ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19d01 |
|---|---|
| Clone Library Name | barley_pub |
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 181 bits (459), Expect = 8e-46 Identities = 92/127 (72%), Positives = 107/127 (84%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R+Y KT K PRRP+E RLD+ELKLVGEYGLR KRE+WRV LS+IR AAR LLTLDEK Sbjct: 4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+FEG AL+RR+ R G+L E + KLDYVLAL AE+FL RRLQTLV+K G+AKSIHHA Sbjct: 64 DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123 Query: 445 RVLIRQR 465 RVLIRQR Sbjct: 124 RVLIRQR 130
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 178 bits (451), Expect = 7e-45 Identities = 88/123 (71%), Positives = 104/123 (84%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VFK G+AKSIHHARVLI Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 129 Query: 457 RQR 465 RQR Sbjct: 130 RQR 132
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 178 bits (451), Expect = 7e-45 Identities = 88/123 (71%), Positives = 104/123 (84%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VFK G+AKSIHHARVLI Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 129 Query: 457 RQR 465 RQR Sbjct: 130 RQR 132
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 178 bits (451), Expect = 7e-45 Identities = 88/123 (71%), Positives = 104/123 (84%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 10 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 69 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VFK G+AKSIHHARVLI Sbjct: 70 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 129 Query: 457 RQR 465 RQR Sbjct: 130 RQR 132
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 177 bits (450), Expect = 9e-45 Identities = 84/126 (66%), Positives = 108/126 (85%) Frame = +1 Query: 88 NYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKN 267 NY KT PRRP+EKER+DAELK+VGE+GL+ K E+WRVQYAL++IR AAR LL LDEK+ Sbjct: 4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKD 63 Query: 268 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHAR 447 P+RIFEG+ALLRR+++ G++ E ++KLDY+L L ++F+ RRLQTLVFK G+AKSIHHAR Sbjct: 64 PKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHAR 123 Query: 448 VLIRQR 465 VLI+ R Sbjct: 124 VLIKGR 129
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 175 bits (444), Expect = 4e-44 Identities = 87/125 (69%), Positives = 104/125 (83%) Frame = +1 Query: 91 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNP 270 + KT+ PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR AAR LLTLDEK+ Sbjct: 10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69 Query: 271 RRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARV 450 +R+F+G ALLRR+ R G+L E + KLDYVL L E+FL RRLQT VFK G+AKSIHHARV Sbjct: 70 KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129 Query: 451 LIRQR 465 LIRQR Sbjct: 130 LIRQR 134
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 172 bits (436), Expect = 4e-43 Identities = 85/122 (69%), Positives = 101/122 (82%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 KT+ PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR AAR LLTLDEK+PRR Sbjct: 9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 68 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 +FEG ALLRR+ R G+L EG+ KLDY+L L E+FL RRLQT VFK G+A SIHH RVLI Sbjct: 69 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLI 128 Query: 457 RQ 462 RQ Sbjct: 129 RQ 130
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 172 bits (436), Expect = 4e-43 Identities = 80/128 (62%), Positives = 103/128 (80%) Frame = +1 Query: 82 YRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDE 261 Y N+ + +K PRRP+EKERLD E+KL G+YGLRCKRE+WRV LS++R AR LLTL E Sbjct: 4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPE 63 Query: 262 KNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHH 441 +PRR+ EG+A++RR + YG L E +DKLDYVL+LT + L RRLQT+VFK G+AKS+HH Sbjct: 64 NHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHH 123 Query: 442 ARVLIRQR 465 +RVLI+QR Sbjct: 124 SRVLIQQR 131
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 172 bits (435), Expect = 5e-43 Identities = 87/127 (68%), Positives = 101/127 (79%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+FEG A++RR+ R G+L E + KLDYVLAL E+FL RRLQT VFK G+AKSIHHA Sbjct: 65 DPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHA 124 Query: 445 RVLIRQR 465 RVLI QR Sbjct: 125 RVLIFQR 131
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 171 bits (433), Expect = 8e-43 Identities = 87/127 (68%), Positives = 101/127 (79%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R KT+K PRRP+E RLDAELKL GEYGLR K E+WRV LS+IR AAR LLTLDEK Sbjct: 5 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEK 64 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+FEG A++RR+ R G+L E + KLDYVLAL E+FL RRLQT VFK G+AKSIHHA Sbjct: 65 DPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHA 124 Query: 445 RVLIRQR 465 RVLI QR Sbjct: 125 RVLIFQR 131
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 170 bits (430), Expect = 2e-42 Identities = 82/127 (64%), Positives = 103/127 (81%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R Y KT+ P+RPYE RLDAELKL GE+GL+ KRE++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEK 64 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+FEG AL+RR+ R G+L+E + KLDYVLAL E+FL RRLQT V+K G+AKS+HHA Sbjct: 65 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA 124 Query: 445 RVLIRQR 465 RVLI QR Sbjct: 125 RVLITQR 131
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 169 bits (427), Expect = 4e-42 Identities = 81/127 (63%), Positives = 103/127 (81%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R Y KT+ P+RPYE RLDAELKL GE+GL+ K+E++R+ + LS+IR AAR LLT DEK Sbjct: 5 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEK 64 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+FEG AL+RR+ R G+L+E + KLDYVLAL E+FL RRLQT V+K G+AKS+HHA Sbjct: 65 DPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHA 124 Query: 445 RVLIRQR 465 RVLI QR Sbjct: 125 RVLITQR 131
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 164 bits (416), Expect = 8e-41 Identities = 79/122 (64%), Positives = 101/122 (82%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K K PRRP+EKERLD ELKL+G +GL+ KRE+WRV+Y L+++R AAR LLTL++K+P+R Sbjct: 10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKR 69 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 +FEG ALLRR+ + G+L E + KLDYVL L E+FL RRLQT VFK G+AKSIHHAR+LI Sbjct: 70 LFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILI 129 Query: 457 RQ 462 +Q Sbjct: 130 KQ 131
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 158 bits (399), Expect = 7e-39 Identities = 80/134 (59%), Positives = 100/134 (74%) Frame = +1 Query: 64 MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARH 243 MV YR + K PRRP+EKER+D ELK+ G+YGL+ K+E+WR+QY L+R R ARH Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60 Query: 244 LLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGM 423 LLTL E + +R FEGAALLRRM R GLL E + +LDY+L+L E+ L RRLQT+V K G+ Sbjct: 61 LLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGL 120 Query: 424 AKSIHHARVLIRQR 465 +KSIHHAR LI QR Sbjct: 121 SKSIHHARQLIFQR 134
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 148 bits (374), Expect = 6e-36 Identities = 72/125 (57%), Positives = 95/125 (76%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 RN+ T+K P+ PYE+ER DAELKLVG++GL+ K+E+ RV Y L +R A+ +L D K Sbjct: 2 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAK 61 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 +P+R+ EGAALLRR++ G+L Q+KL++VLAL EN L RRLQTLV++ G KSIHHA Sbjct: 62 DPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFGKSIHHA 121 Query: 445 RVLIR 459 RVLIR Sbjct: 122 RVLIR 126
>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P| Length = 199 Score = 100 bits (250), Expect = 1e-21 Identities = 58/123 (47%), Positives = 82/123 (66%), Gaps = 3/123 (2%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL---LTLDEKN 267 K + PR P+EKER+D E K+V +YGL+ K+E+WR + LS IR+ AR L L ++ N Sbjct: 9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVN 68 Query: 268 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHAR 447 ++ E +++R+NRY LL+E LD VL+LT EN L RRLQT+VF+ +A S+ AR Sbjct: 69 AQKQLE--RMIKRLNRYKLLSENA-TLDDVLSLTVENILDRRLQTIVFRKNLAISVRQAR 125 Query: 448 VLI 456 LI Sbjct: 126 QLI 128
>RS4_THEVO (Q97B95) 30S ribosomal protein S4P| Length = 200 Score = 95.9 bits (237), Expect = 5e-20 Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 3/123 (2%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL---LTLDEKN 267 K + PR P+EK+R+D E K++ +YGL+ KRE+WR + LS IR+ AR+L L + N Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDAN 68 Query: 268 PRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHAR 447 ++ E +++R++RY +L++ + LD VL+LT EN L RRLQT+VFK +A S AR Sbjct: 69 AQKQLE--RMIKRLSRYKILSD-KATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQAR 125 Query: 448 VLI 456 LI Sbjct: 126 QLI 128
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 94.0 bits (232), Expect = 2e-19 Identities = 50/124 (40%), Positives = 76/124 (61%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R + KT++ P P+ KER++ E +L +YGLR KRE+W+ + L + R AR L++ ++ Sbjct: 6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DR 63 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 + E L + +YG+L LD VL+LT E+ L RRLQTLVF+ G+A++ A Sbjct: 64 TEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQA 123 Query: 445 RVLI 456 R LI Sbjct: 124 RQLI 127
>RS4_AERPE (Q9YB58) 30S ribosomal protein S4P| Length = 171 Score = 91.3 bits (225), Expect = 1e-18 Identities = 50/120 (41%), Positives = 73/120 (60%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P+ P+ KERL+ E +L+G YGLR K+ELW+ + R R+ AR LL L + R Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRRE 68 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 L+ + R GL+ +D VL + AE L RRLQT+V+K G+AK+I+ AR L+ Sbjct: 69 --ASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLV 126
>RS4_METKA (Q8TVC0) 30S ribosomal protein S4P| Length = 186 Score = 90.9 bits (224), Expect = 1e-18 Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ PR P+E ERL+ E KL+ +YGLR K+ELWR Q L R R A+ L+ + +R Sbjct: 9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR 68 Query: 277 IFEGAALLRRMNRYGLLAEGQDK--LDYVLALTAENFLARRLQTLVFKAGMAKSIHHARV 450 E AL R++ G+L + ++ LD +L LT E+ L RRLQT+V++ G+AK+ AR Sbjct: 69 --EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQ 126 Query: 451 LIRQR 465 L+ R Sbjct: 127 LVVHR 131
>RS4_SULAC (P39467) 30S ribosomal protein S4P| Length = 176 Score = 90.1 bits (222), Expect = 2e-18 Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 2/126 (1%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLD-- 258 R K + P P+ K L E L+G+YGLR K+E+W Q + R+ AR LL L Sbjct: 5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPA 64 Query: 259 EKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIH 438 E+N R L++++ R G+L + LD +L+LT EN+L RRLQT+V+K G+A++I+ Sbjct: 65 ERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIY 120 Query: 439 HARVLI 456 AR LI Sbjct: 121 QARQLI 126
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 88.2 bits (217), Expect = 9e-18 Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLT---- 252 + + K + P P++K RL+ E++LV +YGLR KRELWR Q L + R AR LL Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGL 64 Query: 253 LDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKS 432 ++ + +++++N+ G+L E LD +L L+ E+FL RRLQT+V++ G+A++ Sbjct: 65 PGKEGEIAKAKAQTVIKKLNKMGILPENA-TLDDILNLSVEDFLERRLQTMVYRQGLART 123 Query: 433 IHHARVLI 456 I AR I Sbjct: 124 IKQARQFI 131
>RS4_PICTO (Q6KZP7) 30S ribosomal protein S4P| Length = 183 Score = 87.8 bits (216), Expect = 1e-17 Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHL-LTLDEKNPR 273 K + PR P+EK+R+DAE +L+ +YGL+ KRELWR Q L+ R AR L L +P Sbjct: 9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPL 68 Query: 274 RIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVL 453 I + L+ +++R LL E LD VL+L E+ L RRL+TLV+K +A ++ AR Sbjct: 69 AIKQFQLLIGKLSRLNLLGENA-TLDDVLSLNIEDILERRLETLVYKKNLALTMKQARQF 127 Query: 454 I 456 I Sbjct: 128 I 128
>RS4_SULTO (Q96YV8) 30S ribosomal protein S4P| Length = 177 Score = 87.4 bits (215), Expect = 2e-17 Identities = 47/120 (39%), Positives = 73/120 (60%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--R 66 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 L++++ R G++ + LD +L L EN+L RRLQT+V+K G+A++I+ AR LI Sbjct: 67 STREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLI 126
>RS4_PYRHO (O59306) 30S ribosomal protein S4P| Length = 180 Score = 87.4 bits (215), Expect = 2e-17 Identities = 53/120 (44%), Positives = 71/120 (59%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V+K G+A+++ AR LI Sbjct: 68 -IEREQLLSRLKRLGLLPE-DAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLI 125
>RS4_PYRFU (P61993) 30S ribosomal protein S4P| Length = 180 Score = 87.0 bits (214), Expect = 2e-17 Identities = 53/120 (44%), Positives = 71/120 (59%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V+K G+A+++ AR LI Sbjct: 68 -IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
>RS4_PYRAB (P61992) 30S ribosomal protein S4P| Length = 180 Score = 87.0 bits (214), Expect = 2e-17 Identities = 53/120 (44%), Positives = 71/120 (59%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE- 67 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E LL R+ R GLL E LD VL+LT E+ L RRLQT+V+K G+A+++ AR LI Sbjct: 68 -IEREQLLARLKRLGLLPE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLI 125
>RS4_METBF (Q46GC8) 30S ribosomal protein S4P| Length = 216 Score = 85.9 bits (211), Expect = 5e-17 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 6/126 (4%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQER 68 Query: 277 IFEG------AALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIH 438 EG +L ++ RYG++ D +D +L+L EN L RRLQT V + G+A+++ Sbjct: 69 GLEGHQKTQSEEILAKLIRYGIIKSDAD-IDDILSLKTENILERRLQTQVLRLGLARTVV 127 Query: 439 HARVLI 456 AR I Sbjct: 128 QARQFI 133
>RS4_SULSO (P95987) 30S ribosomal protein S4P| Length = 181 Score = 85.5 bits (210), Expect = 6e-17 Identities = 47/120 (39%), Positives = 74/120 (61%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P+ KER+ E +L+G+YGLR KRE+W Q + + R+ AR LL L R Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP--AER 66 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 L+ ++ + GLL + +D +L+LT ++ L RRLQT+V+K G++ +I+ AR LI Sbjct: 67 AVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLI 126
>RS4_PYRAE (Q8ZTV1) 30S ribosomal protein S4P| Length = 159 Score = 85.5 bits (210), Expect = 6e-17 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 2/118 (1%) Frame = +1 Query: 109 KPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLL--TLDEKNPRRIF 282 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM- 73 Query: 283 EGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 ++ + G + + +LD +L+L L RRLQT+V++ G+AKSIHHAR LI Sbjct: 74 ---PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLI 128
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 84.3 bits (207), Expect = 1e-16 Identities = 49/124 (39%), Positives = 75/124 (60%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R K + P P+ ER+ E +LV +YGL+ K+E+W+ + + R R AR+LL + + Sbjct: 5 RKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMASE 64 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 + + E LL + R G+L EG KL+ VL LT E+ L RRLQTLV K G+A+++ A Sbjct: 65 HTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEA 121 Query: 445 RVLI 456 R ++ Sbjct: 122 RQMV 125
>RS4_HALMA (Q00862) 30S ribosomal protein S4P (HmaS4)| Length = 171 Score = 84.0 bits (206), Expect = 2e-16 Identities = 50/120 (41%), Positives = 68/120 (56%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P++ ER+ E L+G YGL+ K ELWR Q L R AR LL ++ Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET- 66 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E L R+ RYG+L E QD+LD VL+L + L RRLQT+V++ G A + AR I Sbjct: 67 --ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFI 123
>RS4_PYRKO (Q5JJF2) 30S ribosomal protein S4P| Length = 180 Score = 84.0 bits (206), Expect = 2e-16 Identities = 52/120 (43%), Positives = 69/120 (57%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P+ KERLD E L Y L+ K+ELWR + L R AR LL K Sbjct: 9 KKYETPSHPWIKERLDRERVLKRNYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE- 67 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E LL+R+ R GLL LD VL+LT E+ L RRLQT+V++ G+A+++ AR LI Sbjct: 68 -IERQQLLQRLYRLGLL-PADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLI 125
>RS4_METMP (Q6LXN0) 30S ribosomal protein S4P| Length = 178 Score = 82.4 bits (202), Expect = 5e-16 Identities = 46/124 (37%), Positives = 70/124 (56%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEK 264 R GK + P P+ ER+ E ++ +YGL K+ELW+++ L R AR L++ + Sbjct: 5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DT 62 Query: 265 NPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHA 444 + E L + RY +L E + LD+VL+L E+ L RRLQT+VF+ G+AK+ A Sbjct: 63 TTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQA 122 Query: 445 RVLI 456 R I Sbjct: 123 RQFI 126
>RS4_HALSA (Q9HQJ6) 30S ribosomal protein S4P| Length = 170 Score = 79.0 bits (193), Expect = 6e-15 Identities = 45/120 (37%), Positives = 67/120 (55%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTG 63 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 G + R+ R G+L+E +++LD VL+L + L RRLQT+V++ G+A ++ AR + Sbjct: 64 TVSGEEFVARLQRIGILSE-EERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFV 122
>RS4_METMA (Q8PV18) 30S ribosomal protein S4P| Length = 219 Score = 77.0 bits (188), Expect = 2e-14 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 7/127 (5%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTL------- 255 K+++ PR P+++ R+ AE++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQE 68 Query: 256 DEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSI 435 E + +L ++ RYG++ + +D +L+L EN L RRLQT V + G+A+++ Sbjct: 69 GELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTV 127 Query: 436 HHARVLI 456 AR I Sbjct: 128 IQARQFI 134
>RS4_METAC (Q8TRR1) 30S ribosomal protein S4P| Length = 218 Score = 75.9 bits (185), Expect = 5e-14 Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K+++ P+ P+++ R+ E++LV YGLR K+E+W+ L R+ AR LL Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEG 68 Query: 277 IFEG------AALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIH 438 EG +L ++ RYG++ + +D +L+L EN L RRLQT V + G+A+++ Sbjct: 69 GLEGHYRTQSEEILSKLIRYGII-KSDANIDDILSLKTENILERRLQTQVLRLGLARTVI 127 Query: 439 HARVLI 456 AR I Sbjct: 128 QARQFI 133
>RS4_NANEQ (Q74NF7) 30S ribosomal protein S4P| Length = 180 Score = 72.8 bits (177), Expect = 4e-13 Identities = 43/120 (35%), Positives = 69/120 (57%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 + ++ P P++K+RL E +L+ EYGL+ KRELW + + R AR+L Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDI 65 Query: 277 IFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 E L ++ + G+L+E + LD VL LT ++ L RRLQT++ + G+AK++ AR I Sbjct: 66 SEEKERFLTKLKKLGVLSENAE-LDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFI 124
>RS4_NATPD (Q3IQT8) 30S ribosomal protein S4P| Length = 174 Score = 71.2 bits (173), Expect = 1e-12 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Frame = +1 Query: 97 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRR 276 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ + + Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVA 67 Query: 277 IFE-GAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVL 453 E G+ L R+ R G+L + +D LD +L+L + L RRLQT+ ++ G+ + AR Sbjct: 68 AAEAGSEFLARLKRIGVL-DDEDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQF 126 Query: 454 I 456 I Sbjct: 127 I 127
>RS4_PELCD (Q3A6M1) 30S ribosomal protein S4| Length = 209 Score = 34.7 bits (78), Expect = 0.12 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = +1 Query: 301 RRMNR-YGLLAEGQ----DKLDYVLALTAENFLA---RRLQTLVFKAGMAKSIHHARVLI 456 +RM R YGLL + DK D + +T EN L RRL + V++ G A S R L+ Sbjct: 61 QRMKRTYGLLEKQFRAYFDKADSMKGVTGENLLVLLERRLDSAVYRLGFASSRTEGRALV 120 Query: 457 RQ 462 RQ Sbjct: 121 RQ 122
>RS4_DESPS (Q6AP44) 30S ribosomal protein S4| Length = 210 Score = 32.0 bits (71), Expect = 0.80 Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Frame = +1 Query: 85 RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRC---KRELWRVQYALSRIRNAARHLLTL 255 RN G ++ RR E L LK Y +C +R Q+ +R + + + + L Sbjct: 3 RNIGAVCRRCRR----ENLKLFLKGDRCYSDKCSFERRAFAPGQHGQARFKKVSDYAVQL 58 Query: 256 DEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLA-----LTAENFLA---RRLQTLVF 411 EK + + YG+L E Q +L + A + EN L RRL VF Sbjct: 59 REKQKVK-----------SMYGVL-EAQFRLTFEKAEAQKGVAGENLLILLERRLDNAVF 106 Query: 412 KAGMAKSIHHARVLIRQR 465 +AG A S AR ++R + Sbjct: 107 RAGFASSRTQARQIVRHK 124
>RS4_CARHZ (Q3A9U3) 30S ribosomal protein S4| Length = 208 Score = 32.0 bits (71), Expect = 0.80 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = +1 Query: 226 RNAARHLLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLA---RRL 396 + + L L EK + G L + RY +AE Q +T EN L RRL Sbjct: 48 KKPTEYALQLREKQKAKRIYGV-LEAQFRRYFEMAERQP------GITGENLLVILERRL 100 Query: 397 QTLVFKAGMAKSIHHARVLIR 459 +V++ G+A+S AR L+R Sbjct: 101 DNVVYRLGLAESRAQARQLVR 121
>RR4_FUNHY (Q9SMG1) Chloroplast 30S ribosomal protein S4| Length = 201 Score = 32.0 bits (71), Expect = 0.80 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = +1 Query: 217 SRIRNAARHLLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRL 396 S + +++ + L+EK R G + +N + + + VL L RL Sbjct: 36 SAAKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGSTGQVLL----QLLEMRL 91 Query: 397 QTLVFKAGMAKSIHHARVLIRQR 465 +VF+ GMA +I AR L+ R Sbjct: 92 DNIVFRLGMAPTIPGARQLVNHR 114
>RR4_PHYPA (Q6YXP3) Chloroplast 30S ribosomal protein S4| Length = 201 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/83 (25%), Positives = 37/83 (44%) Frame = +1 Query: 217 SRIRNAARHLLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRL 396 S + +++ + L+EK R G + +N + + + +L L RL Sbjct: 36 STAKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGSTGQILL----QLLEMRL 91 Query: 397 QTLVFKAGMAKSIHHARVLIRQR 465 +VF+ GMA +I AR L+ R Sbjct: 92 DNIVFRLGMAPTIPGARQLVNHR 114
>IMP3_SCHPO (O13835) U3 small nucleolar ribonucleoprotein protein imp3 (U3| snoRNP protein imp3) Length = 183 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/105 (21%), Positives = 41/105 (39%) Frame = +1 Query: 148 ELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRRIFEGAALLRRMNRYGLL 327 ++ ++ Y + + E + + R A L LD +P R+ LL ++ G+L Sbjct: 29 DVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGIL 88 Query: 328 AEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLIRQ 462 D RRL ++ K M++ + A LI Q Sbjct: 89 PSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQ 133
>RS4_GEOMG (Q39XY0) 30S ribosomal protein S4| Length = 208 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Frame = +1 Query: 340 DKLDYVLALTAENFLA---RRLQTLVFKAGMAKSIHHARVLIR 459 ++ D + +T EN L+ RRL +V++ G A S AR+L+R Sbjct: 79 EEADRMRGVTGENLLSLLERRLDNVVYRLGFASSRTEARILVR 121
>RS9_TOBAC (P49214) 40S ribosomal protein S9 (S4) (Fragment)| Length = 77 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = +1 Query: 424 AKSIHHARVLIRQR 465 AKS+HHARVLIRQR Sbjct: 1 AKSVHHARVLIRQR 14
>RS4_OCEIH (P59130) 30S ribosomal protein S4| Length = 200 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +1 Query: 301 RRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 R+++ YGL + + KL ++ L F +TL KAG K IH +I Sbjct: 42 RKLSEYGLQMQEKQKLRFMYGLNERQF-----RTLFDKAGKMKGIHGENFMI 88
>RS4_BACHD (Q9K7Z8) 30S ribosomal protein S4| Length = 200 Score = 30.0 bits (66), Expect = 3.1 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Frame = +1 Query: 94 GKTFKKPRRPYEK-ERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNP 270 GK +K RPY + + K + EYGL+ + + RH+ ++E+ Sbjct: 23 GKELQK--RPYAPGQHGPNQRKKLSEYGLQLQE------------KQKLRHMYGVNERQF 68 Query: 271 RRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENF---LARRLQTLVFKAGMAKSIHH 441 RRIF A + + ENF L RL LV++ G+A++ Sbjct: 69 RRIFNDAGKM-------------------AGIHGENFMILLESRLDNLVYRMGLARTRRA 109 Query: 442 ARVLI 456 AR L+ Sbjct: 110 ARQLV 114
>RS4_GEOSL (Q749B2) 30S ribosomal protein S4| Length = 208 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +1 Query: 349 DYVLALTAENFLA---RRLQTLVFKAGMAKSIHHARVLIR 459 D + +T EN L+ RRL +V++ G A S AR+L+R Sbjct: 82 DRLKGVTGENLLSLLERRLDNVVYRLGFAASRTEARILVR 121
>RT04_RECAM (O21263) Mitochondrial ribosomal protein S4| Length = 249 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 382 LARRLQTLVFKAGMAKSIHHARVLIRQR 465 L RRL ++++AG SI+ AR+L+ + Sbjct: 131 LERRLDIIIYRAGFVNSIYQARLLVNHK 158
>RS4_LACAC (Q5FKX2) 30S ribosomal protein S4| Length = 203 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +1 Query: 313 RYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLI 456 R G + EGQ +++++ L RRL ++V++ G+A + AR L+ Sbjct: 74 RAGKIREGQHGINFMI------LLERRLDSIVYRLGLATTREQARQLV 115
>RS4_DESVH (Q72CF5) 30S ribosomal protein S4| Length = 208 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = +1 Query: 298 LRRMNRYGLLAEGQD----KLDYVLALTAENFLA---RRLQTLVFKAGMAKSIHHARVLI 456 +RRM YG+L + K D +T N L+ RRL ++++ G A S + AR L+ Sbjct: 63 VRRM--YGILEQQFHAYFTKADMAKGVTGANLLSLLERRLDNVIYRLGFANSRNQARQLV 120 Query: 457 R 459 R Sbjct: 121 R 121
>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)| Length = 380 Score = 29.3 bits (64), Expect = 5.2 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Frame = -2 Query: 334 PQQGAHSGSCDEEELHPQR--------YGGD-------SSHPV*ASALQHYGSCSMHTGP 200 P+Q S SC EE HP Y + SHP+ + AL SM + Sbjct: 207 PEQTFFSSSCQEEHGHPHHLPHLPGPPYSPEFTPSPLHCSHPLGSLALGQSPGVSMMSSV 266 Query: 199 SRAHACTSVHTHPPALVLHPDAPSH 125 S + ++H LHP+ +H Sbjct: 267 SGCPPSPAYYSHATYHPLHPNLQAH 291
>LMNA_CHICK (P13648) Lamin-A| Length = 657 Score = 29.3 bits (64), Expect = 5.2 Identities = 30/88 (34%), Positives = 41/88 (46%) Frame = +1 Query: 133 ERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRRIFEGAALLRRMN 312 + L AEL + + + +L V+ ALSR R R LL E+ E A + RM Sbjct: 299 DSLSAELSQLQKQLAAKEAKLREVEEALSREREGGRRLLAEKER------EMAEMRARMQ 352 Query: 313 RYGLLAEGQDKLDYVLALTAENFLARRL 396 + L E Q+ LD LAL E R+L Sbjct: 353 QQ--LDEYQELLDIKLALDMEINAYRKL 378
>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein| Length = 143 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/47 (34%), Positives = 18/47 (38%) Frame = +3 Query: 324 PC*GPGQA*LRPCPDC*ELPCKAPSDSCLQGWHGKVHPPCPCLDQAT 464 PC P + P C + PC P C PPCPC AT Sbjct: 19 PCCPPKPCCPQKPPCCPKSPCCPPKSPCCPPKPCPCPPPCPCPCPAT 65
>RS4_BACLD (Q65G42) 30S ribosomal protein S4| Length = 200 Score = 28.9 bits (63), Expect = 6.8 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Frame = +1 Query: 94 GKTFKKPRRPYEK-ERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNP 270 GK +K RPY + K + EYGL+ + + RH+ ++E+ Sbjct: 23 GKELEK--RPYAPGPHGPGQRKKLSEYGLQLQE------------KQKLRHMYGVNERQF 68 Query: 271 RRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENF---LARRLQTLVFKAGMAKSIHH 441 R +F+ AA + ++G ENF L RL +V++ G+A++ Sbjct: 69 RNLFDKAA--KMAGKHG-----------------ENFMILLESRLDNIVYRLGLARTRRQ 109 Query: 442 ARVLI 456 AR L+ Sbjct: 110 ARQLV 114
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = -3 Query: 360 KDVIKLVLALSKEPIAVHATKKSCTLKDTAGILLIQCEQVPCSITDPAQCILDPPE 193 +D IK+ KE ++ K+ +K TA I+C Q P ++ + +++PPE Sbjct: 1561 EDGIKIEENSLKEEESIEGEKE---VKSTAPETAIECTQAPAPASEDEKVVVEPPE 1613
>CH60_MYCGE (P47632) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 543 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 405 KSLKAPCKEVLSSQGKDVIKLVLALSKEPIAV 310 KSL+AP ++++ + G D +K++ L E V Sbjct: 454 KSLEAPARQIIQNSGVDPVKILSELKNEKTGV 485
>RR4_TRARA (P36473) Chloroplast 30S ribosomal protein S4 (Fragment)| Length = 196 Score = 28.5 bits (62), Expect = 8.9 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = +1 Query: 238 RHLLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKA 417 ++ + L EK R G R++ RY +A K + L L RL +VF+ Sbjct: 43 QYRIRLQEKQKLRFHYGLTE-RQLLRYVHIAGKAKKSTGQVLL---QLLEMRLDNIVFRL 98 Query: 418 GMAKSIHHARVLIRQR 465 GMA +I AR L+ R Sbjct: 99 GMASTIPGARQLVNHR 114
>RR4_ELEIN (P36456) Chloroplast 30S ribosomal protein S4 (Fragment)| Length = 196 Score = 28.5 bits (62), Expect = 8.9 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = +1 Query: 238 RHLLTLDEKNPRRIFEGAALLRRMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKA 417 ++ + L EK R G R++ RY +A K + L L RL +VF+ Sbjct: 43 QYRIRLQEKQKLRFHYGLTE-RQLLRYVHIAGKAKKSTGQVLL---QLLEMRLDNIVFRL 98 Query: 418 GMAKSIHHARVLIRQR 465 GMA +I AR L+ R Sbjct: 99 GMASTIPGARQLVNHR 114
>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein| Length = 145 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/42 (33%), Positives = 16/42 (38%) Frame = +3 Query: 324 PC*GPGQA*LRPCPDC*ELPCKAPSDSCLQGWHGKVHPPCPC 449 PC P L+ P C + PC P C PCPC Sbjct: 20 PCCPPKPCCLQKSPCCPKSPCCPPKSPCCTPKVCPCPTPCPC 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,512,277 Number of Sequences: 219361 Number of extensions: 1240121 Number of successful extensions: 3692 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 3553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3653 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
