>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4|
           (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3)
           (NF-AT3)
          Length = 902

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
 Frame = +3

Query: 150 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAVAR---GWPLAAVDPRSAGTPSW 302
           P PG SSL S  F     D A   A C         A +R   G PL +  PR++  P W
Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225

Query: 303 SPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 431
           +P  PW                G GP    L  S  G  P+ P
Sbjct: 226 TPEDPW--------SLYGPSPGGRGPEDSWLLLSAPGPTPASP 260

>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ|
          Length = 1018

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 156 PGGSSLHSPGFLLQPPDLARSTAICFRRAVARGWPLAAVDP 278
           P G + H  GFL +    A+ TA    R    G P+  VDP
Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866

>Y1163_HAEIN (Q57252) Protein HI1163|
          Length = 1027

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 153 QPGGSSLHSPGFLLQPPDLARSTAICFRRAVARGWPLAAVDP 278
           +P G ++H  GFL +    A++ A    R    G PL  VDP
Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867

>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 51)
           (Ubiquitin-specific-processing protease 51)
           (Deubiquitinating enzyme 51)
          Length = 711

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 135 KP*PRPQPGGSSLHSPGFLLQPPDLAR 215
           KP PRPQP   S   PG    PP  AR
Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129

>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5|
          Length = 435

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 297 SWSPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGP 422
           S+SP  P Q+             +G  P +PS++  +RGV P
Sbjct: 240 SFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTP 281

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 319 QGTGGLQEG---VPADLGSTAARGHPLATARRKQMAVERARSGG 197
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +2

Query: 359 PGQRRRSSSPLPLAVH------PRRRSISPLPLAAHPRRSRFS 469
           P +RRRS SP P          PRRRS SP P    P   R+S
Sbjct: 548 PARRRRSPSPPPPPRRRRSPSLPRRRSPSPPPRRRSPSPRRYS 590

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 319 QGTGGLQEG---VPADLGSTAARGHPLATARRKQMAVERARSGG 197
           QG GG +E    V  D G+  + GHPL+ A +   A+     GG
Sbjct: 29  QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 29/96 (30%), Positives = 32/96 (33%)
 Frame = +3

Query: 144 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAVARGWPLAAVDPRSAGTPSWSPPVPWQ 323
           PR     S   SPG  +QP   A   A C   A   G P AA     +  P+  PP    
Sbjct: 189 PRLSRSSSETRSPGGTVQPKSPAPLAARC--SASRAGCPTAA----GSLLPAPRPP---- 238

Query: 324 SXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 431
                           A PA PS  R  R   PS P
Sbjct: 239 -------ASSASSPQAAAPAAPSATRLPRRTTPSAP 267

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 21/66 (31%), Positives = 26/66 (39%)
 Frame = +3

Query: 120 PFHSAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAVARGWPLAAVDPRSAGTPS 299
           P  +A P P P PGG+ +  P     PP L  S  +     +  G  L    P   G P 
Sbjct: 666 PGATAIPPPPPLPGGTGIPPP-----PPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG 720

Query: 300 WSPPVP 317
             PP P
Sbjct: 721 IPPPPP 726

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
 Frame = +2

Query: 218 HRHLLPPGRRQGMAPCRRRSEVRRHP----------LLEPXXXXXXXXXXXXXXXXTPGQ 367
           HR+   P RR G  P RRRS  R H           L                       
Sbjct: 436 HRYSRSPARRGGYGP-RRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLT 494

Query: 368 RRRSSSPLPLAVHPRRRSISPLPLAAHPRRSRFSR 472
           R RS SP P     R RS S  P +  P R + +R
Sbjct: 495 RSRSHSPSPSQSRSRSRSRSQSP-SPSPAREKLTR 528

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
            activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
 Frame = -2

Query: 472  AAETAAPRVGRQRE--------GTDGPTPRVDRQREGTAGPAPLXXXXXXXXXXXXADCQ 317
            AA +AAPR GR+R+        G  GP P   ++    A  +                  
Sbjct: 717  AAASAAPREGRKRKSPGPARPPGGGGPRPPKTKKSGADAPGSDARAPLPAPAPPSTPPGP 776

Query: 316  GTGGLQEGVPADLGSTAARGHPLATARRKQMAVERARSGGWRRKP 182
                 Q   P    +  AR  P+A +RR     +    GGWRR+P
Sbjct: 777  EPAPAQPAAPR-AAAAQARPRPVAVSRRPAEGPDPL--GGWRRQP 818

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 307 GLQEGVPADLGSTAARGH-PLATARRKQMAVERARSG 200
           G ++G+PA +GS A R +  L   RR Q  V   RSG
Sbjct: 627 GRRDGLPAHIGSMAQRAYWALLNQRRDQSIVALGRSG 663

>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO|
           domain-containing protein 1)
          Length = 1000

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = +3

Query: 129 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAVARGWP-LAAVDPRSAGTPSWS 305
           S +P P   P GSS   P     PP   ++ A     A  +  P  A   P+  GTP   
Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850

Query: 306 PPVPW 320
            P P+
Sbjct: 851 SPAPY 855


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,667,885
Number of Sequences: 219361
Number of extensions: 923015
Number of successful extensions: 3694
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)