ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_420603.1| PREDICTED: Gallus gallus similar to sodium bica... 40 1.7
2ref|XM_754826.1| Ustilago maydis 521 hypothetical protein (UM037... 40 1.7
3gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, co... 40 1.7
4dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 1.7
5dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 1.7
6ref|XM_785458.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 6.6
7emb|BX571660.1| Wolinella succinogenes, complete genome; segment... 38 6.6
8emb|AJ512686.1|WSU512686 Wolinella succinogenes nap gene cluster... 38 6.6
9gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, compl... 38 6.6

>ref|XM_420603.1| PREDICTED: Gallus gallus similar to sodium bicarbonate
           cotransporter (LOC422649), mRNA
          Length = 4408

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   gagaaggcggcgtcagaggagaag 24
           ||||||||||||||| ||||||||
Sbjct: 121 gagaaggcggcgtcataggagaag 144



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>ref|XM_754826.1| Ustilago maydis 521 hypothetical protein (UM03772.1) partial mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   aagctgcttgacgacaagga 41
            ||||||||||||||||||||
Sbjct: 1393 aagctgcttgacgacaagga 1412



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>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence
          Length = 198295

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gacaaggagctagagctaga 53
              ||||||||||||||||||||
Sbjct: 124623 gacaaggagctagagctaga 124642



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>dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-14E22, complete
             sequence
          Length = 121689

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    aggagctagagctagagcgggagc 61
             |||||||||||||||||| |||||
Sbjct: 48973 aggagctagagctagagcaggagc 48996



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>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete
              sequence
          Length = 161602

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     aggagctagagctagagcgggagc 61
              |||||||||||||||||| |||||
Sbjct: 153278 aggagctagagctagagcaggagc 153301



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>ref|XM_785458.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat domain
            6 (LOC585638), mRNA
          Length = 2337

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   ggagaagctgcttgacgac 36
            |||||||||||||||||||
Sbjct: 1263 ggagaagctgcttgacgac 1281



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>emb|BX571660.1| Wolinella succinogenes, complete genome; segment 4/7
          Length = 349926

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    aggagctagagctagagcg 56
             |||||||||||||||||||
Sbjct: 76344 aggagctagagctagagcg 76326



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>emb|AJ512686.1|WSU512686 Wolinella succinogenes nap gene cluster (napAGHBFLD genes), wrbA gene
            (partial) and ORF1 DNA (partial)
          Length = 7497

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   aggagctagagctagagcg 56
            |||||||||||||||||||
Sbjct: 7144 aggagctagagctagagcg 7162



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>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence
          Length = 253733

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    aaggagctagagctagagc 55
             |||||||||||||||||||
Sbjct: 96150 aaggagctagagctagagc 96168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 595,610
Number of Sequences: 3902068
Number of extensions: 595610
Number of successful extensions: 34358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34346
Number of HSP's gapped (non-prelim): 12
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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