>CCA_METKA (Q8TGY5) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 485

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 7   REMLRA*ERRNCSGIR*KKKDMADIEAGKPATESDTATLIPNSGSLEGSSRATKTTRFKD 186
           RE++    RR  S +R + K+        P  E +    +     L G+S       F  
Sbjct: 21  RELVEGFARRILSEVRDRLKER------DPDAEVELIGSVARDTWLPGASDVDVFCVFPK 74

Query: 187 D---DEVVEITLDVQRDAVSVQG 246
           D   DE+VE+TL+V R+A+   G
Sbjct: 75  DRDLDEIVEVTLEVGREAIEALG 97

>G6PI_BIFLO (Q8G7I6) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 566

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 373 WAAVEKRFNHLQVDGVLLRSRFGK 444
           WAA++K ++ LQV+GV L+  F +
Sbjct: 15  WAALQKHYDELQVEGVSLKKWFAE 38

>JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase 3)|
            (JAK-3)
          Length = 1299

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
 Frame = -3

Query: 408  LQVVEPLLHSGPAVAANFGSHKLQALERHRSGALAPVISLPRG-GHRSLR--------GH 256
            L  V+ L HSGP    +F   ++Q L+   S  +     +  G G +SLR        G 
Sbjct: 1060 LVAVKQLQHSGPDQQRDF-QREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGC 1118

Query: 255  RPDALDRHRIPLHVER 208
              D L RHR  LH +R
Sbjct: 1119 LRDFLQRHRAALHTDR 1134

>B3A4_RABIT (Q9GKY1) Anion exchange protein 4 (Anion exchanger 4) (Solute|
           carrier family 4 member 9)
          Length = 955

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 348 HKLQALERHRSGALAPVISLPRGG 277
           H+ QA +RHR+G LAP   L R G
Sbjct: 332 HRTQAEDRHRNGPLAPSPELQRTG 355

>NOS1_HUMAN (P29475) Nitric-oxide synthase, brain (EC 1.14.13.39) (NOS type I)|
           (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS)
           (NC-NOS) (bNOS)
          Length = 1434

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 309 LAPVISLPRGGHRSLRGHRPDALDRHRIPLHVERDLD 199
           + PV+SL   G R ++G  P   +   + + V+RDLD
Sbjct: 209 IEPVLSLLTSGSRGVKGGAPAKAEMKDMGIQVDRDLD 245

>SPG7_DICDI (P22698) Spore germination protein 270-11|
          Length = 532

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 73  ADIEAGKPATESDTATLIPNSGSLEGSSRATKT 171
           ++IE   P TE+DT T  P+S S EGS  +++T
Sbjct: 393 SEIETPTP-TETDTPTPTPSSSSSEGSGSSSET 424

>STP2_PIG (P29258) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 137

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 339 QALERHRSGALAPVISLPRGGHRSLRGHRPDALDRHRIPLHVERDLDDLVVVFEPG 172
           Q+  R RS + +P       GHRSL GH+  +L     P H +R +        PG
Sbjct: 46  QSCSRSRSSSQSPT------GHRSLPGHQSQSLSPSPSPRHRKRAMHSHRCPSRPG 95

>NCAP_SV41 (P27018) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP|
           protein)
          Length = 543

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
 Frame = -3

Query: 426 EQDAINLQVVEPLLH------SGPAVAANFGSHKLQ------ALERHRSGALAPVISLP- 286
           E   + L+ + PL+       + PA+ A      L+      A E H++GAL  + SLP 
Sbjct: 22  EDTPVPLETIRPLIRVFVVNSNDPALRAQLLLFNLRIIMSNTARESHKTGALLSMFSLPA 81

Query: 285 --RGGHRSLRGHRPDA-LDRHRI 226
              G H  L    P+A +DR  I
Sbjct: 82  AAMGNHLKLATRSPEASIDRVEI 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,652,991
Number of Sequences: 219361
Number of extensions: 1175658
Number of successful extensions: 3672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3672
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)