ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19d06 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 110 bits (274), Expect = 1e-24 Identities = 52/80 (65%), Positives = 55/80 (68%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 LVAGSHNRNELVVI EEP +PLK + C+IC FVACNEC FP C Sbjct: 7 LVAGSHNRNELVVIHNHEEP--KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPAC 64 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYERREGTQNCPQCKT Sbjct: 65 RPCYEYERREGTQNCPQCKT 84
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 108 bits (270), Expect = 3e-24 Identities = 49/80 (61%), Positives = 55/80 (68%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 LVAGS+ RNELV IR + + G +PLK N CQIC FVACNECAFPVC Sbjct: 7 LVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNECAFPVC 66 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYER++GTQ CPQCKT Sbjct: 67 RPCYEYERKDGTQCCPQCKT 86
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 105 bits (263), Expect = 2e-23 Identities = 47/80 (58%), Positives = 54/80 (67%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 L+AGSHNRNE V+I DE R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNECAFPVC 66 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYERREG Q+CPQCKT Sbjct: 67 RPCYEYERREGNQSCPQCKT 86
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 105 bits (261), Expect = 3e-23 Identities = 47/80 (58%), Positives = 53/80 (66%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 L+AGSHNRNE V+I DE R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNECAFPVC 66 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYERREG Q CPQCKT Sbjct: 67 RPCYEYERREGNQACPQCKT 86
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 103 bits (258), Expect = 8e-23 Identities = 47/80 (58%), Positives = 53/80 (66%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 L+AGSHNRNE V+I DE R +++ + CQIC FVACNECAFPVC Sbjct: 7 LIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNECAFPVC 66 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYERREG Q CPQCKT Sbjct: 67 RPCYEYERREGNQACPQCKT 86
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 95.5 bits (236), Expect = 3e-20 Identities = 42/80 (52%), Positives = 50/80 (62%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 L+AGSHNRNE V+I D+ R ++ + C+IC F+ACNECAFP C Sbjct: 7 LIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNECAFPTC 66 Query: 338 RDCYEYERREGTQNCPQCKT 397 R CYEYERREG Q CPQC T Sbjct: 67 RPCYEYERREGNQACPQCGT 86
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 93.2 bits (230), Expect = 1e-19 Identities = 41/79 (51%), Positives = 50/79 (63%) Frame = +2 Query: 158 LVAGSHNRNELVVIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 337 +VAGS+ R E V R D + G +PLK N CQIC FVACNEC FP+C Sbjct: 1 MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60 Query: 338 RDCYEYERREGTQNCPQCK 394 + CYEYER++G+Q CPQCK Sbjct: 61 QSCYEYERKDGSQCCPQCK 79
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 74.7 bits (182), Expect = 5e-14 Identities = 31/62 (50%), Positives = 38/62 (61%) Frame = +2 Query: 212 EPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQC 391 E +P+K CQIC FVAC+ C+FPVCR CYEYER++G Q+CPQC Sbjct: 6 ETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCPQC 65 Query: 392 KT 397 KT Sbjct: 66 KT 67
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 59.3 bits (142), Expect = 2e-09 Identities = 22/48 (45%), Positives = 28/48 (58%) Frame = +2 Query: 254 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKT 397 C++C FVAC+ C +PVC+ CYEYER G + CPQC T Sbjct: 23 CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNT 70
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 50.1 bits (118), Expect = 1e-06 Identities = 19/46 (41%), Positives = 26/46 (56%) Frame = +2 Query: 254 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQC 391 C C FVAC+EC+FP+C+ C EYE +EG + C +C Sbjct: 9 CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRC 54
>MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 856 Score = 32.0 bits (71), Expect = 0.36 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQNCPQCK 394 C EC F VC+ C Y++ E C C+ Sbjct: 81 CGECKFSVCKSCCSYQKHEKLWVCCVCQ 108
>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 859 Score = 30.8 bits (68), Expect = 0.81 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQNCPQCK 394 C +C F VC+ C Y++ E C C+ Sbjct: 81 CGDCKFNVCKSCCSYQKHEKAWVCCVCQ 108
>YL053_MIMIV (Q5UPC9) Hypothetical protein L53| Length = 100 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 18/47 (38%) Frame = +2 Query: 254 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCK 394 C+IC F++C E PV CYE T C CK Sbjct: 7 CKICCASAKKCCDEPVFISCREKCEPVIYKCYEICEPVCTPVCKPCK 53
>RNF4_HUMAN (P78317) RING finger protein 4| Length = 190 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/65 (21%), Positives = 21/65 (32%) Frame = +2 Query: 200 RRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 379 R + GA L+ +C IC + EC C C + + Sbjct: 114 RNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 172 Query: 380 CPQCK 394 CP C+ Sbjct: 173 CPTCR 177
>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) (Thyroid receptor-interacting protein 8) (TRIP-8) Length = 2540 Score = 29.6 bits (65), Expect = 1.8 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQN 379 C +C F VC DCY+ + R+ +++ Sbjct: 1860 CQKCGFVVCLDCYKAKERKSSRD 1882
>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)| (dRING protein) (Sex comb extra protein) Length = 435 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/67 (25%), Positives = 21/67 (31%) Frame = +2 Query: 194 VIRRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGT 373 VI E P + C IC + EC C DC R G Sbjct: 26 VITDSTEIAVSPRSLHSELMCPICLDMLKKT------MTTKECLHRFCSDCIVTALRSGN 79 Query: 374 QNCPQCK 394 + CP C+ Sbjct: 80 KECPTCR 86
>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1323 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQNCPQ 388 C C F VC DCY +R+ NC Q Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1195 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C P C Y+RR+GT CP C Sbjct: 1135 CGNPSCGHIAIYDRRKGTLRCPVC 1158
>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) (Testis-specific gene A protein) (Zinc-finger protein TSGA) Length = 1214 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQNCPQ 388 C C F VC DCY +R+ NC Q Sbjct: 560 CPRCGFGVCVDCYRLKRK----NCQQ 581
>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1321 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQNCPQ 388 C C F VC DCY +R+ NC Q Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697
>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger| protein 2-A) (RING finger protein 1B-A) (RING1b-A) Length = 344 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCR 88
>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger| protein 2-B) (RING finger protein 1B-B) (RING1b-B) Length = 343 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 62 ECLHRFCSDCIVTALRSGNKECPTCR 87
>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCR 88
>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)| (Transcription repressor Ring1A) Length = 406 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCR 88
>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)| Length = 377 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCR 59
>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCR 88
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCR 88
>CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C FP CRD + Y+ T C +C Sbjct: 181 CLFPACRDYWTYQGSFTTPPCEEC 204
>RNF4_RAT (O88846) RING finger protein 4 (SNURF)| Length = 194 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/65 (20%), Positives = 21/65 (32%) Frame = +2 Query: 200 RRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 379 R ++ G L+ +C IC + EC C C + + Sbjct: 118 RSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 176 Query: 380 CPQCK 394 CP C+ Sbjct: 177 CPTCR 181
>MAT1_MOUSE (P51949) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (p36) (p35) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +2 Query: 314 NECAFPVCRDCYEYERREGTQNCPQCKT 397 N C +C C + G NCP+C T Sbjct: 24 NVCGHTLCESCVDLLFVRGAGNCPECGT 51
>MAT1_HUMAN (P51948) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (p36) (p35) (Cyclin G1-interacting protein) (RING finger protein 66) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +2 Query: 314 NECAFPVCRDCYEYERREGTQNCPQCKT 397 N C +C C + G NCP+C T Sbjct: 24 NVCGHTLCESCVDLLFVRGAGNCPECGT 51
>MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (RING finger| protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) Length = 324 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +2 Query: 314 NECAFPVCRDCYEYERREGTQNCPQCKT 397 N C +C +C E G+ +CP C T Sbjct: 25 NVCGHTLCENCVEILFVRGSGSCPSCNT 52
>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 308 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCR 91
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/23 (34%), Positives = 15/23 (65%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERREGTQN 379 C +C F C DCY+ + R+ +++ Sbjct: 1671 CRKCGFVACLDCYKAKERKSSRD 1693
>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCR 91
>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCR 91
>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) (RING finger protein BAP-1) (DinG protein) (Huntingtin-interacting protein 2-interacting protein 3) (HIP2-interacting protein 3) Length = 336 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCR 91
>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 EC C DC R G + CP C+ Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCR 91
>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription| C16C9.04c Length = 489 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/26 (30%), Positives = 15/26 (57%) Frame = +2 Query: 317 ECAFPVCRDCYEYERREGTQNCPQCK 394 +C + VCR C+ + + + CP C+ Sbjct: 36 QCGYRVCRFCWHHIKEDLNGRCPACR 61
>CAH3_RAT (P14141) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C FP CRD + Y T C +C Sbjct: 181 CLFPACRDYWTYHGSFTTPPCEEC 204
>CAH3_PIG (Q5S1S4) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C FP CRD + Y T C +C Sbjct: 181 CLFPACRDYWTYHGSFTTPPCEEC 204
>CAH3_MOUSE (P16015) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C FP CRD + Y T C +C Sbjct: 181 CLFPACRDYWTYHGSFTTPPCEEC 204
>CAH3_HORSE (P07450) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)| (Carbonate dehydratase III) (CA-III) Length = 259 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 Query: 320 CAFPVCRDCYEYERREGTQNCPQC 391 C FP CRD + Y T C +C Sbjct: 181 CLFPTCRDYWTYRGSFTTPPCEEC 204
>TRI45_MOUSE (Q6PFY8) Tripartite motif protein 45| Length = 580 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERRE 367 C C PVCRDC E RE Sbjct: 203 CELCDRPVCRDCVVGEHRE 221
>JHD2A_CHICK (Q5ZIX8) JmjC domain-containing histone demethylation protein 2A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A) Length = 1325 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +2 Query: 311 CNECAFPVCRDCYEYERR 364 C++C F VC DCY ++ Sbjct: 683 CSKCGFGVCVDCYRMRKK 700
>RNF4_MOUSE (Q9QZS2) RING finger protein 4| Length = 194 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/65 (20%), Positives = 21/65 (32%) Frame = +2 Query: 200 RRDEEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 379 R ++ GA + +C IC + EC C C + + Sbjct: 118 RSTKDDGATGPRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 176 Query: 380 CPQCK 394 CP C+ Sbjct: 177 CPTCR 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.502 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,941,213 Number of Sequences: 219361 Number of extensions: 248536 Number of successful extensions: 829 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 828 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
