>ref|XM_469348.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 205 tccgccggcggcgggggcctcg 226
           ||||||||||||||||||||||
Sbjct: 139 tccgccggcggcgggggcctcg 160

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 205      tccgccggcggcgggggcctcg 226
                ||||||||||||||||||||||
Sbjct: 27484118 tccgccggcggcgggggcctcg 27484139



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     ctcggtgcccgacgcgatgc 128
               ||||||||||||||||||||
Sbjct: 5300486 ctcggtgcccgacgcgatgc 5300467

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 205      tccgccggcggcgggggcctcg 226
                ||||||||||||||||||||||
Sbjct: 27575441 tccgccggcggcgggggcctcg 27575462



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     ctcggtgcccgacgcgatgc 128
               ||||||||||||||||||||
Sbjct: 5299701 ctcggtgcccgacgcgatgc 5299682

>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete
             sequence
          Length = 123406

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 205   tccgccggcggcgggggcctcg 226
             ||||||||||||||||||||||
Sbjct: 66396 tccgccggcggcgggggcctcg 66375

>gb|BC085113.1| Mus musculus WD repeat domain 34, mRNA (cDNA clone MGC:103259
           IMAGE:30730999), complete cds
          Length = 1768

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 cctcgccgttcggcgccgcc 241
           ||||||||||||||||||||
Sbjct: 64  cctcgccgttcggcgccgcc 45

>ref|NM_115391.3| Arabidopsis thaliana calcium ion binding AT3G55330 mRNA, complete
           cds
          Length = 907

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  accttcttctccaatctcca 43
           ||||||||||||||||||||
Sbjct: 97  accttcttctccaatctcca 116

>ref|NM_188390.1| Oryza sativa (japonica cultivar-group), Ozsa8116 predicted mRNA
          Length = 657

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gcccctccgccggcggcggg 219
           ||||||||||||||||||||
Sbjct: 391 gcccctccgccggcggcggg 372

>ref|NM_001008498.1| Mus musculus WD repeat domain 34 (Wdr34), mRNA
          Length = 1768

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 cctcgccgttcggcgccgcc 241
           ||||||||||||||||||||
Sbjct: 64  cctcgccgttcggcgccgcc 45

>gb|AC091519.16| Mus musculus strain 129/SvJ chromosome 2 clone mgs1-452h5, complete
              sequence
          Length = 229220

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cctcgccgttcggcgccgcc 241
              ||||||||||||||||||||
Sbjct: 204526 cctcgccgttcggcgccgcc 204507

>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  gcgcccgtccgcggggaacg 146
            ||||||||||||||||||||
Sbjct: 5691 gcgcccgtccgcggggaacg 5710

>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  ctcggtgcccgacgcgatgc 128
            ||||||||||||||||||||
Sbjct: 6654 ctcggtgcccgacgcgatgc 6635

>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3
              clone OSJNBa0021H20, complete sequence
          Length = 133079

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    ctcggtgcccgacgcgatgc 128
              ||||||||||||||||||||
Sbjct: 123888 ctcggtgcccgacgcgatgc 123869

>emb|AL132954.1|ATT26I12 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12
          Length = 88997

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    accttcttctccaatctcca 43
             ||||||||||||||||||||
Sbjct: 83634 accttcttctccaatctcca 83615

>gb|AC163712.3| Gallus gallus BAC clone CH261-29M9 from chromosome ul, complete sequence
          Length = 236367

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    gccggcggcgggggcctcgc 227
              ||||||||||||||||||||
Sbjct: 222198 gccggcggcgggggcctcgc 222217

>gb|AY097338.1| Arabidopsis thaliana AT3g55330/T26I12_210 mRNA, complete cds
          Length = 693

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 accttcttctccaatctcca 43
          ||||||||||||||||||||
Sbjct: 21 accttcttctccaatctcca 40

>gb|AC165369.3| Gallus gallus BAC clone CH261-58G18 from chromosome ul, complete
             sequence
          Length = 208903

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gccggcggcgggggcctcgc 227
             ||||||||||||||||||||
Sbjct: 98494 gccggcggcgggggcctcgc 98513

>gb|AY030050.1| Gallus gallus homeo box A13 (HOXA13) mRNA, complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gccggcggcgggggcctcgc 227
           ||||||||||||||||||||
Sbjct: 180 gccggcggcgggggcctcgc 161

>gb|AF419553.1|AF419553 Arabidopsis thaliana AT3g55330/T26I12_210 mRNA, complete cds
          Length = 904

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  accttcttctccaatctcca 43
           ||||||||||||||||||||
Sbjct: 97  accttcttctccaatctcca 116

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 183     ccggtttcgccgccggggcc 202
               ||||||||||||||||||||
Sbjct: 1040022 ccggtttcgccgccggggcc 1040003

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     gcccctccgccggcggcggg 219
               ||||||||||||||||||||
Sbjct: 6007405 gcccctccgccggcggcggg 6007424

>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ctcggtgcccgacgcgatgc 128
             ||||||||||||||||||||
Sbjct: 21648 ctcggtgcccgacgcgatgc 21629

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 226     gccgttcggcgccgccgctc 245
               ||||||||||||||||||||
Sbjct: 8503563 gccgttcggcgccgccgctc 8503582



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     ggccgccgggccgccccgtg 169
               ||||||||||||||||||||
Sbjct: 8067274 ggccgccgggccgccccgtg 8067255

>gb|AY087663.1| Arabidopsis thaliana clone 3747 mRNA, complete sequence
          Length = 842

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 accttcttctccaatctcca 43
          ||||||||||||||||||||
Sbjct: 33 accttcttctccaatctcca 52

>gb|AY086129.1| Arabidopsis thaliana clone 21674 mRNA, complete sequence
          Length = 848

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 accttcttctccaatctcca 43
          ||||||||||||||||||||
Sbjct: 47 accttcttctccaatctcca 66

>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0466B10
          Length = 151806

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcccctccgccggcggcggg 219
             ||||||||||||||||||||
Sbjct: 75293 gcccctccgccggcggcggg 75312

>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031E09
          Length = 176349

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcccctccgccggcggcggg 219
             ||||||||||||||||||||
Sbjct: 31762 gcccctccgccggcggcggg 31781

>emb|AL807391.10| Mouse DNA sequence from clone RP23-432D24 on chromosome X, complete
             sequence
          Length = 111019

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ccctgtcctgtcttctattc 20
             ||||||||||||||||||||
Sbjct: 59871 ccctgtcctgtcttctattc 59852

>emb|BX005298.9| Mouse DNA sequence from clone RP23-261D24 on chromosome 2, complete
             sequence
          Length = 84664

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cctcgccgttcggcgccgcc 241
             ||||||||||||||||||||
Sbjct: 17785 cctcgccgttcggcgccgcc 17804

>gb|AF083098.1|AF083098 Gallus gallus transcription factor HOXA13 (HOXA13) gene, partial
           cds
          Length = 420

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gccggcggcgggggcctcgc 227
           ||||||||||||||||||||
Sbjct: 207 gccggcggcgggggcctcgc 188

>dbj|AK104322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A02, full
           insert sequence
          Length = 948

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gcccctccgccggcggcggg 219
           ||||||||||||||||||||
Sbjct: 464 gcccctccgccggcggcggg 445

>dbj|AK071702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108G02, full
           insert sequence
          Length = 954

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gcccctccgccggcggcggg 219
           ||||||||||||||||||||
Sbjct: 469 gcccctccgccggcggcggg 450

>dbj|AK068329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I24, full
           insert sequence
          Length = 1005

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gcccctccgccggcggcggg 219
           ||||||||||||||||||||
Sbjct: 465 gcccctccgccggcggcggg 446

>ref|NM_204139.1| Gallus gallus homeobox A13 (HOXA13), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gccggcggcgggggcctcgc 227
           ||||||||||||||||||||
Sbjct: 180 gccggcggcgggggcctcgc 161

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 171    ccggcttcgtccccggtttcgccgccgg 198
              ||||||||||| ||||||||| ||||||
Sbjct: 167899 ccggcttcgtcgccggtttcgtcgccgg 167872

>emb|AM160717.1| Unidentified microorganism metagenome environmental cosmid clone
           10D05, sub clone 10D05-P1
          Length = 970

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 ggcctcgccgttcggcgccgccgc 243
           ||||||||||| ||||||||||||
Sbjct: 358 ggcctcgccgtccggcgccgccgc 381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,576,869
Number of Sequences: 3902068
Number of extensions: 1576869
Number of successful extensions: 36090
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35614
Number of HSP's gapped (non-prelim): 476
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)