>TRUB_SYMTH (Q67P83) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 299

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -3

Query: 230 LLHTKLNPYALSRVQIFDVLAA-------QMAALGSPPRVKCRGCDATAVAIGVA 87
           L+ T+  P+ L++    + LAA         AALG  PRV   G  A  V  GVA
Sbjct: 205 LVRTRSGPFVLAQAATLEELAAGKARLLPPAAALGDMPRVTVSGRAAARVLHGVA 259

>VGLB_SHV1 (Q04464) Glycoprotein B precursor|
          Length = 920

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -2

Query: 441 INRHTTAIILRSRWNTANPPSS 376
           I+RH T ++LR R NTA PPSS
Sbjct: 886 ISRHLTDMVLRKR-NTARPPSS 906

>PME3_CAEEL (Q867X0) Poly(ADP-ribose) glycohydrolase pme-3 (EC 3.2.1.143) (Poly|
           ADP-ribose metabolism enzyme 3)
          Length = 781

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 97  MATAVASQPRHFTLGGEPR-AAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQIS 273
           +A  VA +P HF   GEP  AA C     ++   D   G  F   +   L  K F   + 
Sbjct: 697 IAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLPHKHFEFYVF 756

Query: 274 KR-KCYLTSS 300
            R   YL+SS
Sbjct: 757 DRISTYLSSS 766


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,550,714
Number of Sequences: 219361
Number of extensions: 1165611
Number of successful extensions: 2697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2697
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)