ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19d04 |
|---|---|
| Clone Library Name | barley_pub |
>RCOR2_XENLA (Q6NRZ0) REST corepressor 2| Length = 503 Score = 33.9 bits (76), Expect = 0.24 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +3 Query: 120 MSSTRKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLS-DLGSQWSKDELEHFYGAYR 296 +S R+V+N+ + + + K++ +++R +L+ L ++W+ DE A R Sbjct: 292 ISLKRQVQNIKQMNSSL------KESLEGGISEMRPPELNIKLNARWTTDEQLLAVQAVR 345 Query: 297 KYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 KYGKD++ ++ + ++T V+ + R +L E Sbjct: 346 KYGKDFQAISEVLGNKTPSQVKTFFISYRRRFNLEE 381
>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) Length = 1105 Score = 32.7 bits (73), Expect = 0.54 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353 + K + K K + G +W++ E A Y DW KV+ V RT D Sbjct: 605 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 655
>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF complex| component SWI3) (Transcription factor TYE2) Length = 825 Score = 32.7 bits (73), Expect = 0.54 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +3 Query: 228 KKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353 K L + WSK++L+ +++G DW KVA V +++ + Sbjct: 518 KILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559
>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein) Length = 1104 Score = 32.7 bits (73), Expect = 0.54 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353 + K + K K + G +W++ E A Y DW KV+ V RT D Sbjct: 604 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 654
>RCOR_DROME (Q59E36) REST corepressor (CoREST)| Length = 657 Score = 32.0 bits (71), Expect = 0.93 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +3 Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 + ++W DE++ A R+YGK++ +A V +T V Y NR +L + Sbjct: 370 ISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYNLDQ 423
>V362_ASFB7 (P23166) K'362 protein| Length = 362 Score = 32.0 bits (71), Expect = 0.93 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +3 Query: 264 DELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 + +++FY YR + KDWR + G + SD+ E +Y++ + +++ E Sbjct: 194 EAIQYFYQRYRHF-KDWRLICGLSFNNVSDLHE-IYHIKKVDMNIDE 238
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 S+W+ DE A R+YGKD+ +A + ++T V+ + R +L E Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 S+W+ DE A R+YGKD+ +A + ++T V+ + R +L E Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>RCOR2_HUMAN (Q8IZ40) REST corepressor 2| Length = 523 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 S+W+ DE A R+YGKD+ +A + ++T V+ + R +L E Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381
>RCOR2_BRARE (Q6P116) REST corepressor 2| Length = 536 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +3 Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 + S+W+ +E A R+YGKD+ +A + ++T V + + R +L E Sbjct: 329 INSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFFVSYRRRFNLEE 382
>PUPA_PSEPU (P25184) Ferric-pseudobactin 358 receptor precursor| Length = 819 Score = 31.2 bits (69), Expect = 1.6 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Frame = +3 Query: 249 SQWSKDEL---EHFYGAYRKYGKDWR-KVAGAVHDRTSDMVEALYNM--NRAYLSLPEGT 410 ++W D+ + +G ++ DW+ K+A A D D + Y+ NR+YL L T Sbjct: 388 ARWGYDDYTTTNYTFGLEQQLAHDWQFKLAAAYMDVDRDSFSSYYSTTTNRSYLELDGST 447 Query: 411 ATAAGLI 431 +AG++ Sbjct: 448 EISAGIV 454
>VTS1_SCHPO (Q9P6R7) Protein vts1| Length = 713 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 390 NMPYSCCKEPPPYQMFYHGPHQPPSSNLFHIFYKLHRSAP---THLCSTENQGRIIFSFA 220 N+ YS PPP ++ H P P + ++FY+ ++ P T S+ +G+ S + Sbjct: 365 NISYSPPPPPPPPELLNHSPKSRPLGDKPYLFYRNNQIGPRTRTEGRSSITEGKPFLSSS 424 Query: 219 LYF 211 L F Sbjct: 425 LRF 427
>MYB_DROME (P04197) Myb protein| Length = 657 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +3 Query: 255 WSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYN--MNRAY 389 W++ E E Y A+ + G W K+A + RT + ++ +N M R Y Sbjct: 191 WTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKY 237
>RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad50 ATPase| Length = 978 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/89 (25%), Positives = 39/89 (43%) Frame = +3 Query: 132 RKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKD 311 +K+ ++ + K+ + E + K R KKL +L + K++LEH YRK Sbjct: 532 QKINSLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIE--KEKLEHKLNKYRK---- 585 Query: 312 WRKVAGAVHDRTSDMVEALYNMNRAYLSL 398 A+ DR EA +++A L Sbjct: 586 ------ALEDRQKQKEEAQAKLHKAQTEL 608
>DNL4_CHICK (Q90YB1) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 912 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Frame = +3 Query: 297 KYGKD----WRKVAGAVHDRTSDMVEALYNMNRAYLSLPEGTATAAGLIAMMTDHXYI 458 KY KD WRK A+H + D+ ++ Y R L E A G+ M YI Sbjct: 42 KYFKDFLDSWRKFHSALHQKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYI 99
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/67 (22%), Positives = 35/67 (52%) Frame = +3 Query: 171 NEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTS 350 NE E+ AT +++ ++++ S+W+++E+E ++G++W +A V +T Sbjct: 584 NEANHEETATPQQSSELASMEMNE-SSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTV 642 Query: 351 DMVEALY 371 + Y Sbjct: 643 SQCKNFY 649
>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 832 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +3 Query: 252 QWSKDELEHFYGAYRKYGKDWRKVAGAVHDRT 347 +W+ +E E F KYG+ W K+A + RT Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRT 152
>RCOR3_HUMAN (Q9P2K3) REST corepressor 3| Length = 495 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = +3 Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404 + ++W+ +E RKYGKD++ +A + ++T V+ + R +L E Sbjct: 286 INARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEE 339
>NIP80_YEAST (P33420) Protein NIP80 (Protein NIP100)| Length = 868 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 165 KINEDWPEKDATVVHKNKVRKKKLSDLGSQ 254 K+ ED E++ ++ +N V KK+SDLG Q Sbjct: 219 KVQEDLLEENTQLLEENAVLSKKISDLGLQ 248
>DAAM2_HUMAN (Q86T65) Disheveled-associated activator of morphogenesis 2| Length = 1068 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 441 SSSLST--LQP*QFPLEEINMPYSCCKEPPPYQMFYHGPHQPPSS 313 SSS++T L P PL P++CC PPP + GP PP + Sbjct: 532 SSSMTTNDLPPPPPPL-----PFACCPPPPPPPLPPGGPPTPPGA 571
>DNL4_HUMAN (P49917) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 911 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +3 Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPEGTATAAGL 428 S+ +++ HF R++ WRK A+H D+ ++ Y R L E A G+ Sbjct: 29 SKGRAEKIRHF----REFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGI 84 Query: 429 IAMMTDHXYI 458 M YI Sbjct: 85 KETMLAKLYI 94
>TRMD_CHLPN (Q9Z964) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 361 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +1 Query: 211 KIKCERKNYPTLVLSGAKMSWSTSMELIENMEKIGGRWLVRSMIEHLIWWRLFTT*IGHI 390 +++ E+KN TL LS L+ E GG+ L + EH + W L GH Sbjct: 294 EVQAEKKNIVTLSLSLDCACEEDFCYLLRRWELFGGKLLEKQADEHAV-WALAQDLDGHA 352 Query: 391 YLF 399 ++F Sbjct: 353 WIF 355
>SYV_PYRAE (Q8ZVG2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 799 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/83 (22%), Positives = 38/83 (45%) Frame = +3 Query: 156 RYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAV 335 RY +IN ++ +HK+K L ++ D + + A + G D+R + Sbjct: 518 RYVRINGMGLDEKGEAMHKSKGNVIDLLAPVEKYGADPVRFWAAAAGRLGTDYRYNENVI 577 Query: 336 HDRTSDMVEALYNMNRAYLSLPE 404 + + + ++N++R LS PE Sbjct: 578 RE-GKEFLTKVWNISRFVLSFPE 599
>NAS19_CAEEL (Q21181) Zinc metalloproteinase nas-19 precursor (EC 3.4.24.21)| (Nematode astacin 19) Length = 479 Score = 28.9 bits (63), Expect = 7.8 Identities = 10/31 (32%), Positives = 15/31 (48%) Frame = -3 Query: 396 EINMPYSCCKEPPPYQMFYHGPHQPPSSNLF 304 +I P CC + PPY+ + H P L+ Sbjct: 426 KITSPVVCCTDKPPYKNVFKSSHNPTIIELY 456
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 384 PYSCCKEPPPYQMFYHGPHQPPSSNL 307 PY +EPPP Q Y G +PP+ L Sbjct: 759 PYQGYQEPPPPQAPYQGYQEPPAHGL 784 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,456,199 Number of Sequences: 219361 Number of extensions: 1289937 Number of successful extensions: 4023 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4020 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
