ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19b06 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 262 bits (670), Expect = 3e-70 Identities = 123/135 (91%), Positives = 129/135 (95%) Frame = +1 Query: 85 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 264 MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 265 RIATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 444 RIAT+ELFR H EAQDFLFIATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 445 GIIDPDCRLIGLHLY 489 GIIDPDCRLIGLHLY Sbjct: 121 GIIDPDCRLIGLHLY 135
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 258 bits (658), Expect = 8e-69 Identities = 119/135 (88%), Positives = 127/135 (94%) Frame = +1 Query: 85 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 264 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 265 RIATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 444 RIAT+ELFR H E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQI 120 Query: 445 GIIDPDCRLIGLHLY 489 GIIDPDCRLIGLHLY Sbjct: 121 GIIDPDCRLIGLHLY 135
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 251 bits (642), Expect = 6e-67 Identities = 119/140 (85%), Positives = 127/140 (90%), Gaps = 5/140 (3%) Frame = +1 Query: 85 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQ-----PMLD 249 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQ PMLD Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60 Query: 250 VPIYGRIATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPT 429 VPIYGRIAT+ELFR H E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPT Sbjct: 61 VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120 Query: 430 DNGQIGIIDPDCRLIGLHLY 489 DNGQIGIIDPDCRLIGLHLY Sbjct: 121 DNGQIGIIDPDCRLIGLHLY 140
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 242 bits (618), Expect = 3e-64 Identities = 113/135 (83%), Positives = 123/135 (91%) Frame = +1 Query: 85 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 264 MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60 Query: 265 RIATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 444 RIAT+ELFR H EAQDFLF+ATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 445 GIIDPDCRLIGLHLY 489 GIIDPDCR+IGLHLY Sbjct: 121 GIIDPDCRVIGLHLY 135
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 149 bits (375), Expect = 5e-36 Identities = 69/135 (51%), Positives = 102/135 (75%), Gaps = 2/135 (1%) Frame = +1 Query: 91 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 270 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 271 ATIELFRSHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 444 A +ELFR E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 445 GIIDPDCRLIGLHLY 489 GIIDP+CR+IGL LY Sbjct: 122 GIIDPECRMIGLRLY 136
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 146 bits (369), Expect = 3e-35 Identities = 68/135 (50%), Positives = 101/135 (74%), Gaps = 2/135 (1%) Frame = +1 Query: 91 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 270 ++NYVVTA KPT+V+ +FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 271 ATIELFRSHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 444 A +ELFR E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 445 GIIDPDCRLIGLHLY 489 GIIDP+CR+IGL LY Sbjct: 122 GIIDPECRMIGLRLY 136
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 67.0 bits (162), Expect = 3e-11 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 279 YV HKP+S+ ++ F N+IVAK +E++ L + I+ +I + Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62 Query: 280 ELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTR-SMGDVSDRIGRPTDNGQIGIID 456 + F+ + D + +AT+ +++ L WDA + + + D S+R R + +G + ++D Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLVD 122 Query: 457 PDCRLIGLHLY 489 P R+I LH+Y Sbjct: 123 PFQRVICLHVY 133
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 46.2 bits (108), Expect = 5e-05 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 273 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69 Query: 274 TIELFRSHNEAQDFLFIATERYKFCVLQW 360 T+ FR ++D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSSKDYIIIGSDSGRITIIEY 98
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 273 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69 Query: 274 TIELFRSHNEAQDFLFIATERYKFCVLQW 360 T+ FR +D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSNKDYIIIGSDSGRITIIEY 98
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 267 Y +T SV+ + VG F+G Q +IVAK +R+E LL P +D + +G Sbjct: 7 YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64 Query: 268 IATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSEL 381 I ++ FR ++D++ + ++ + +L++ + + L Sbjct: 65 IRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSL 102
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 273 Y ++ P++++ + +G F+G + ++ A +R+ ++ P QG + P++ ++G I Sbjct: 10 YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69 Query: 274 TIELFRSHNEAQDFLFIATERYKFCVLQW 360 + FR ++D+L IA++ + ++++ Sbjct: 70 DLASFRLAGSSKDYLIIASDSGRITIVEY 98
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +1 Query: 100 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 273 Y +T PT+V+ + +G F+G + ++ A +R+ + P QG + +L I+G + Sbjct: 10 YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69 Query: 274 TIELFRSHNEAQDFLFIATERYKFCVLQW 360 I FR +D++ +AT+ + ++++ Sbjct: 70 AIASFRLAGSHKDYIILATDSGRITIIEY 98
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 35.4 bits (80), Expect = 0.084 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Frame = +1 Query: 106 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 276 +T PT+VS + VG+F+G Q L V T++EI L T L ++ +G I Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65 Query: 277 IELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGII 453 I FR +D++ ++ + +L++ + +V + G R GQ + Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHFESLYQEVFGKSGSRRIVPGQFLAV 125 Query: 454 DPDCR 468 DP R Sbjct: 126 DPKGR 130
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 35.4 bits (80), Expect = 0.084 Identities = 29/81 (35%), Positives = 41/81 (50%) Frame = +2 Query: 248 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAAL 427 T Y + +SSS+LT SSSL TSS+S + + N + S P L +S+A Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSA- 114 Query: 428 RTMDRLGSSTLTVDLLAFTSM 490 T L SS+ T LA +S+ Sbjct: 115 -TSSSLASSSTTSSSLASSSI 134
>YR648_MIMIV (Q5UR09) Hypothetical protein R648| Length = 400 Score = 32.3 bits (72), Expect = 0.71 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Frame = +1 Query: 97 NYVVTAHKPTSVSHSCVGNFTGPH----QLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 264 N + PT ++ +C GNF + + L + +H PQ + P++ + Sbjct: 135 NIAQNSSYPTGIAINCTGNFATTNGTLTKSGLFLTCSEHGTVHSYNPQ-VDPLVSFLVLN 193 Query: 265 RIAT--IELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM--GDVSDRIGRPTD 432 T I +FR A D L++A + ++ ++ +D+ + LL GD SD I P Sbjct: 194 EQLTGEIHVFRGLAVAGDVLYLA-DFFQSKIMVFDSNYNRLLGFPFVDGDTSDPI--PIS 250 Query: 433 NGQIGIIDPDCRL 471 G I++ C L Sbjct: 251 YGPTNIVNIGCYL 263
>RIK1_SCHPO (Q10426) Silencing protein rik1| Length = 1040 Score = 32.0 bits (71), Expect = 0.93 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +1 Query: 178 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRSHNEAQDFLFIATERYKFCVL 354 L++ + +I I+L + GLQ +P++ + I +R +D+LF+ + + Sbjct: 28 LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87 Query: 355 QWDAEKSELL 384 WD + +++ Sbjct: 88 YWDEDYQKVI 97
>FCMD_HUMAN (O75072) Fukutin (EC 2.-.-.-) (Fukuyama-type congenital muscular| dystrophy protein) Length = 461 Score = 32.0 bits (71), Expect = 0.93 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 456 VDDPNLSIVRRAADAIRNISHGSSEKL*FFCVP 358 +D L ++ + + ++N SHGS+ + FFCVP Sbjct: 75 IDPLILELINKNFEQVKNTSHGSTSQCKFFCVP 107
>GPDA_TROW8 (Q83I37) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 325 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -3 Query: 453 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 298 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 148 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 199
>GPDA_TROWT (Q83G27) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 339 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = -3 Query: 453 DDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLI 298 D+P++S+V A A NI G+ + F+C+P D + V + + ++ LI Sbjct: 162 DEPSVSVVASANIATANIVAGTLKCPGFYCIPSSDIKGVEICAASKNLVALI 213
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 30.4 bits (67), Expect = 2.7 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 24/149 (16%) Frame = +1 Query: 115 HKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-------QGLQP----------- 240 H T+V S F NL+VA ++++ + P Q L P Sbjct: 9 HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRL 68 Query: 241 --MLDVPIYGRIATIELFRSHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDR 414 + +YG + +++ +D L I+ + K VLQ D + L T S+ + Sbjct: 69 ECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEED 128 Query: 415 IGRPTDNGQIGI----IDPDCRLIGLHLY 489 R G+ + +DPD R + +Y Sbjct: 129 DIRGGWTGRYFVPTVRVDPDSRCAVMLVY 157
>MSA2_PLAFJ (P50499) Merozoite surface antigen 2 precursor (MSA-2)| Length = 264 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 266 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 445 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 446 GSST 457 +ST Sbjct: 107 STST 110
>MSA2_PLAFF (P19599) Merozoite surface antigen 2 precursor (MSA-2) (Merozoite| 45 kDa surface antigen) (AG513) Length = 264 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 266 GSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRL 445 GS +S A T +S +R T+SAS S T +S + P IAS + R+ + Sbjct: 47 GSNTNSVGANAPNADTIASGSQRSTNSASTSTTNNGESQTTTPTAADTIASGSQRSTNSA 106 Query: 446 GSST 457 +ST Sbjct: 107 STST 110
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 354 QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEALRRE 217 Q+ E +PLR N+ L ++ +RR PP GH ++ ++ALR + Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQ 2078
>Y066_METJA (Q60377) Hypothetical protein MJ0066| Length = 480 Score = 30.0 bits (66), Expect = 3.5 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -3 Query: 459 RVDDPNLSIVRRAADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLIVRAEE- 283 RV L++V +++ I+N+ G K+ FF +D + + N EE L+VRA E Sbjct: 177 RVVGVGLAVV--SSEDIKNMEKGKVVKVRFFIKDNEDYKPGKIYDNLEEAFDLMVRANEG 234 Query: 282 -LDRRDPPIYGHVQHRLEALRR 220 +D + G +++ E +++ Sbjct: 235 VIDNYERNAIGFIKNTYEKIKK 256
>SNX41_SCHPO (O60107) Sorting nexin-41| Length = 586 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 254 PYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSF 382 P+ G RS+SSA+ + P+ S + +S + +Q N+SF Sbjct: 9 PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESF 51
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 251 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 352 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 251 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 352 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 251 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 352 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 363 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 235 +PL A VP G EE ++V + R PP+ GH + +L Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796
>CLPB_CHLPN (Q7AJA9) Chaperone clpB| Length = 866 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 339 VPLRGNEEEVLGLIVRAEELDRRDPPIYGH----VQHRLEALRREEVDLDAG 196 +P+ E E+ LIV+ E + R P Y +Q ++ALR E L G Sbjct: 409 LPIDEKERELAALIVKQEAIKREQSPSYQEEADAMQKSIDALREELASLRLG 460
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +2 Query: 269 SRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAALRTMDRLG 448 S SSS+ T P +SSS +SS+S S + + S S +S++ + Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202 Query: 449 SSTLTVDLLAFTS 487 SS+ +V + + TS Sbjct: 203 SSSSSVPITSSTS 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,705,576 Number of Sequences: 219361 Number of extensions: 1105383 Number of successful extensions: 4347 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4261 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
