ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464548.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
2ref|XM_322288.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
3ref|XM_951495.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.5
4gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.5
5gb|AC121982.3| Mus musculus BAC clone RP24-291D6 from chromosome... 42 1.5
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
7dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
8ref|NM_192601.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
9ref|XM_424570.1| PREDICTED: Gallus gallus similar to 2310047H23R... 40 6.0
10ref|XM_414627.1| PREDICTED: Gallus gallus similar to 2310047H23R... 40 6.0
11ref|XM_750574.1| Aspergillus fumigatus Af293 hypothetical protei... 40 6.0
12ref|NM_001038145.1| Bos taurus solute carrier family 25 (mitocho... 40 6.0
13gb|BC108098.1| Bos taurus cDNA clone MGC:127973 IMAGE:7962488, c... 40 6.0
14gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid ... 40 6.0
15ref|NM_132797.2| Drosophila melanogaster shattered CG9198-RA, tr... 40 6.0
16gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, re... 40 6.0
17emb|CR354062.1| Gallus gallus finished cDNA, clone ChEST374p8 40 6.0
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
19gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complet... 40 6.0
20dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
21ref|XM_317470.2| Anopheles gambiae str. PEST ENSANGP00000012304 ... 40 6.0
22dbj|AK069058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
23emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.0
24gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 ... 40 6.0
25gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.0
26gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis g... 40 6.0

>ref|XM_464548.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 183 cgccggccgcctcccgccgcg 203
           |||||||||||||||||||||
Sbjct: 597 cgccggccgcctcccgccgcg 617



to top

>ref|XM_322288.1| Neurospora crassa OR74A hypothetical protein (NCU00203.1) partial
           mRNA
          Length = 1239

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 199 ccgcgacgaccctgcccggccccgcggctgctc 231
           |||| ||||||||||||||| ||| ||||||||
Sbjct: 92  ccgccacgaccctgcccggcgccgtggctgctc 124



to top

>ref|XM_951495.1| Neurospora crassa OR74A hypothetical protein (NCU00203.1) partial
           mRNA
          Length = 1239

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 199 ccgcgacgaccctgcccggccccgcggctgctc 231
           |||| ||||||||||||||| ||| ||||||||
Sbjct: 92  ccgccacgaccctgcccggcgccgtggctgctc 124



to top

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 200     cgcgacgaccctgcccggccccgcg 224
               |||||||||||||||||||| ||||
Sbjct: 1895975 cgcgacgaccctgcccggccacgcg 1895999



to top

>gb|AC121982.3| Mus musculus BAC clone RP24-291D6 from chromosome 6, complete sequence
          Length = 167409

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 245   tcttccttctcctccgccctcactcctct 273
             ||||||||||||||| ||||| |||||||
Sbjct: 74421 tcttccttctcctcccccctccctcctct 74393



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 183     cgccggccgcctcccgccgcg 203
               |||||||||||||||||||||
Sbjct: 5818846 cgccggccgcctcccgccgcg 5818826



to top

>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0544H11
          Length = 178376

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   cgccggccgcctcccgccgcg 203
             |||||||||||||||||||||
Sbjct: 48648 cgccggccgcctcccgccgcg 48628



to top

>ref|NM_192601.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 372 ccaccgccggccacctccgatctc 395
           ||||||||||||||||| ||||||
Sbjct: 67  ccaccgccggccacctcggatctc 90



to top

>ref|XM_424570.1| PREDICTED: Gallus gallus similar to 2310047H23Rik protein
           (LOC426960), mRNA
          Length = 784

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 265 cactcctctccgccggccaccgcc 288
           |||||||||||||||||| |||||
Sbjct: 278 cactcctctccgccggccgccgcc 255



to top

>ref|XM_414627.1| PREDICTED: Gallus gallus similar to 2310047H23Rik protein
           (LOC416310), mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 265 cactcctctccgccggccaccgcc 288
           |||||||||||||||||| |||||
Sbjct: 278 cactcctctccgccggccgccgcc 255



to top

>ref|XM_750574.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g13340)
           partial mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 cttccttctcctccgccctc 265
           ||||||||||||||||||||
Sbjct: 100 cttccttctcctccgccctc 119



to top

>ref|NM_001038145.1| Bos taurus solute carrier family 25 (mitochondrial carrier;
           phosphate carrier), member 25 (SLC25A25), mRNA
          Length = 3356

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccgccccaccgccggccacc 386
           ||||||||||||||||||||
Sbjct: 633 ccgccccaccgccggccacc 614



to top

>gb|BC108098.1| Bos taurus cDNA clone MGC:127973 IMAGE:7962488, complete cds
          Length = 3356

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 367 ccgccccaccgccggccacc 386
           ||||||||||||||||||||
Sbjct: 633 ccgccccaccgccggccacc 614



to top

>gb|AY027524.1| Frankia sp. CpI1 plasmid pFQ12, complete plasmid sequence
          Length = 22437

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 367  ccgccccaccgccggccacc 386
            ||||||||||||||||||||
Sbjct: 7136 ccgccccaccgccggccacc 7155



to top

>ref|NM_132797.2| Drosophila melanogaster shattered CG9198-RA, transcript variant A
            (shtd), mRNA
          Length = 6380

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  ctcttcactccaccgaccat 313
            ||||||||||||||||||||
Sbjct: 4223 ctcttcactccaccgaccat 4204



to top

>gb|AC010706.8|AC010706 Drosophila melanogaster, chromosome X, region 13C-13E, BAC clone
             BACR36D15, complete sequence
          Length = 159513

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   ctcttcactccaccgaccat 313
             ||||||||||||||||||||
Sbjct: 95073 ctcttcactccaccgaccat 95092



to top

>emb|CR354062.1| Gallus gallus finished cDNA, clone ChEST374p8
          Length = 629

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 210 ctgcccggccccgcggctgc 229
           ||||||||||||||||||||
Sbjct: 119 ctgcccggccccgcggctgc 138



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 372      ccaccgccggccacctccgatctc 395
                ||||||||||||||||| ||||||
Sbjct: 23236069 ccaccgccggccacctcggatctc 23236092



to top

>gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complete sequence
          Length = 119794

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 245   tcttccttctcctccgccctcactcctc 272
             ||||||||||||||| ||| ||||||||
Sbjct: 30574 tcttccttctcctcctcccccactcctc 30547



to top

>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 372   ccaccgccggccacctccgatctc 395
             ||||||||||||||||| ||||||
Sbjct: 22811 ccaccgccggccacctcggatctc 22834



to top

>ref|XM_317470.2| Anopheles gambiae str. PEST ENSANGP00000012304 (ENSANGG00000009815),
            partial mRNA
          Length = 4083

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  gccggccaccgcccgctcct 295
            ||||||||||||||||||||
Sbjct: 2973 gccggccaccgcccgctcct 2954



to top

>dbj|AK069058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I01, full
           insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 372 ccaccgccggccacctccgatctc 395
           ||||||||||||||||| ||||||
Sbjct: 42  ccaccgccggccacctcggatctc 65



to top

>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    tcctccgccctcactcctctccgc 277
              |||||||||||| |||||||||||
Sbjct: 959144 tcctccgccctctctcctctccgc 959121



to top

>gb|AE003499.5| Drosophila melanogaster chromosome X, section 51 of 74 of the complete
             sequence
          Length = 300896

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   ctcttcactccaccgaccat 313
             ||||||||||||||||||||
Sbjct: 52971 ctcttcactccaccgaccat 52990



to top

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 142     ccggtcgccgccgttcctccacca 165
               |||||| |||||||||||||||||
Sbjct: 3291321 ccggtcaccgccgttcctccacca 3291298



to top

>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster,
            complete sequence
          Length = 36905

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  tctccgccggccaccgcccg 290
            ||||||||||||||||||||
Sbjct: 4089 tctccgccggccaccgcccg 4070


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,161,086
Number of Sequences: 3902068
Number of extensions: 3161086
Number of successful extensions: 71158
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70918
Number of HSP's gapped (non-prelim): 240
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top