ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19b09 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 213 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 118 PP PN +PTS+ T PP P+ SIH F Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 32.7 bits (73), Expect = 0.60 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Frame = +1 Query: 1 KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156 K S+P PPP P AA PG RG+ RG E ++ E L R D Sbjct: 23 KLESVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD----- 74 Query: 157 AAGWSCTCASGTDGIRP 207 A W T ++GT G P Sbjct: 75 -ALWISTSSAGTGGAEP 90
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 32.0 bits (71), Expect = 1.0 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -2 Query: 450 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 298 + S +P+ T+ +L + D +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 297 XXXXXXXXXXXXVHNDEDGDEGRLPS-------IFPPRPNAISPTSTCTGP-PRCTRP 148 ++G E + P + P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPWDNGTESKAPDMTSSTSPVTTPTPNATSPTPAVTTPTPNATSP 537
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 30.8 bits (68), Expect = 2.3 Identities = 26/74 (35%), Positives = 30/74 (40%) Frame = +1 Query: 13 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 192 +P PP P G P PG+ GA S SEP + A P AG SG Sbjct: 97 LPPAPPAPPPGPEPASPGQAGAPAA---PPSPAWSEP--EAALEQEPGPAG------SGE 145 Query: 193 DGIRPRREDGRQAA 234 G+R R GR A Sbjct: 146 PGLRQRGRRGRSRA 159
>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 145 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +1 Query: 67 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 210 R+G R W AA +EPLVD + R RA G T A+G G + R Sbjct: 86 RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 30.4 bits (67), Expect = 3.0 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Frame = +1 Query: 1 KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156 K S+P PPP P AA PG RG+ RG E ++ E L R D Sbjct: 23 KLESVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD----- 74 Query: 157 AAGWSCTCASGTDGIRP 207 A W T ++G G P Sbjct: 75 -ALWISTSSAGAGGAEP 90
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 30.4 bits (67), Expect = 3.0 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Frame = +1 Query: 1 KHSSIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPR 156 K S+P PPP P AA PG RG+ RG E ++ E L R D Sbjct: 23 KLESVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD----- 74 Query: 157 AAGWSCTCASGTDGIRP 207 A W T ++G G P Sbjct: 75 -ALWISTSSAGAGGAEP 90
>DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 141 Score = 30.0 bits (66), Expect = 3.9 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +1 Query: 67 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR---REDGRQAAL 237 R+G R W AA +EPLVD + + RA G T A+G G + R DG L Sbjct: 82 RKGRRPTWNAAAPGDVAEPLVDEV-VAQLRALG--ATVATGRFGAQMRVSLTNDGPFTVL 138 Query: 238 VAV 246 V V Sbjct: 139 VEV 141
>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding| protein) (CRP2BP) (CRP2-binding partner) Length = 782 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 22 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADIN 147 PPP + + P + GR+ RG Q +S E DR DI+ Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 10 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 120 ++PS P DP GA GR G RG W A + S + Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 10 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 120 ++PS P DP GA GR G RG W A + S + Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 30.0 bits (66), Expect = 3.9 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -2 Query: 450 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 298 + S +P+ T+ +L + +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 297 XXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAISPTSTCTGP-PRCTRP 148 ++G E + P ++ P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 30.0 bits (66), Expect = 3.9 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -2 Query: 450 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 298 + S +P+ T+ +L + +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 297 XXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAISPTSTCTGP-PRCTRP 148 ++G E + P ++ P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 447 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +1 Query: 1 KHSSIPSP---PPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWS 171 +HS + SP PP G P+ PG R RG + SQQ+S +V + IN G Sbjct: 198 RHSYLRSPYDPPPNRQAGGLPRFPGSRSHRGAVID--SQQASGTIV-QIVINNKHKHGQV 254 Query: 172 C 174 C Sbjct: 255 C 255
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +1 Query: 217 DGRQAALVAVFVVVHDDHRRGVCGALRGGRLDDDVVHRLPGR-ADFKQEVGATRGI 381 DGR+ + F+VV + H+ + + LD +++H +P ++ + VGA + + Sbjct: 106 DGRRPSKQRTFIVVKNCHKHHISTEMELSMLDLEILHSIPETPVEYAEYVGAVKTV 161
>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC| Length = 249 Score = 29.3 bits (64), Expect = 6.6 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +1 Query: 10 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 144 S P PPP P A P P R A G Q A + + + D+ Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163
>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog| Length = 1121 Score = 29.3 bits (64), Expect = 6.6 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = +2 Query: 371 LEVSTSNKKTEVKDQRAEVGFGE---------TEETATSGNAGSEEFEDTDNNDNV 511 +EV TSN KD+ +E GFGE + GN+G + F ++D D V Sbjct: 349 IEVPTSNFS---KDENSEAGFGERMVMQLQEAQQPLGVDGNSGLQLFSNSDAIDTV 401
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = +1 Query: 10 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRP 153 S PSPP RDP G Q PG + G+ + A SE R D RP Sbjct: 353 SEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPR-DSPRP 398
>SCG1_RAT (O35314) Secretogranin-1 precursor (Secretogranin-I) (SgI)| (Chromogranin B) (CgB) (Glucagonoma peptide) [Contains: GAWK peptide; CCB peptide] Length = 675 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +2 Query: 350 SNKRSEPLEVSTSNKKTEVKDQRAEVGFGETEETATSGNAGSEEFEDT 493 SNKRSE S KK E RAE F E E+T + + E E+T Sbjct: 198 SNKRSE-----ASAKKKEESVARAEAHFVELEKTHSREQSSQESGEET 240
>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)| Length = 413 Score = 28.9 bits (63), Expect = 8.6 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%) Frame = +1 Query: 4 HSSIPS---------PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEP 123 H +PS P PRD A PQ PGR A G+ AA+ + P Sbjct: 22 HEPVPSLRGPPTTAVPCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70
>CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 450 Score = 28.9 bits (63), Expect = 8.6 Identities = 20/57 (35%), Positives = 25/57 (43%) Frame = +1 Query: 4 HSSIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSC 174 H S PPP G + PG R RG + SQQ+S +V + IN G C Sbjct: 201 HRSHYDPPPSRQAGGLSRFPGARSHRGALMD--SQQASGTIV-QIVINNKHKHGQVC 254
>HM26_CAEEL (P34522) Homeobox protein ceh-26| Length = 586 Score = 28.9 bits (63), Expect = 8.6 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Frame = +2 Query: 302 GAWMMTSSTVFPVEPTSNKRSEPLEVSTSNKK-----TEVKDQRAEVGFGET--EETATS 460 GA SS TSN S P STS+KK TE + A + + E + + Sbjct: 71 GASTSVSSNSSSSSSTSNTNSTPSSSSTSSKKSTEGMTETETMTASIEQEKVIQNEESEA 130 Query: 461 GNAGSEEFEDTDNN 502 G G EE +D N+ Sbjct: 131 GKDGMEEHDDGMND 144
>LGT_MYCTU (O06131) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 468 Score = 28.9 bits (63), Expect = 8.6 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 514 WNIVIIVSVLEFLRASIAGCRRLLGFTKANFCS 416 WN+++ V+++ R I G RL GF A +C+ Sbjct: 203 WNVLVFVALIYIDRRFIIGHGRLFGFYVAFYCA 235
>LGT_MYCBO (Q7VEW5) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 468 Score = 28.9 bits (63), Expect = 8.6 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 514 WNIVIIVSVLEFLRASIAGCRRLLGFTKANFCS 416 WN+++ V+++ R I G RL GF A +C+ Sbjct: 203 WNVLVFVALIYIDRRFIIGHGRLFGFYVAFYCA 235
>GCSP_MYCPA (Q73ZQ6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 941 Score = 28.9 bits (63), Expect = 8.6 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = +1 Query: 187 GTDGIRP--RREDGRQAALVAVF--VVVHDDHRRGVCGALRGGRLDDDVVHRLPGRADFK 354 G +G+ RR G A+ A VVHD R D V+ R+PGRAD Sbjct: 353 GAEGLTAIARRVHGHAEAIAAALGTAVVHD-------------RYFDTVLARVPGRADEV 399 Query: 355 QEVGATRGINI 387 RGIN+ Sbjct: 400 IAAAKARGINL 410
>XKR6_RAT (Q5GH57) XK-related protein 6| Length = 638 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 13 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 132 IP PP +P+ APQ PG RG + A ++Q + D Sbjct: 517 IPLPPDVEPM--APQTPGYRGTQVTPTRAVTEQQEDLTAD 554
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 16 PSPPPRDPLGAAPQLPGRRGARG 84 PS PPR GAAPQ P R+ G Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419
>XKR6_HUMAN (Q5GH73) XK-related protein 6| Length = 641 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 13 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 132 IP PP +P+ AP++PG RG + A ++Q + D Sbjct: 520 IPLPPDVEPM--APEIPGYRGTQVTPTRAVTEQQEDLTAD 557 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,652,896 Number of Sequences: 219361 Number of extensions: 1422610 Number of successful extensions: 6574 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5757 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6549 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
