Clone Information

BLAST Search Result

Clone Name	bastl19a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	34	0.21
2	RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U...	33	0.36
3	SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1	33	0.36
4	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	33	0.46
5	RSD1_SCHPO (O13845) RNA-binding protein rsd1	32	0.79
6	NOP12_DEBHA (Q6BTS9) Nucleolar protein 12	32	0.79
7	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	32	0.79
8	GPX1_YEAST (P36014) Glutathione peroxidase 1 (EC 1.11.1.9)	32	1.0
9	RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi...	31	1.3
10	RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi...	31	1.3
11	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	31	1.8
12	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	31	1.8
13	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	31	1.8
14	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	31	1.8
15	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	30	2.3
16	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	2.3
17	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	30	2.3
18	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	30	3.0
19	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	30	3.0
20	LARK_DROME (Q94901) RNA-binding protein lark	30	3.0
21	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	30	3.0
22	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	3.0
23	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	3.0
24	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	30	3.0
25	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	3.0
26	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	30	3.0
27	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	30	3.0
28	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	30	3.0
29	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	30	3.0
30	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	30	3.9
31	SIM_DROME (P05709) Protein single-minded	30	3.9
32	PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	29	5.1
33	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	29	5.1
34	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	29	5.1
35	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	29	5.1
36	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	29	5.1
37	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	29	5.1
38	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	29	5.1
39	SNX41_ASHGO (Q759T1) Sorting nexin-41	29	6.7
40	DGTL1_MYCSM (O52199) Deoxyguanosinetriphosphate triphosphohydrol...	29	6.7
41	YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in...	29	6.7
42	FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei...	29	6.7
43	FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei...	29	6.7
44	RS9_THEAC (Q9HL08) 30S ribosomal protein S9P	29	6.7
45	GAR2_SCHPO (P41891) Protein gar2	29	6.7
46	SPEN_DROME (Q8SX83) Protein split ends	29	6.7
47	NUCL_MESAU (P08199) Nucleolin (Protein C23)	29	6.7
48	PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ...	28	8.7
49	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	28	8.7
50	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	28	8.7
51	PHEA_SHIFL (P0A9K0) P-protein [Includes: Chorismate mutase (EC 5...	28	8.7
52	PHEA_ECOLI (P0A9J8) P-protein [Includes: Chorismate mutase (EC 5...	28	8.7
53	PHEA_ECO57 (P0A9J9) P-protein [Includes: Chorismate mutase (EC 5...	28	8.7
54	NUCL_XENLA (P20397) Nucleolin (Protein C23)	28	8.7
55	SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 sn...	28	8.7
56	CX017_HUMAN (Q9NX05) Protein CXorf17 (Tumor antigen BJ-HCC-21)	28	8.7
57	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	28	8.7
58	MEI2_SCHPO (P08965) Meiosis protein mei2	28	8.7
59	PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein	28	8.7
60	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	28	8.7

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 183 STGGGMELEADENNKLLKHNGGANTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLL 362
           S   G EL   + +   + +            LP   N  +T+FIRN++ + E+ EL  L
Sbjct: 294 SIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGEL 353

Query: 363 FEQYGDIQ 386
            +Q+G+++
Sbjct: 354 LQQFGELK 361

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>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDTELKLLFEQYGDIQTL 392
           E+P RTLFI  IN +  +++L+  FE YG I+ +
Sbjct: 98  EDPFRTLFIARINYDTSESKLRREFEFYGPIKKI 131

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>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1|
          Length = 620

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKH-HGLV 422
           SRTLF+  I  +V +  L+ +FE++G +Q+L   + + HG +
Sbjct: 405 SRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFL 446

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>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 234 KHNGGANTGQTGLNG--LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           KH  G  +     NG  LP G+    TLF+  I+  V++ E++  F +YG ++
Sbjct: 22  KHRQGFPSSLKLSNGYILPEGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVK 74

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDTELKLLFEQYGDIQTLY 395
           E P   L + NI+ N+ D ++K +FE +GDI+ ++
Sbjct: 336 EIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVH 370

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>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12|
          Length = 462

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDT-----ELKLLFEQYGDIQTL 392
           E   RT+F+ N+NA+V  +     + K LF QYG IQ++
Sbjct: 155 EKAERTVFVGNVNASVVGSKPMYKKFKKLFSQYGKIQSI 193

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>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKHHGLV----IISWYYDI 446
           LP G+    T+F+  I+  +++TE++  F +YG ++ +       G+      +S+Y D+
Sbjct: 32  LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDV 91

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>GPX1_YEAST (P36014) Glutathione peroxidase 1 (EC 1.11.1.9)|
          Length = 167

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 273 NGLPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKHHGLVIISW 434
           N  P+    ++ + I N+ ++   T       QY +++ LY  YK HGLVI+++
Sbjct: 15  NPFPFNSLRNKVVLIVNVASHCAFTP------QYKELEYLYEKYKSHGLVIVAF 62

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>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           +  +R LFI N++ +V + EL+  FE+YG I+
Sbjct: 6   QRATRNLFIGNLDHSVSEVELRRAFEKYGIIE 37

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>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           +  +R LFI N++ +V + EL+  FE+YG I+
Sbjct: 6   QRATRNLFIGNLDHSVSEVELRRAFEKYGIIE 37

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>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+  + + E++  FEQYG ++
Sbjct: 28  LPEGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVK 63

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>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           S  LF+RN++   +++EL+ +F  +G I+ ++ A+
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAF 328

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>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+  +++TE++  F +YG ++
Sbjct: 32  LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVK 67

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>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+  +++TE++  F +YG ++
Sbjct: 32  LPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVK 67

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 294 NPSRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           +P   LF+ N++ NV+  +L  LFE  G+++ +   Y
Sbjct: 96  SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY 132

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>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +3

Query: 195 GMELEADENNKLLKHNGGANTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLLFEQY 374
           G+E  A++  K   +N    TG           +P +TLF+  +N    ++++K  FE Y
Sbjct: 113 GVEKAAEDLKKYDPNNDPNATG-----------DPYKTLFVSRLNYESSESKIKREFESY 161

Query: 375 GDIQTLY 395
           G I+ ++
Sbjct: 162 GPIKRVH 168

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 186 TGGGMELEADENNKL-LKHNGGANTGQTGLNGLPYGENPSRTLFIRNINA-NVEDTELKL 359
           TG  + +E  +N++     +GG+    +GL        PS+TLF+ N +A N    +L+ 
Sbjct: 63  TGRRLRVEWTKNDRGGAGRSGGSRRSSSGLR-------PSKTLFVINFDAQNTRTRDLER 115

Query: 360 LFEQYGDI 383
            FE YG I
Sbjct: 116 HFEPYGKI 123

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 309 LFIRNINANVEDTELKLLFEQYGDIQTLYTA 401
           LFIRNI+    + + + LF QYG ++ ++ A
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIA 342

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>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 232



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 32  LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 67

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 309 LFIRNINANVEDTELKLLFEQYGDI 383
           LFI N++   + TEL+ LFE+YG +
Sbjct: 9   LFIGNLDEKTQATELRALFEKYGTV 33

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>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 32  LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 67

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>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 303 RTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           +TLF+  +N +  +++L+  FE YG I+ ++  Y
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

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>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 303 RTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           +TLF+  +N +  +++L+  FE YG I+ ++  Y
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

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>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
 Frame = +3

Query: 201 ELEADENNKLL--KHNGGANTGQTGLNGLPYGENPSRT-----------LFIRNINANVE 341
           E E D  N+    K  G    G       P  E PS             LF+RN+    +
Sbjct: 254 EPEEDRENRHTESKSEGKKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAK 313

Query: 342 DTELKLLFEQYGDIQTLY 395
           + + + LF QYG+++ ++
Sbjct: 314 EEDFRQLFSQYGELEEVH 331

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>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 303 RTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           +TLF+  +N +  +++L+  FE YG I+ ++  Y
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136

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>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 303 RTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           +TLF+  +N +  +++L+  FE YG I+ ++  Y
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVY 136

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>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 362 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 397



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 197 LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 232



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 32  LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 67

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>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+  +++TE++  F +YG ++
Sbjct: 32  LPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVK 67

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>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP G+    T+F+  I+A +++TE+   F +YG ++
Sbjct: 32  LPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVK 67

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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 9/33 (27%), Positives = 24/33 (72%)
 Frame = +3

Query: 285 YGENPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           + ++    L+++N++ +V+D +LK +F +YG++
Sbjct: 326 FEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNV 358

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>SIM_DROME (P05709) Protein single-minded|
          Length = 697

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 200 HSTSSREYVVINVIYVISTGRVTHIIKNT*Q*VVVIREEIA 78
           +S SSRE  +++V YV+S   V  ++ N  Q  VV RE I+
Sbjct: 364 NSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKREPIS 404

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>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 279 LPYGE--NPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           LP+ E   P   LF+  +N   +D +L+L+F ++G I
Sbjct: 238 LPFAEVKPPENVLFVCKLNPVTQDEDLELIFSRFGKI 274

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>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 279 LPYGE--NPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           LP+ E   P   LF+  +N   +D +L+L+F ++G I
Sbjct: 238 LPFAEVKPPENVLFVCKLNPVTQDEDLQLIFSRFGPI 274

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKHHGLVIISW 434
           +RTL  +N++ N+ + ELK +FE   +I+ +    K  G+  I +
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEF 437

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>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAY 404
           S  LF+RN+  +  +++L+ +F ++G I+ ++ A+
Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAF 334

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>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 279 LPYGENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           LP      +T+FIRN++ + E+  L  + +Q+GD++
Sbjct: 316 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK 351

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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 309 LFIRNINANVEDTELKLLFEQYGDI-QTLYTAYKHHGLVIISWYYDIRSAER 461
           L+I N+ ++V + ELK LF  YG+I +    A K+   + I +  +   A++
Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKK 166

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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 288 GENPSRT-LFIRNINANVEDTELKLLFEQYGDIQT 389
           G  PS T ++++N+   + D ELK  F +YGDI +
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISS 253

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>SNX41_ASHGO (Q759T1) Sorting nexin-41|
          Length = 603

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 25/101 (24%), Positives = 34/101 (33%)
 Frame = +3

Query: 12  KELNHADDEPFELTQEIEAQVIGNLLPDDDDLLSGVLYNVGHPARANNXXXXXXXXFSTG 191
           +E +  D+ PF  T  + A  IG +   DDD LS  +       +               
Sbjct: 5   RESDEEDNNPFSGTNHLYASGIGAVPEGDDDFLSAEVDTADETVQETREQMMSRLFGECE 64

Query: 192 GGMELEADENNKLLKHNGGANTGQTGLNGLPYGENPSRTLF 314
           G  E  A          GG  +G  G  G P G +   T F
Sbjct: 65  GPRESSA----------GGWTSGSMGSIGAPDGHSDEVTEF 95

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>DGTL1_MYCSM (O52199) Deoxyguanosinetriphosphate triphosphohydrolase-like|
           protein
          Length = 428

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 24  HADDEPFELTQEIEAQVIGNL----LPDDDDL--LSGVLYNVGHPARANNXXXXXXXXFS 185
           H D+    LT  +E   IG      L  D DL  L+G+ +++GHP   +N          
Sbjct: 65  HGDNPRTRLTHSLEVAQIGRGMAIGLGCDPDLVDLAGLAHDIGHPPYGHNGERALNEIAK 124

Query: 186 TGGGMELEADENNKLL 233
             GG E  A +N ++L
Sbjct: 125 AFGGFEGNA-QNFRIL 139

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>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II|
          Length = 352

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 204 LEADENNKLLKHNGGANTGQTGLNGLPYGENPSR-TLFIRNINANVEDTELKLLFEQYGD 380
           LE     +L+  N         L+ +P  + PS   LFI NI+  V + ++K LF++Y  
Sbjct: 45  LERQSTQRLISGN------PISLDVVPEWQKPSYYMLFISNIDPEVSENDIKYLFQRYNF 98

Query: 381 I 383
           I
Sbjct: 99  I 99

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>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 285 YGENPSRTLFIRNINANVEDTELKLLFEQYGDIQTLYT-----AYKHHGLVIISWYYDIR 449
           Y   P+ +LF+RN+  +    +L+  F +YG I  +Y        +  G   +  + D+R
Sbjct: 4   YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ-FEDVR 62

Query: 450 SAE 458
            AE
Sbjct: 63  DAE 65

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>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 285 YGENPSRTLFIRNINANVEDTELKLLFEQYGDIQTLYT-----AYKHHGLVIISWYYDIR 449
           Y   P+ +LF+RN+  +    +L+  F +YG I  +Y        +  G   +  + D+R
Sbjct: 4   YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ-FEDVR 62

Query: 450 SAE 458
            AE
Sbjct: 63  DAE 65

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>RS9_THEAC (Q9HL08) 30S ribosomal protein S9P|
          Length = 129

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 201 ELEADENNKLLKHNGGANTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLLFEQY 374
           E +A + +  +K  GG  TGQ          + SRT   R I   + DTEL+ LF QY
Sbjct: 50  EDKAKDLDIAVKVRGGGVTGQA---------DASRTAIARAIVKYLNDTELENLFRQY 98

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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 297 PSRTLFIRNINANVEDTELKLLFEQYGDIQTL 392
           PS T+F+ N++ N  + +L   F   GDIQ++
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSI 395

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 285 YGENPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           Y    +RTLFI N+  ++   EL+  FE +G+I
Sbjct: 650 YHPKSTRTLFIGNLEKDITAGELRSHFEAFGEI 682

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKHHGLVIISW 434
           +RTL  +N++ N+ + ELK +FE   +I+ +    K  G+  I +
Sbjct: 392 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEF 436

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>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 270 LNGLPYGE--NPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           +  LP+ E   P   LF+  +N    D +L+L+F ++G I
Sbjct: 240 MGDLPFAEVKPPENVLFVCKLNPVTTDEDLELIFSRFGKI 279

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 297 PSRTLFIRNINANVEDTELKLLFEQYGDIQT 389
           P  TLFI+N+N +  + +LK +F + G +++
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758

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>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 279 LPYGE--NPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           LP+ E   P   LF+  +N   +D +L L+F ++G I
Sbjct: 238 LPFAEVKPPENVLFVCKLNPVTQDEDLHLIFSRFGTI 274

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>PHEA_SHIFL (P0A9K0) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);|
           Prephenate dehydratase (EC 4.2.1.51) (PDT)]
          Length = 386

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 252 NTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           N   T L   P   NP   +F  +I AN+E  E++   ++ G+I
Sbjct: 322 NLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI 365

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>PHEA_ECOLI (P0A9J8) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);|
           Prephenate dehydratase (EC 4.2.1.51) (PDT)]
          Length = 386

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 252 NTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           N   T L   P   NP   +F  +I AN+E  E++   ++ G+I
Sbjct: 322 NLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI 365

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>PHEA_ECO57 (P0A9J9) P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);|
           Prephenate dehydratase (EC 4.2.1.51) (PDT)]
          Length = 386

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 252 NTGQTGLNGLPYGENPSRTLFIRNINANVEDTELKLLFEQYGDI 383
           N   T L   P   NP   +F  +I AN+E  E++   ++ G+I
Sbjct: 322 NLIMTRLESRPIHGNPWEEMFYLDIQANLESAEMQKALKELGEI 365

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 291 ENPSRTLFIRNINANVEDTELKLLFEQYGDIQ 386
           E  SRTLF++NI  +    EL+ +FE   DI+
Sbjct: 320 ERDSRTLFVKNIPYSTTVEELQEIFENAKDIR 351

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>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A) (Sex determination protein snf)
          Length = 216

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +3

Query: 297 PSRTLFIRNINANVEDTELK----LLFEQYGDI 383
           P++T++I N+N  ++  ELK     +F Q+G I
Sbjct: 5   PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQI 37

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>CX017_HUMAN (Q9NX05) Protein CXorf17 (Tumor antigen BJ-HCC-21)|
          Length = 1096

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 144 GQGDPHYKEHLTIS-RRHQGGDCQSLVPQFPELVQKAHHLH 25
           G G+PH    L++S R H       L P  PE+++ A H H
Sbjct: 575 GDGEPHIPSLLSMSTRNHMDITIPPLPPVAPEVLRVAEHRH 615

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>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 297 PSRTLFIRNINANVEDTELKLLFEQYGDI 383
           PSR LF+ N++ +V D  L+  F+  GDI
Sbjct: 237 PSRILFVGNLSFDVTDDLLRKHFQHCGDI 265

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>MEI2_SCHPO (P08965) Meiosis protein mei2|
          Length = 750

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLYTAYKHHGLVIISWYYDIRSA 455
           SR LF+ N+   V    L  LF + GD++ + T+      + I  ++DIR A
Sbjct: 194 SRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQA 245

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>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein|
          Length = 124

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 300 SRTLFIRNINANVEDTELKLLFEQYGDIQTLY----TAYKHHGLVIISWYYDIRSA 455
           +R L++RN+  N+   E+  +F +YG I+ +      A K    V+    YD ++A
Sbjct: 18  NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNA 73

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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 309 LFIRNINANVEDTELKLLFEQYGDIQTLYTA 401
           LF+RNI  +  + + K LF  YG+++ ++ A
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVA 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,747,089
Number of Sequences: 219361
Number of extensions: 1302894
Number of successful extensions: 3479
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 3363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3479
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result