ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2730 Score = 172 bits (87), Expect = 7e-40 Identities = 240/291 (82%) Strand = Plus / Plus Query: 169 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 228 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 46 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 105 Query: 229 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 288 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| Sbjct: 106 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctat 165 Query: 289 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 348 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 166 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 225 Query: 349 aggagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggct 408 |||||||||||| |||| |||||||||||||||||| | | |||||| | |||| Sbjct: 226 aggagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggct 285 Query: 409 tctcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 459 |||||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 286 tctcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 336
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 171 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 230 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 23827832 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 23827891 Query: 231 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 290 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 23827892 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 23827951 Query: 291 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 350 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 23827952 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 23828011 Query: 351 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 410 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 23828012 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 23828071 Query: 411 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 459 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 23828072 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 23828120 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 20452592 accgccgtggcgtcgcagccg 20452572
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 171 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 230 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 117032 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 117091 Query: 231 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 290 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 117092 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 117151 Query: 291 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 350 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 117152 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 117211 Query: 351 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 410 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 117212 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 117271 Query: 411 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 459 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 117272 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 117320
>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_H02 Length = 108603 Score = 168 bits (85), Expect = 1e-38 Identities = 238/289 (82%) Strand = Plus / Plus Query: 171 cagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcagaag 230 ||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||||| Sbjct: 19536 cagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcagaag 19595 Query: 231 tgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctactt 290 ||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| |||| || Sbjct: 19596 tgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagctattt 19655 Query: 291 aacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaatttag 350 | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||||| Sbjct: 19656 caggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaatttag 19715 Query: 351 gagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggcttc 410 |||||||||| |||| |||||||||||||||||| | | |||||| | |||||| Sbjct: 19716 gagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggcttc 19775 Query: 411 tcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 459 |||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 19776 tcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 19824
>dbj|AK065903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049J03, full insert sequence Length = 2736 Score = 165 bits (83), Expect = 2e-37 Identities = 239/291 (82%) Strand = Plus / Plus Query: 169 gccagcacatcaaagatttgcaccctggacaaagcatatggattcagtttcgtatgcaga 228 ||||||||||| ||||||| ||| ||||| |||| |||||||||||| || ||||||||| Sbjct: 187 gccagcacatcgaagatttacactctggagaaagtatatggattcagattagtatgcaga 246 Query: 229 agtgttgttgatctaaggagtaaaaaattccattcccaaatttctaagagaaagtgctac 288 ||||| |||||||| |||||| ||||||| ||| | | ||| |||||||||| || | Sbjct: 247 agtgtggttgatctgaggagtcaaaaatttcatacacgtgtttataagagaaagagccat 306 Query: 289 ttaacaagttcaccgtcggaatttgagaagatcattttgagtgttagatggttagaattt 348 || | |||||| | || |||| ||||||||||||| |||| ||||||| |||||||| Sbjct: 307 ttcaggagttcagcatcagaatgtgagaagatcattcacagtgctagatggctagaattt 366 Query: 349 aggagacagaggatagcctttcagagaactagaaggtgggttcgcagtattccatcggct 408 |||||||||||| |||| |||||||||||||||||| | | |||||| | |||| Sbjct: 367 aggagacagagggtagcatttcagagaactagaaggacaatccatcttattcctttggct 426 Query: 409 tctcaagatgatggcagtggtgtgtctgttaatggagtaccacaagttgat 459 |||||||||||| |||||||| | |||||||| ||| |||||||||||| Sbjct: 427 tctcaagatgatagcagtggtttatctgttaacggatccccacaagttgat 477
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 54 cccgcgccgatctcgtcgtcggc 76 ||||||||||||||||||||||| Sbjct: 58809 cccgcgccgatctcgtcgtcggc 58787
>ref|NM_188963.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1145 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>ref|XM_507234.1| PREDICTED Oryza sativa (japonica cultivar-group), P0456B03.120 mRNA Length = 1152 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA Length = 1479 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgaccgccgtggcgtcgcagccgcg 125 |||||||| |||||||||||||||| Sbjct: 1266 cgaccgccatggcgtcgcagccgcg 1290
>gb|AC131118.4| Mus musculus BAC clone RP24-386M5 from chromosome 19, complete sequence Length = 116409 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 tcaagatgatggcagtggtgt 431 ||||||||||||||||||||| Sbjct: 55957 tcaagatgatggcagtggtgt 55977
>emb|CR734455.2|CNS0GTHI Tetraodon nigroviridis full-length cDNA Length = 719 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 cagcaaccccgatggcgaccg 106 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>emb|CR720927.2|CNS0GJ7P Tetraodon nigroviridis full-length cDNA Length = 620 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 cagcaaccccgatggcgaccg 106 ||||||||||||||||||||| Sbjct: 255 cagcaaccccgatggcgaccg 235
>emb|CR671250.2|CNS0FGWO Tetraodon nigroviridis full-length cDNA Length = 731 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 cagcaaccccgatggcgaccg 106 ||||||||||||||||||||| Sbjct: 354 cagcaaccccgatggcgaccg 334
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgaccgccgtggcgtcgcagccgcg 125 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgaccgccgtggcgtcgcagccgcg 125 |||||||| |||||||||||||||| Sbjct: 85332 cgaccgccatggcgtcgcagccgcg 85356
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgaccgccgtggcgtcgcagccgcg 125 |||||||| |||||||||||||||| Sbjct: 1386002 cgaccgccatggcgtcgcagccgcg 1386026
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 83222 accgccgtggcgtcgcagccg 83202
>dbj|AK104119.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B12, full insert sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 133 accgccgtggcgtcgcagccg 113
>dbj|AK059408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C04, full insert sequence Length = 1152 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 accgccgtggcgtcgcagccg 123 ||||||||||||||||||||| Sbjct: 136 accgccgtggcgtcgcagccg 116
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 aaaaaattccattcccaaatttcta 274 ||||||||| ||||||||||||||| Sbjct: 1528447 aaaaaattcaattcccaaatttcta 1528423
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cgaccgccgtggcgtcgcagccgcg 125 |||||||| |||||||||||||||| Sbjct: 1385999 cgaccgccatggcgtcgcagccgcg 1386023
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 1281622 aagtcaaatgaaggaaataa 1281603
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tggcgaccgccgtggcgtcg 117 |||||||||||||||||||| Sbjct: 68893 tggcgaccgccgtggcgtcg 68912
>gb|AE009362.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 132 of 187 of the complete sequence Length = 11612 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgatggcgaccgccgtggcg 114 |||||||||||||||||||| Sbjct: 2204 cgatggcgaccgccgtggcg 2223
>gb|AE008251.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 55 of 187 of the complete sequence Length = 19961 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 cgatggcgaccgccgtggcg 114 |||||||||||||||||||| Sbjct: 14334 cgatggcgaccgccgtggcg 14315
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ccgcgccgatctcgtcgtcg 74 |||||||||||||||||||| Sbjct: 3208288 ccgcgccgatctcgtcgtcg 3208307
>gb|AC148136.3| Callicebus moloch clone LB5-135M4, complete sequence Length = 121700 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 58690 aagtcaaatgaaggaaataa 58671
>gb|AC125372.4| Mus musculus BAC clone RP24-505G5 from chromosome 7, complete sequence Length = 131080 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 aggagacagaggatagcctt 368 |||||||||||||||||||| Sbjct: 102269 aggagacagaggatagcctt 102250
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gatctcgtcgtcggcctcga 81 |||||||||||||||||||| Sbjct: 1541173 gatctcgtcgtcggcctcga 1541154
>gb|AC183336.3| Colobus guereza clone CH272-275F14, complete sequence Length = 89721 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 26435 aagtcaaatgaaggaaataa 26416
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 tgtctgttaatggagtacca 450 |||||||||||||||||||| Sbjct: 139005 tgtctgttaatggagtacca 139024
>gb|AC146885.3| Callithrix jacchus clone CH259-349L5, complete sequence Length = 213940 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 126714 aagtcaaatgaaggaaataa 126695
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 1148187 aagtcaaatgaaggaaataa 1148168
>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence Length = 181955 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 caaatttctaagagaaagtgctac 288 ||||||||| |||||||||||||| Sbjct: 162945 caaatttcttagagaaagtgctac 162922
>gb|AF546139.1|AF546140S2 Amycolatopsis orientalis PksE (pksE) and TebC (tebC) genes, complete cds Length = 6262 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cgtcgtcggcctcgaggagcagca 90 |||||||||| ||||||||||||| Sbjct: 1489 cgtcgtcggcgtcgaggagcagca 1466
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ccgcgccgatctcgtcgtcg 74 |||||||||||||||||||| Sbjct: 2805030 ccgcgccgatctcgtcgtcg 2805011
>gb|AC139303.3| Cercopithecus aethiops clone CH252-456L3, complete sequence Length = 179499 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 137235 aagtcaaatgaaggaaataa 137216
>emb|CR762427.15| Zebrafish DNA sequence from clone DKEY-253I9 in linkage group 1, complete sequence Length = 209003 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 tgatggcagtggtgtgtctg 436 |||||||||||||||||||| Sbjct: 167192 tgatggcagtggtgtgtctg 167173
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aagtcaaatgaaggaaataa 484 |||||||||||||||||||| Sbjct: 1268691 aagtcaaatgaaggaaataa 1268672 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,192,328 Number of Sequences: 3902068 Number of extensions: 4192328 Number of successful extensions: 76220 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75786 Number of HSP's gapped (non-prelim): 429 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
