Clone Name | bastl19d10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cgccggccgcctcccgccgcg 203 ||||||||||||||||||||| Sbjct: 597 cgccggccgcctcccgccgcg 617
>ref|XM_322288.1| Neurospora crassa OR74A hypothetical protein (NCU00203.1) partial mRNA Length = 1239 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 199 ccgcgacgaccctgcccggccccgcggctgctc 231 |||| ||||||||||||||| ||| |||||||| Sbjct: 92 ccgccacgaccctgcccggcgccgtggctgctc 124
>ref|XM_951495.1| Neurospora crassa OR74A hypothetical protein (NCU00203.1) partial mRNA Length = 1239 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 199 ccgcgacgaccctgcccggccccgcggctgctc 231 |||| ||||||||||||||| ||| |||||||| Sbjct: 92 ccgccacgaccctgcccggcgccgtggctgctc 124
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 cgcgacgaccctgcccggccccgcg 224 |||||||||||||||||||| |||| Sbjct: 1895975 cgcgacgaccctgcccggccacgcg 1895999
>gb|AC121982.3| Mus musculus BAC clone RP24-291D6 from chromosome 6, complete sequence Length = 167409 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 245 tcttccttctcctccgccctcactcctct 273 ||||||||||||||| ||||| ||||||| Sbjct: 74421 tcttccttctcctcccccctccctcctct 74393
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cgccggccgcctcccgccgcg 203 ||||||||||||||||||||| Sbjct: 5818846 cgccggccgcctcccgccgcg 5818826
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 cgccggccgcctcccgccgcg 203 ||||||||||||||||||||| Sbjct: 48648 cgccggccgcctcccgccgcg 48628
>ref|NM_192601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 366 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 ccaccgccggccacctccgatctc 395 ||||||||||||||||| |||||| Sbjct: 67 ccaccgccggccacctcggatctc 90
>ref|XM_424570.1| PREDICTED: Gallus gallus similar to 2310047H23Rik protein (LOC426960), mRNA Length = 784 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 cactcctctccgccggccaccgcc 288 |||||||||||||||||| ||||| Sbjct: 278 cactcctctccgccggccgccgcc 255
>ref|XM_414627.1| PREDICTED: Gallus gallus similar to 2310047H23Rik protein (LOC416310), mRNA Length = 1125 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 cactcctctccgccggccaccgcc 288 |||||||||||||||||| ||||| Sbjct: 278 cactcctctccgccggccgccgcc 255
>ref|XM_750574.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g13340) partial mRNA Length = 942 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cttccttctcctccgccctc 265 |||||||||||||||||||| Sbjct: 100 cttccttctcctccgccctc 119
>ref|NM_001038145.1| Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA Length = 3356 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ccgccccaccgccggccacc 386 |||||||||||||||||||| Sbjct: 633 ccgccccaccgccggccacc 614
>gb|BC108098.1| Bos taurus cDNA clone MGC:127973 IMAGE:7962488, complete cds Length = 3356 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ccgccccaccgccggccacc 386 |||||||||||||||||||| Sbjct: 633 ccgccccaccgccggccacc 614
>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence Length = 22437 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ccgccccaccgccggccacc 386 |||||||||||||||||||| Sbjct: 7136 ccgccccaccgccggccacc 7155
>ref|NM_132797.2| Drosophila melanogaster shattered CG9198-RA, transcript variant A (shtd), mRNA Length = 6380 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ctcttcactccaccgaccat 313 |||||||||||||||||||| Sbjct: 4223 ctcttcactccaccgaccat 4204
>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone BACR36D15, complete sequence Length = 159513 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ctcttcactccaccgaccat 313 |||||||||||||||||||| Sbjct: 95073 ctcttcactccaccgaccat 95092
>emb|CR354062.1| Gallus gallus finished cDNA, clone ChEST374p8 Length = 629 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ctgcccggccccgcggctgc 229 |||||||||||||||||||| Sbjct: 119 ctgcccggccccgcggctgc 138
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 ccaccgccggccacctccgatctc 395 ||||||||||||||||| |||||| Sbjct: 23236069 ccaccgccggccacctcggatctc 23236092
>gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complete sequence Length = 119794 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 245 tcttccttctcctccgccctcactcctc 272 ||||||||||||||| ||| |||||||| Sbjct: 30574 tcttccttctcctcctcccccactcctc 30547
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 ccaccgccggccacctccgatctc 395 ||||||||||||||||| |||||| Sbjct: 22811 ccaccgccggccacctcggatctc 22834
>ref|XM_317470.2| Anopheles gambiae str. PEST ENSANGP00000012304 (ENSANGG00000009815), partial mRNA Length = 4083 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gccggccaccgcccgctcct 295 |||||||||||||||||||| Sbjct: 2973 gccggccaccgcccgctcct 2954
>dbj|AK069058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I01, full insert sequence Length = 1395 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 ccaccgccggccacctccgatctc 395 ||||||||||||||||| |||||| Sbjct: 42 ccaccgccggccacctcggatctc 65
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 tcctccgccctcactcctctccgc 277 |||||||||||| ||||||||||| Sbjct: 959144 tcctccgccctctctcctctccgc 959121
>gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 of 74 of the complete sequence Length = 300896 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ctcttcactccaccgaccat 313 |||||||||||||||||||| Sbjct: 52971 ctcttcactccaccgaccat 52990
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 ccggtcgccgccgttcctccacca 165 |||||| ||||||||||||||||| Sbjct: 3291321 ccggtcaccgccgttcctccacca 3291298
>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete sequence Length = 36905 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tctccgccggccaccgcccg 290 |||||||||||||||||||| Sbjct: 4089 tctccgccggccaccgcccg 4070 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,161,086 Number of Sequences: 3902068 Number of extensions: 3161086 Number of successful extensions: 71158 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70918 Number of HSP's gapped (non-prelim): 240 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)