ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl19a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WFDC1_HUMAN (Q9HC57) WAP four-disulfide core domain protein 1 pr... 29 3.2
2WFDC1_RAT (O70280) WAP four-disulfide core domain protein 1 prec... 29 3.2
3WFDC1_MOUSE (Q9ESH5) WAP four-disulfide core domain protein 1 pr... 29 3.2
4CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2) 29 3.2
5GDF6_MOUSE (P43028) Growth/differentiation factor 6 precursor (G... 29 4.1
6Y95_ADE02 (P03286) Hypothetical protein E-95 28 7.1
7LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-... 28 9.2
8GDF6_RAT (Q6HA10) Growth/differentiation factor 6 precursor (GDF... 28 9.2

>WFDC1_HUMAN (Q9HC57) WAP four-disulfide core domain protein 1 precursor|
           (Prostate stromal protein ps20) (ps20 growth inhibitor)
          Length = 220

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = -1

Query: 117 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 22
           P+HRRC   G         PPP  + WL QP   PR  G
Sbjct: 90  PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 126



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>WFDC1_RAT (O70280) WAP four-disulfide core domain protein 1 precursor|
           (Prostate stromal protein ps20) (ps20 growth inhibitor)
          Length = 212

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = -1

Query: 117 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 22
           P+HRRC   G         PPP  + WL QP   PR  G
Sbjct: 82  PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 118



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>WFDC1_MOUSE (Q9ESH5) WAP four-disulfide core domain protein 1 precursor|
           (Prostate stromal protein ps20) (ps20 growth inhibitor)
          Length = 211

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = -1

Query: 117 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 22
           P+HRRC   G         PPP  + WL QP   PR  G
Sbjct: 81  PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 117



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>CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2)|
          Length = 1663

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 118 SSAPPLPRRRCAPSAGGDGLAPSTNRLP 35
           SS PPLP     P+A   G+AP  ++ P
Sbjct: 396 SSTPPLPSNAAPPTAQTPGIAPQNSQAP 423



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>GDF6_MOUSE (P43028) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 454

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  TGSARGGDWLMEPGHRRRRRA 84
           +GS   G WL  PG RRRR A
Sbjct: 316 SGSPDAGSWLPSPGRRRRRTA 336



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>Y95_ADE02 (P03286) Hypothetical protein E-95|
          Length = 95

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -1

Query: 132 PAPCLPQHRRCLVGG---VRPPPAAMAWLHQPIASPRAAG 22
           P+  LP  R+  V G   V PP +  AW   P  +PR+ G
Sbjct: 48  PSVLLPGGRKTTVAGDSCVSPPLSTDAWPENPAGTPRSDG 87



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>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 115 SAPPLPRRRCAPSAGGDGLAPSTNRLPARC 26
           S PPLP R  A  AG D +    +RLP  C
Sbjct: 53  SPPPLPPRPAAVRAGRDRVGRVFSRLPPGC 82



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>GDF6_RAT (Q6HA10) Growth/differentiation factor 6 precursor (GDF-6)|
           (Growth/differentiation factor 16)
          Length = 452

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 22  TGSARGGDWLMEPGHRRRRRA 84
           +G+   G WL  PG RRRR A
Sbjct: 314 SGAPDAGSWLPSPGRRRRRTA 334


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,147,780
Number of Sequences: 219361
Number of extensions: 359681
Number of successful extensions: 1824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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