ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19b12 |
|---|---|
| Clone Library Name | barley_pub |
>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)| Length = 1411 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/78 (28%), Positives = 36/78 (46%) Frame = +2 Query: 11 ASASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRSDLVQSSERARAPR 190 A+++P + PR A+P P T V +AGKR+ S +S +S AP Sbjct: 296 AASAPAKESPRKGAAPAPPGKTG---PAVAKAQAGKREEDS----QSSSEESDSEEEAPA 348 Query: 191 VSGCAGSVPRGRPSPSAA 244 + +G P+ R + + A Sbjct: 349 QAKPSGKAPQVRAASAPA 366
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 30.4 bits (67), Expect = 2.3 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = +1 Query: 82 AAAKSGPPAS---GQAQIPFQVFASIRLGPIERASTRAPR*RLCRIGSERTAVAVGGGST 252 AAA S PP+S G + P ++ A+ R P +A +P R G+ + V G T Sbjct: 377 AAAVSAPPSSRSRGGRRDP-RLPAAPRAAPAAQARACSPEPREEGRGA---GLGVAAGET 432 Query: 253 RGVSARSSAGCWDPRARRSS*GGPPPV 333 G A S G + RAR GPP V Sbjct: 433 AGWGAGSEEGRGERRARLLGEAGPPRV 459
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 30.0 bits (66), Expect = 3.1 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Frame = +1 Query: 61 HTRQHSL----AAAKSGPPA--------------SGQAQIPFQVFASIRLGPIERASTRA 186 HT HSL A K PA SGQAQ P V + ++ P RA Sbjct: 12 HTHTHSLTLFCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALRGP 71 Query: 187 PR*RLCRIGSERTAVAVGGGSTRGVSARSSAG 282 P CR G R A ++ G+S+R++ G Sbjct: 72 PNFLACRSGGFRAAQSL------GLSSRAAQG 97
>K0586_HUMAN (Q9BVV6) Protein KIAA0586| Length = 1533 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = -2 Query: 320 PPHELLRARGSQHPALLLAETPRVDP---PPTATAVLS 216 P E+ +G PA++L TP V P PP A AV + Sbjct: 1078 PVKEICAEKGDDMPAIMLVNTPTVTPTTTPPPAAAVFT 1115
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -2 Query: 350 DETRRSTGGGPPHELLRARGSQHPALLLAETPRVDPPPTA-TAVLSE 213 +ET R GG PH LL A S+ L+E V P T+ T V+ E Sbjct: 148 EETPRGQGGTQPHRLLLAEDSEEEVDSLSERCVVKGPKTSLTTVIPE 194
>TFTE_BURCE (Q45072) Maleylacetate reductase (EC 1.3.1.32)| Length = 352 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Frame = +1 Query: 82 AAAKSGPPASGQAQIPFQVFASIRLGPIERASTRAP-------R*RLCRIGSERTAVAVG 240 A S P S A+ + S +G RA+ P R R+G++ AVA+G Sbjct: 35 ALVLSTPEQSADAERVAGILGSRAVGVFPRATMHVPIELAREARLEASRLGAD-CAVAIG 93 Query: 241 GGSTRGV 261 GGST G+ Sbjct: 94 GGSTTGL 100
>GIDA_METCA (Q60CS5) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 625 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 188 GARVLARSIGPSLIEAKTWNGICACPL 108 GAR+ AR I P +A++WN + PL Sbjct: 477 GARLAARRIRPDSSQAESWNALTEIPL 503
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 28.9 bits (63), Expect = 6.8 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Frame = +2 Query: 14 SASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRS-DLVQSSERARAPR 190 S S R RSR+ ++ + + + +R K K SR RS D +S +R+P+ Sbjct: 216 SRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPK 275 Query: 191 VSGCAGSVPRGRPSPS--AADRRAES 262 + S PRG SPS + RR+ S Sbjct: 276 KVDRSPSPPRGSRSPSEKGSPRRSRS 301
>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 542 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18 C + G F K+ W V E+ G ED+EEG+ Sbjct: 356 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 390
>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) Length = 676 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +1 Query: 295 RARRSS*GGPPPVDLLVSSQPPVRASARRLGR 390 R S GG PP D SQPP RAS ++L R Sbjct: 543 RDLNSKGGGSPPRD---DSQPPERASTKKLSR 571
>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18 C + G F K+ W V E+ G ED+EEG+ Sbjct: 359 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 393
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.5 bits (62), Expect = 8.9 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Frame = +1 Query: 151 RLGPIERASTRAPR*RLCRIGSERTAVAVGGGSTRGVSARSSAGC-WDPRARRSS*GGP- 324 RLGP R R R + G R ++ G S+ S G W + R + P Sbjct: 135 RLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPR 194 Query: 325 --PPVDLLVSSQPPVRAS 372 PP +S PP RAS Sbjct: 195 ATPPTWQRSTSMPPSRAS 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,831,506 Number of Sequences: 219361 Number of extensions: 1184901 Number of successful extensions: 4269 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4268 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
