ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl19b01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3790 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 392 gatggatcctattgaaatcaaggataatgaagggagtcctgtagagatgcttgttgag 449 ||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| Sbjct: 401 gatggatcctattgaaatcaaggatggtgaagagcattcaatagagatgcttgttgag 458
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 392 gatggatcctattgaaatcaaggataatgaagggagtcctgtagagatgcttgttgag 449 ||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| Sbjct: 22782060 gatggatcctattgaaatcaaggatggtgaagagcattcaatagagatgcttgttgag 22782003
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1092_A07 Length = 137081 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 392 gatggatcctattgaaatcaaggataatgaagggagtcctgtagagatgcttgttgag 449 ||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| Sbjct: 101402 gatggatcctattgaaatcaaggatggtgaagagcattcaatagagatgcttgttgag 101345
>dbj|AK102232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088A08, full insert sequence Length = 3790 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 392 gatggatcctattgaaatcaaggataatgaagggagtcctgtagagatgcttgttgag 449 ||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| Sbjct: 401 gatggatcctattgaaatcaaggatggtgaagagcattcaatagagatgcttgttgag 458
>dbj|AK066055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J15, full insert sequence Length = 1451 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 392 gatggatcctattgaaatcaaggataatgaagggagtcctgtagagatgcttgttgag 449 ||||||||||||||||||||||||| ||||| | | | ||||||||||||||||| Sbjct: 418 gatggatcctattgaaatcaaggatggtgaagagcattcaatagagatgcttgttgag 475
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 cgccaacgccagcgcctccatt 49 |||||||||||||||||||||| Sbjct: 2192586 cgccaacgccagcgcctccatt 2192607
>ref|XM_956972.1| Neurospora crassa OR74A hypothetical protein (NCU05294.1) partial mRNA Length = 2922 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 acacagccacgctcgccgcct 89 ||||||||||||||||||||| Sbjct: 2204 acacagccacgctcgccgcct 2224
>ref|XM_324650.1| Neurospora crassa OR74A hypothetical protein (NCU05294.1) partial mRNA Length = 2922 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 acacagccacgctcgccgcct 89 ||||||||||||||||||||| Sbjct: 2204 acacagccacgctcgccgcct 2224
>ref|XM_947451.1| Theileria annulata strain Ankara protein kinase (TA11720) partial mRNA Length = 2427 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 tattgaaatcaaggataatga 421 ||||||||||||||||||||| Sbjct: 1215 tattgaaatcaaggataatga 1235
>gb|AC161424.3| Mus musculus BAC clone RP23-252J6 from chromosome 9, complete sequence Length = 244497 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tggcctctcttcttgctttct 219 ||||||||||||||||||||| Sbjct: 64564 tggcctctcttcttgctttct 64584
>ref|NM_141846.2| Drosophila melanogaster CG6830-RA (CG6830), mRNA Length = 2782 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 tcaagaacggagaagaatatc 390 ||||||||||||||||||||| Sbjct: 866 tcaagaacggagaagaatatc 886
>gb|AY070944.1| Drosophila melanogaster RE03989 full length cDNA Length = 2795 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 tcaagaacggagaagaatatc 390 ||||||||||||||||||||| Sbjct: 866 tcaagaacggagaagaatatc 886
>gb|AC141872.8| Mus musculus BAC clone RP24-342D9 from chromosome 9, complete sequence Length = 161523 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 tggcctctcttcttgctttct 219 ||||||||||||||||||||| Sbjct: 104874 tggcctctcttcttgctttct 104894
>gb|AC007805.5|AC007805 Drosophila melanogaster, chromosome 3R, region 86F-86F, BAC clone BACR11G22, complete sequence Length = 170324 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tcaagaacggagaagaatatc 390 ||||||||||||||||||||| Sbjct: 56606 tcaagaacggagaagaatatc 56586
>gb|AE003692.3| Drosophila melanogaster chromosome 3R, section 30 of 118 of the complete sequence Length = 227847 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tcaagaacggagaagaatatc 390 ||||||||||||||||||||| Sbjct: 159886 tcaagaacggagaagaatatc 159866
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tctcccactccttccattccacac 72 ||||||||||||||| |||||||| Sbjct: 107995 tctcccactccttcctttccacac 107972
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tattgaaatcaaggataatg 420 |||||||||||||||||||| Sbjct: 581858 tattgaaatcaaggataatg 581877
>ref|XM_959571.1| Neurospora crassa OR74A hypothetical protein (NCU02042.1) partial mRNA Length = 1407 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ccttccattccacacagcca 77 |||||||||||||||||||| Sbjct: 1344 ccttccattccacacagcca 1325
>ref|XM_329231.1| Neurospora crassa OR74A hypothetical protein (NCU02042.1) partial mRNA Length = 1407 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ccttccattccacacagcca 77 |||||||||||||||||||| Sbjct: 1344 ccttccattccacacagcca 1325
>gb|AE006527.1| Streptococcus pyogenes M1 GAS, section 56 of 167 of the complete genome Length = 10821 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tattgaaatcaaggataatg 420 |||||||||||||||||||| Sbjct: 10452 tattgaaatcaaggataatg 10471
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tattgaaatcaaggataatg 420 |||||||||||||||||||| Sbjct: 612840 tattgaaatcaaggataatg 612859
>gb|AC125117.4| Mus musculus BAC clone RP24-261P10 from chromosome 14, complete sequence Length = 165313 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cctccattctcccactccttccat 65 |||||||||||||||| ||||||| Sbjct: 40028 cctccattctcccactacttccat 40051
>emb|BX640540.3| Chicken DNA sequence from clone WAG-124D2, complete sequence Length = 161956 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cctctcttcttgctttctgg 221 |||||||||||||||||||| Sbjct: 97547 cctctcttcttgctttctgg 97528
>emb|AL133387.8| Human DNA sequence from clone RP11-107I14 on chromosome 10 Contains the 3' end of a novel gene, three novel genes (FLJ34886), the 5' end of the BTRC gene for beta-transducin repeat containing and four CpG islands, complete sequence Length = 157912 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cgccaacgccagcgcctcca 47 |||||||||||||||||||| Sbjct: 120924 cgccaacgccagcgcctcca 120905
>emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone B2I10 Length = 83703 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ccttccattccacacagcca 77 |||||||||||||||||||| Sbjct: 54648 ccttccattccacacagcca 54667
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcgcaggagctcgcggctcg 108 |||||||||||||||||||| Sbjct: 271334 tcgcaggagctcgcggctcg 271315
>emb|Z33103.1|MC146 M.capricolum DNA for CONTIG MC146 Length = 1309 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gccaacttttgcaatgaatt 360 |||||||||||||||||||| Sbjct: 212 gccaacttttgcaatgaatt 193
>gb|AC122146.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0022I16, complete sequence Length = 126133 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tctcccactccttccattccacac 72 ||||||||||||||| |||||||| Sbjct: 40927 tctcccactccttcctttccacac 40904
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gccaacttttgcaatgaatt 360 |||||||||||||||||||| Sbjct: 296602 gccaacttttgcaatgaatt 296621
>gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180869 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 attagcttgaaaaagcatatctgt 280 |||||||| ||||||||||||||| Sbjct: 69955 attagctttaaaaagcatatctgt 69978
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tctcccactccttccattccacac 72 ||||||||||||||| |||||||| Sbjct: 5344797 tctcccactccttcctttccacac 5344774
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 cgtcgtcctcgccaacgccagcgcctcc 46 ||||||||||||||||||| ||||||| Sbjct: 4733146 cgtcgtcctcgccaacgcctccgcctcc 4733119
>gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complete sequence Length = 160930 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 attatcttgaaatcaagaac 377 |||||||||||||||||||| Sbjct: 26150 attatcttgaaatcaagaac 26131
>gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complete sequence Length = 159952 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 atccatgtgcatcctcatct 256 |||||||||||||||||||| Sbjct: 62176 atccatgtgcatcctcatct 62195
>gb|AC139717.1| Homo sapiens BAC clone RP11-285D23 from 4, complete sequence Length = 69765 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gcctctcttcttgctttctg 220 |||||||||||||||||||| Sbjct: 2934 gcctctcttcttgctttctg 2915
>gb|AC132803.2| Homo sapiens chromosome 5 clone CTC-367F4, complete sequence Length = 144430 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 atccatgtgcatcctcatct 256 |||||||||||||||||||| Sbjct: 126831 atccatgtgcatcctcatct 126850
>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 aacttttgcaatgaattatc 363 |||||||||||||||||||| Sbjct: 14019 aacttttgcaatgaattatc 14038
>dbj|AP006446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1097H10 Length = 159732 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 19 cgtcgtcctcgccaacgccagcgcctcc 46 ||||||||||||||||||| ||||||| Sbjct: 50750 cgtcgtcctcgccaacgcctccgcctcc 50723
>dbj|BS000093.1| Pan troglodytes chromosome 22 clone:CH251-195G22, map 22, complete sequences Length = 52421 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctcttcttgctttctgggtg 224 |||||||||||||||||||| Sbjct: 43667 ctcttcttgctttctgggtg 43686
>dbj|AK065484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014C11, full insert sequence Length = 3543 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 tctcccactccttccattccacac 72 ||||||||||||||| |||||||| Sbjct: 3189 tctcccactccttcctttccacac 3212
>dbj|AP001689.1| Homo sapiens genomic DNA, chromosome 21q, section 33/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctcttcttgctttctgggtg 224 |||||||||||||||||||| Sbjct: 281463 ctcttcttgctttctgggtg 281482
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 tctcccactccttccattccacac 72 ||||||||||||||| |||||||| Sbjct: 5345584 tctcccactccttcctttccacac 5345561
>gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, complete sequence Length = 211446 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cctccattctcccactccttccat 65 |||||||||||||||| ||||||| Sbjct: 204469 cctccattctcccactacttccat 204446
>emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chromosome X, complete sequence Length = 186544 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 cctccattctcccactccttccat 65 ||||| |||||||||||||||||| Sbjct: 63882 cctcctttctcccactccttccat 63859
>emb|AL132818.2|HS27N19 Homo sapiens chromosome 21 Cosmid ICRFc103N1927, complete sequence Length = 38860 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctcttcttgctttctgggtg 224 |||||||||||||||||||| Sbjct: 4161 ctcttcttgctttctgggtg 4180
>dbj|AP000470.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B15H23, LL56-APP region, complete sequence Length = 151675 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctcttcttgctttctgggtg 224 |||||||||||||||||||| Sbjct: 115623 ctcttcttgctttctgggtg 115642 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,172,302 Number of Sequences: 3902068 Number of extensions: 4172302 Number of successful extensions: 80719 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80472 Number of HSP's gapped (non-prelim): 247 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
