494 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 ccaccacggacaccatcctccccg 317 |||||||||||||| ||||||||| Sbjct: 74974 ccaccacggacaccctcctccccg 74951
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gcgcgccaatggcggcggcg 100 |||||||||||||||||||| Sbjct: 1240221 gcgcgccaatggcggcggcg 1240240
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 caccatcctccccggcgagg 323 |||||||||||||||||||| Sbjct: 15881446 caccatcctccccggcgagg 15881465
>gb|AC104809.5| Homo sapiens BAC clone RP11-637O3 from 2, complete sequence Length = 167196 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cagccccggcctctccccag 227 |||||||||||||||||||| Sbjct: 130727 cagccccggcctctccccag 130746
>gb|AY085531.1| Arabidopsis thaliana clone 15623 mRNA, complete sequence Length = 1281 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cgcgccaatggcggcggcgacggg 105 |||| ||||||||||||||||||| Sbjct: 49 cgcggcaatggcggcggcgacggg 72
>gb|BT002419.1| Arabidopsis thaliana putative protein (At5g47680) mRNA, complete cds Length = 1231 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cgcgccaatggcggcggcgacggg 105 |||| ||||||||||||||||||| Sbjct: 30 cgcggcaatggcggcggcgacggg 53
>emb|BX813305.2| Mouse DNA sequence from clone RP23-137E6 on chromosome 2, complete sequence Length = 39991 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tccactacttcttgggtgtc 418 |||||||||||||||||||| Sbjct: 38446 tccactacttcttgggtgtc 38427
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 caccatcctccccggcgagg 323 |||||||||||||||||||| Sbjct: 44572 caccatcctccccggcgagg 44591
>dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7 Length = 80117 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 cgcgccaatggcggcggcgacggg 105 |||| ||||||||||||||||||| Sbjct: 77417 cgcggcaatggcggcggcgacggg 77394
>gb|AC000365.1|HSAC000365 Human cosmid g1862x042, complete sequence Length = 44081 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tgaagcttgctgaactggag 52 |||||||||||||||||||| Sbjct: 5994 tgaagcttgctgaactggag 6013
>dbj|AK107237.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F01, full insert sequence Length = 1922 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 caccatcctccccggcgagg 323 |||||||||||||||||||| Sbjct: 1467 caccatcctccccggcgagg 1486
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ctgcgcagcgcgttcgctca 209 |||||||||||||||||||| Sbjct: 606267 ctgcgcagcgcgttcgctca 606286
>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete sequence Length = 241148 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tatttctcttcctcctgctc 265 |||||||||||||||||||| Sbjct: 146205 tatttctcttcctcctgctc 146224
>emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on chromosome 2, complete sequence Length = 179754 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tccactacttcttgggtgtc 418 |||||||||||||||||||| Sbjct: 455 tccactacttcttgggtgtc 436
>emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chromosome 2, complete sequence Length = 222451 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ttctcttcctcctgctcatt 268 |||||||||||||||||||| Sbjct: 134999 ttctcttcctcctgctcatt 134980
>emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chromosome X, complete sequence Length = 218939 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gtatttctcttcctcctgct 264 |||||||||||||||||||| Sbjct: 148368 gtatttctcttcctcctgct 148387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,711,035 Number of Sequences: 3902068 Number of extensions: 3711035 Number of successful extensions: 86232 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85698 Number of HSP's gapped (non-prelim): 534 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)